TRICYCLIC NECROSTATIN COMPOUNDS
The present invention features compounds, pharmaceutical compositions, and methods for treating trauma, ischemia, stroke, degenerative diseases associated with cellular necrosis, and other conditions. Screening assays for identifying compounds useful for treating these conditions are also described.
This application is a continuation of U.S. Ser. No. 12/086,792, filed on Jun. 19, 2008, and which has a 371(c) date of Jun. 22, 2009, which is the U.S. National Stage of International Application No. PCT/US2006/048583, filed Dec. 20, 2006, which in turn claims the benefit of U.S. Provisional Application No. 60/751,913, filed Dec. 20, 2005, and U.S. Provisional Application No. 60/843,304, filed Sep. 8, 2006, each of which is hereby incorporated by reference.
STATEMENT AS TO FEDERALLY SPONSORED RESEARCHThe present research was supported by grants from the National Institutes of Health (grant numbers GM64703, AG012859, and NS37141-08). The U.S. government has certain rights to this invention.
BACKGROUND OF THE INVENTIONIn many diseases, cell death is mediated through apoptotic and/or necrotic pathways. While much is known about the mechanisms of action that control apoptosis, control of necrosis is not as well understood. Understanding the mechanisms regulating both necrosis and apoptosis in cells is essential to being able to treat conditions, such as neurodegenerative diseases, stroke, coronary heart disease, kidney disease, and liver disease. A thorough understanding of necrotic and apoptotic cell death pathways is also crucial to treating AIDS and the conditions associated with AIDS, such as retinal necrosis.
Research has shown that caspases play a central role in the induction of apoptosis. Peptide based inhibitors of caspases, such as zVAD-fmk are useful in preventing activation of the apoptotic cell death pathway in cells stimulated to undergo apoptosis by compounds such as TNFα. However, cells treated with zVAD-fmk and these cell death stimuli still die through a caspase-independent form of necrosis.
The discovery of compounds that prevent caspase-independent cell death (e.g., necrosis or necroptosis) would provide useful therapeutic agents for treating conditions in which necrosis occurs, and for preventing the onset of necrosis or necroptosis. These compounds and methods would be particularly useful for treating neurodegenerative diseases, ischemic brain and heart injuries, and head traumas.
SUMMARY OF THE INVENTIONThe present invention features compounds, pharmaceutical compositions, kits, and methods for treating a range of conditions, e.g., those in which cell or tissue necrosis is a causative factor or result, those in which loss of proliferative capacity is a causative factor or a result, those in which cytokines of the TNFα family are a causative factor or a result, and those in which RIP1 protein is a contributing factor. The compounds of the present invention can be used, for example, as therapeutics to decrease necrosis in a desired cell, to increase cell proliferation, or to stimulate immune response. The compounds of the present invention can also be used, for example, to treat any of the conditions listed in Table 1. Exemplary conditions are neurodegenerative diseases of the central or peripheral nervous system; the result of retinal neuronal cell death; the result of cell death of cardiac muscle; the result of cell death of cells of the immune system; stroke; liver disease; pancreatic disease; the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury; ischemic injury during organ storage; head trauma; septic shock; coronary heart disease; cardiomyopathy; bone avascular necrosis; sickle cell disease; muscle wasting; gastrointestinal disease; tuberculosis; diabetes; alteration of blood vessels; muscular dystrophy; graft-versus-host disease; viral infection; Crohn's disease; ulcerative colitis; asthma; any condition in which cell or tissue necrosis is a causative factor or result; any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor; and any condition in which RIP1 protein is a contributing factor. The invention further features screening assays capable of identifying inhibitors of RIP1, a molecular target of compounds described herein. The additional inhibitors thus identified can be used in methods of disease treatment.
Accordingly, in a first aspect, the invention features a method of treating a subject with a disease or condition listed in Table 1 by administering to the subject an effective amount of a Nec-1e compound, a Nec-2b compound, or a Nec-3b compound. In some instances, the Nec-1e compound is a substantially pure A isomer or B isomer.
The invention also features a method of treating a subject with a disease or condition listed in Table 1 by administering to the subject an effective amount of a Nec-3 compound, wherein said Nec-3 compound is a substantially pure (3R,3aR)-rel isomer or a substantially pure (3R,3aS)-rel isomer. In some instances, the Nec-3 compound is a substantially pure (3R,3aR)-enantiomer, a substantially pure (3R,3aS)-enantiomer, a substantially pure (3S, 3aR)-enantiomer, or a substantially pure (3S,3aS)-enantiomer. In some instances, the Nec-3 compound is selected from compounds (1) to (217). For example, the Nec-3 compound may be selected from compounds (141), (161), (166), (167), (169), (171), (178), and (182) of Table 7; compounds (185), (188), (190), (192), and (194) of Table 8; and compounds (147), (148), (150), (151), (154), (158), and (159) of Table 9.
