Abstract: A method for automating multimodal computational workflows enables an analysis process of an instruction set to be performed automatically in a cloud environment. Localizing step includes configuring a loader to load a dataset into dataframes of a memory or copy the dataset to a local host file system from a data source; configuring a transformer to transform the dataframes of the memory into a transformed dataset; configuring a formatter to format the transformed dataset to a formatted dataset; and configuring an executor to preprocess the formatted dataset as a managed table for a first command or save the formatted dataset to the local host file system for a second command. Delocalizing step includes configuring a collector to postprocess the command outputs outputted from the memory or retrieve the command outputs from the local host file system; and configuring a writer to save the command outputs to a storage.

Abstract: A method for facilitating optimization of a cluster computing network for sequencing data analysis using adaptive data parallelization is provided. The method comprises the following steps. (a) A data parallelization configuration is determined, based on sequencing data and a pipeline selection, wherein the data parallelization configuration includes partition indication data indicating at least one biological information unit based on which of the sequencing data is to be partitioned.

Abstract: Communication between software components in different virtual machines may be made through a hypervisor between pseudo-devices that have no corresponding physical device. A software component in a virtual machine transfers data to a pseudo-device in the virtual machine. The pseudo-device is connected to another pseudo-device in another virtual machine, and the connection is through the hypervisor. The data from the software component is transferred from the pseudo-device to the other pseudo-device over the connection through the hypervisor. The other pseudo-device in the other virtual machine receives the data and provides the data to another software component in the other virtual machine.