Abstract: A method for reconstructing physical connection relationships of general EDA model layouts comprising: separately establishing interconnection relationships between stack layers in an EDA model, connection relationships of graphics on each stack layer, and connection relationships of graphics on interconnected stack layers; summarizing the connection relationships established, and then establishing connection relationships of all graphics of an overall EDA model; and separately establishing physical connection relationships of interconnected graphics in each group to obtain physical connection relationships of the overall EDA model layout.