Abstract: A multi-featured control system which improves the manufacturing capability of the thin-film semiconductor growth process. This system improves repeatability and accuracy of the process, reduces the manpower requirements to operate MBE, and improves the MBE environment for scientific investigation. This system has three levels of feedback control. The first level improves the precision and tracking of the process variables, flux, and substrate temperature. The second level comprises an expert system that uses sensors to monitor the status of the product in order to tailor the process plan in real time so that the exact qualities desired are achieved. The third level features a continuously evolving neural network model of the process which is used to recommend the recipe and command inputs to achieve a desired goal. The third level is particularly useful during the development process for new materials.