The invention further features a method of treating a subject with a disease or condition listed in Table 2 by administering to the subject an effective amount of a Nec compound. In some instances, the Nec compound is a Nec-1 compound of formula (I):
wherein
R1 represents methyl, methoxyl, Cl, Br, or F; and R2 represents alkyl of one to four carbon atoms. In some instances, R1 represents Cl and R2 represents methyl or ethyl. The Nec-1 compound can be a substantially pure A isomer or B isomer.
The invention additionally features a method of treating a subject with a disease or condition listed in Table 3 by administering to the subject an effective amount of a Nec-1c compound.
The invention further features a method of treating a subject with a disease or condition listed in Table 4 by administering to the subject an effective amount of a Nec-1d compound.
In general, the invention features a method of treating a subject with a disease or condition listed in Table 1 by administering to the subject an effective amount of a Nec compound.
The invention also features a method of treating a subject with a disease or condition listed in Table 1 by administering to the subject an effective amount of geldanamycin. Alternatively, the subject can be treated by administering an effective amount of any RIP1 inhibitor or HSP90 inhibitor.
The invention further features Nec compounds, pharmaceutical compositions containing Nec compounds together with a pharmaceutically acceptable excipient, and kits that include these compounds or compositions together with instructions for their use. In some instances, the invention features Nec-1e compounds; substantially pure A isomers and B isomers of Nec-1e compounds; Nec-2b compounds; Nec-3b compounds; and substantially pure (3R,3aR)-rel isomers and (3R,3aS)-rel isomers of Nec-3 compounds, e.g., selected from compounds (1) to (217) (e.g., compounds (141), (161), (166), (167), (169), (171), (178), and (182) of Table 7; compounds (185), (188), (190), (192), and (194) of Table 8; and compounds (147), (148), (150), (151), (154), (158), and (159) of Table 9). In some instances, the Nec-3 compounds featured herein may be substantially pure (3R,3aR)-enantiomers, (3R,3aS)-enantiomers, (3S,3aR)-enantiomers, or (3S,3aS)-enantiomers of Nec-3 compounds.
The invention further features a Nec-1 compound of formula (I):
wherein R1 represents methyl, methoxyl, Cl, Br, or F; and R2 represents alkyl of one to four carbon atoms.
In another instance, the invention features a Nec-1 compound of formula (II):
wherein R1 represents methoxyl, Cl, Br, or F; and R2 represents alkyl of one to four carbon atoms.
In still another instance, the invention features a Nec-1 compound of formula (III):
wherein R1 represents methyl; and R2 represents hydrogen or alkyl of one to four carbon atoms.
The invention further features a Nec-1 compound of formula (XVI):
wherein
each of X1 and X2, independently, represents ═S, ═O, ═N, H, R11, SR11, NR11, or OR11; Y represents S, NH or NR8; G represents CH2, O, SR7, or NR7; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C6-12 aryl, acyl, acetyl, acylamino, C2-9 heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, acyl, acetyl, acylamino, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C6-12 aryl, C2-9 heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, acyl, acetyl, acylamino, NO2, C1-7 alkyl, C2-7 alkenyl, or C2-7 alkenyl; R8 represents H, OH, NO2, F, Cl, Br, I, C1-7 alkyl, C6-12 aryl, arylalkyl, C2-7 alkenyl, C2-7 alkynyl, C2-9 heteroaryl, acetyl, methoxyl, amino, acylamino, acyl, or halogen; each of R9, R10, R9′, R10′, independently, represent H, OH, F, Cl, Br, I, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, or a three to six membered cycloalkyl that includes Cn and/or Cn′, or R9 and/or R10 can be absent; R11 represents H, OH, NO2, F, Cl, Br, I, acetyl, methoxyl, amino, acylamino, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, or acyl; each of n and n′ is an integer from zero to five, inclusive; n″ is 0 or 1; and each of bonds (a), (b), and (c) is, independently, a single bond or a double bond, provided that bond (a) and bond (b) are not both double bonds, wherein when X1 is ═O, OH, or H, X2 is not ═S or SR12, where R12 is H or alkyl, and wherein X1 and X2 are not both ═O. In some instances, each of G and Y represents NH; each of R1, R2, R3, R5, R9, and R10 represents H; n is 1; each of n′ and n″ is 0; (a) is a double bond, and each of (b) and (c) are double bonds. In some instances, R4 represents methyl, methoxyl, Cl, Br, or F; and R6 represents alkyl of one to four carbon atoms. In some instances, X1 is ═O or X2 is ═O. Any of the Nec-1 compounds featured herein may be substantially pure A isomers or B isomers.
