Abstract: Oligosaccharides fragmentation pattern analysis system 10 includes: a geometry optimization part for calculating an optimized structure of an ionized oligosaccharide; a binding parameter extraction part for extracting multiple kinds of binding parameters which relate to bond strengths for respective multiple candidate bonds to be the candidate of the cleavage site within the oligosaccharide from the calculation results by the geometry optimization part; a parameter conversion part for converting respective multiple kinds of binding parameters extracted at the binding parameter extraction part, into binding scores; a weight information storage part for storing the weight information representing contribution to respective bond strengths of multiple kinds of binding scores; and a total score calculating part for determining total score of multiple kinds of binding scores in each candidate bond such that the multiple kinds of binding parameters are weighed according to the weight information.