The invention further features a Nec-2 compound of formula (IV):
wherein
each of R1, R2, R3, R4, R5, R6, R7, R8, R9, and R10, independently, represents hydrogen, acyl, acetyl, linear and branching alkyl, halogen, amino, methoxyl, nitro, or C(O)R12, C(S)R12, C(O)OR12, C(O)NR12R13, C(S)NR12R13, or S(O2)R12; wherein each of R12 and R13, independently, represents hydrogen, an optionally substituted C1-12 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl; the bond indicated by (a) can be a single or double bond; the bond indicated by (b) can be a single or double bond; and X is hydrogen, acyl, acetyl, alkyl, halogen, amino, acylamino, nitro, ═S, SR11, ═N, NR11, ═O, or OR11, wherein R11 is hydrogen, acyl, acetyl, alkyl, or acylamino; wherein when each of R1, R4, R5, R6, R9 and R10 is hydrogen and each of R2, R3, R7, and R9 is methoxyl, X is not ═O, hydrogen, or hydroxyl.
The invention further features a Nec-3 compound of formula (V):
wherein
Z is a bond, CH2, CH2CH2, O, S, S(O), S(O2), or NR8; wherein R8 is an optionally substituted C1-6 alkyl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl;
the bond indicated by (a) can be a single or double bond;
each of R1, R2, R3, and R4, independently, represents hydrogen, alkanoyl of one to six carbon atoms; alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; C7-16 aralkyl; amino; aminoalkyl of one to six carbon atoms; C6 or C10 aryl; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9heterocyclyl; C2-9 (heterocyclyl)oxy; C3-10 (heterocyclyl)oyl; hydroxyl; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6 or C10 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
R5 is an optionally substituted C6 or C10 aryl or an optionally substituted C2-9 heteroaryl;
R6 is C(O)R9, C(S)R9, C(O)OR9, C(O)NR9R10, C(S)NR9R10, C(NH)R9, or S(O2)R9, wherein each of R9 and R10, independently, represents H, an optionally substituted C1-12 alkyl, an optionally substituted C1-7 heteroalkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl;
R7 is hydrogen, C1-6 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C7-16 aralkyl, an optionally substituted C2-9 heteroaryl, or an optionally substituted C2-15 heteroaralkyl; and
R11 is H, an optionally substituted C1-12 alkyl, or an optionally substituted C1-7 heteroalkyl,
wherein when each of R1, R2, R4, and R7 is selected from the group consisting of hydrogen, amino, halide, and hydroxyl and Z is CH2, R3 is not hydroxyl or methoxyl.
The invention additionally features a Nec-3 compound of formula (VI):
wherein
Z is a bond, CH2, CH2CH2, O, S, S(O), S(O2), or NR12; wherein R12 is an optionally substituted C1-6 alkyl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl;
the bond indicated by (a) can be a single or double bond;
each of R1, R2, R3, R4, R7, R8, R9, R10, and Ru, independently, represents hydrogen, alkanoyl of one to six carbon atoms; alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; C7-16 aralkyl; amino; aminoalkyl of one to six carbon atoms; C6 or C10 aryl; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9heterocyclyl; C2-9 (heterocyclyl)oxy; C3-10 (heterocyclyl)oyl; hydroxyl; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6 or C10 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
R5 is C(O)R13, C(S)R13, C(O)OR13, C(O)NR13R14, C(S)NR13R14, C(NH)R13, or S(O2)R13, wherein each of R13 and R14, independently, represents hydrogen, an optionally substituted C1-12 alkyl, an optionally substituted C1-7heteroalkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl; and
R6 is hydrogen, C1-6 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C7-16 aralkyl, an optionally substituted C2-9 heteroaryl, or an optionally substituted C2-15 heteroaralkyl, wherein when each of R1, R2, R4, and R6 through R11 is selected from the group consisting of hydrogen, amino, halide, and hydroxyl and Z is CH2, R3 is not hydroxyl or methoxyl. In some instances, the bond indicated by (a) is a double bond, and each of R1, R2, R4, R6, R7, R8, R10, and R11, independently, represents hydrogen. In some instances, each of R3 and R9, independently, represents alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; halo; or amino.
The invention additionally features a pharmaceutical composition that includes: (i) any of the Nec compounds described herein, e.g., Nec-1e, Nec-2b, or Nec-3b compounds; and (ii) a pharmaceutically acceptable excipient.
The invention further features a kit that includes: (i) any of the Nec compounds described herein, e.g., Nec-1e, Nec-2b, or Nec-3b compounds; and (ii) instructions for administering the compound to a subject with a disease or condition listed in Table 1.
The invention additionally features a method of identifying a candidate compound as a compound that selectively inhibits RIP1, including the following steps: a) incubating a mixture including a RIP1 polypeptide and the candidate compound under conditions such that, in the absence of the compound, the RIP1 polypeptide is capable of undergoing phosphorylation at a reference level; b) detecting the level of RIP1 phosphorylation; c) determining the ratio of the level of RIP1 phosphorylation to the reference level; d) incubating a second mixture including a RIP2 or RIP3 polypeptide and the compound under conditions such that, in the absence of the compound, the RIP2 polypeptide is capable of undergoing phosphorylation at a second reference level; e) detecting the level of RIP2 or RIP3 phosphorylation; and f) determining the ratio of the level of RIP2 or RIP3 phosphorylation to the second reference level. In this method, if the ratio determined in step c) is less than the ratio determined in step f), the compound is found to inhibit RIP1 selectively.
The invention further features a method of identifying a candidate compound as a compound that selectively inhibits RIP1, including the following steps: a) contacting a RIP1 polypeptide and the candidate compound; b) detecting binding of the compound to the RIP1 polypeptide; c) contacting a RIP2 or RIP3 polypeptide and the compound; and d) detecting binding of the compound to the RIP2 or RIP3 polypeptide. In this method, a compound that binds the RIP1 polypeptide and not the RIP2 or RIP3 polypeptide is found to inhibit RIP1 selectively.
DEFINITIONSAs used throughout this specification and the appended claims, the following terms have the meanings specified:
By “Nec-1a compound” is meant a compound of formula (VII):
wherein each of R1, R2, R3, and R4 is independently selected from the group consisting of hydrogen, carboxy, methyl, hydroxyl, methoxyl, amino, and nitro; R5 is selected from the group consisting of hydrogen, C1-6 alkyl, and acyl; R6 is selected from the group consisting of C1-6 alkyl, acyl, halogen, hydrogen, or hydroxyl; R7 is selected from the group consisting of methyl, hydroxyl, carboxyl, and C1-6 alkyl groups; X is selected from the group consisting of ═O, —OH, and —H; Y is selected from the group consisting of ═S and —SR8, where R8 is either hydrogen or a C1-6 alkyl group; and each of the bonds (a), (b), and (c) independently is either a double or single bond, provided, however, that bond (a) and bond (b) are not both double bonds.
By “Nec-1b compound” is meant a compound of one of formulas (VIII)-(XV).
Compounds of formula (VIII) have the structure:
wherein X represents O; Y represents S; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H or lower alkyl; R8 represents lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (IX) have the structure:
wherein X represents O; Y represents NR8; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H or lower alkyl; R8 represents lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (X) have the structure:
wherein X represents O; Y represents NH; each of R1, R2, and R3, independently, represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6 and R7, independently, represents H or lower alkyl, except R6 can not be methyl, ethyl, propyl, isopropyl or t-butyl when R1, R2, R3, R4, R5 and R7 are H; R8 represents H, lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (XI) have the structure:
wherein X represents O; Y represents NH; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H or lower alkyl; R8 represents lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (XII) have the structure:
wherein X represents S; Y represents S; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H or lower alkyl; R8 represents lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (XIII) have the structure:
wherein X represents S; Y represents NR8; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, methyl, methoxyl, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H or lower alkyl; R8 represents lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
Compounds of formula (XIV) have the structure:
wherein X represents S; Y represents NH; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, piperizine, lower alkyl and substituted lower alkyl except for methyl and methoxyl; each of R5, R6 and R7, independently, represents H or lower alkyl, except R6 can not be methyl when R1, R2, R3, R4, R5 and R7 are H; R8 represents H, lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n equals an integer from zero to five.
Compounds of formula (XV) have the structure:
wherein X represents S or O; Y represents S, NH or NR8; G represents O or NR7; each of R1, R2, and R3, independently, represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, lower alkyl, substituted lower alkyl, aryl, substituted aryl, heteroaryl, or substituted heteroaryl; R4 represents H, OR8, F, Cl, Br, I, N(R8)2, CO2R8, NO2, NHC(O)R8, aryl, substituted aryl, heteroaryl, or substituted heteroaryl, amine, piperizine, lower alkyl and substituted lower alkyl; each of R5, R6 and R7, independently, represents H or lower alkyl; R8 represents H, lower alkyl, substituted lower alkyl, aryl, substituted aryl, arylalkyl, alkenyl, alkynyl, heteroaryl, or substituted heteroaryl; each of R9, R10, R9′, and R10′, independently, represents H, F, Cl, Br, I, lower alkyl, substituted lower alkyl, or a three to six membered cycloalkyl or substituted cycloalkyl that includes Cn and/or Cn′; n and n′ equals an integer from zero to five.
By “Nec-1c compound” is meant a Nec-1b compound that is not also a Nec-1a compound.
By “Nec-1d compound” is meant a Nec-1a compound that is not also a Nec-1b compound.
By “Nec-1 compound” is meant a Nec-1a compound, a Nec-1b compound, or a compound of formula (XVI).
Compounds of formula (XVI) have the structure:
wherein each of X1 and X2, independently, represents ═S, ═O, ═N, H, R11, SR11, NR11, or OR11; Y represents S, NH or NR8; G represents CH2, O, SRS, or NR7; each of R1, R2, and R3, independently, represent H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C6-12 aryl, acyl, acetyl, acylamino, C2-9 heteroaryl; R4 represents H, OH, OR8, F, Cl, Br, I, N(R8)2, COOH, CO2R8, NO2, NHC(O)R8, acyl, acetyl, acylamino, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C6-12 aryl, C2-9 heteroaryl, amine, or piperizine; each of R5, R6, and R7, independently, represents H, OH, OR8, F, Cl, Br, I, N(R8)2, acyl, acetyl, acylamino, NO2, C1-7 alkyl, C2-7 alkenyl, or C2-7 alkenyl; R8 represents H, OH, NO2, F, Cl, Br, I, C1-7 alkyl, C6-12 aryl, arylalkyl, C2-7 alkenyl, C2-7 alkynyl, C2-9 heteroaryl, acetyl, methoxyl, amino, acylamino, acyl, or halogen; each of R9, R10, R9′, R10′, independently, represent H, OH, F, Cl, Br, I, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, or a three to six membered cycloalkyl that includes Cn and/or Cn′, or R9 and/or R10 can be absent; R11 represents H, OH, NO2, F, Cl, Br, I, acetyl, methoxyl, amino, acylamino, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, or acyl; each of n and n′ is an integer from zero to five, inclusive; n″ is 0 or 1; and each of bonds (a), (b), and (c) is, independently, a single bond or a double bond, provided that bond (a) and bond (b) are not both double bonds. Exemplary acyl groups are:
In one embodiment, each of R1, R2, R3, R4, R5, R9, and R10 is hydrogen; R6 is a methyl group; n is 1; n′ and n″ are each 0; X1 is ═O; X2 is ═S; Y and G are each —NH—; bond (a) is a double bond; and bonds (b) and (c) are each single bonds.
In other embodiments, each of R1, R2, R3, R5, R9, and R10 is hydrogen; R4, is methyl or halogen; R6 is a methyl group; n is 1; n′ and n″ are each 0; X1 is ═O; X2 is ═S; Y and G are each —NH—; bond (a) is a double bond; and bonds (b) and (c) are each single bonds.
In other embodiments, each of R1, R2, R3, R5, R9, and R10 is hydrogen; R4, is hydrogen, methyl, or halogen; R6 is a methyl group or hydrogen; n is 1; n′ and n″ are each 0; X1 is ═O; X2 is ═O; Y and G are each —NH—; bond (a) is a double bond; and bonds (b) and (c) are each single bonds.
By “Nec-1e compound” is meant a Nec-1 compound that is neither a Nec-1a compound nor a Nec-1b compound.
By “Nec-2a compound” is meant a compound of formula (XVII) or (XVIII).
Compounds of formula (XVII) have the structure:
wherein each of X1 and X2 is independently selected from the group consisting of ═O, —OH, and —H; R1 is selected from the group consisting of hydrogen and hydroxyl; R2 is selected from the group consisting of hydrogen, sulfate, nitro, and halide; and the bond (a) is either a single or double bond.
Compounds of formula (XVIII) have the structure:
wherein each R is independently selected from the group consisting of H or CH3; the bond (a) is either a single or double bond; the bond (b) is either a single or double bond; and X is selected from the group consisting of ═O, —OH, and —H.
By “Nec-2 compound” is meant a Nec-2a compound or a compound of formula (XIX).
Compounds of formula (XIX) have the structure:
wherein each of R1, R2, R3, R4, and R5, independently, represents H, OH, SO2, NO2, F, Cl, Br, I, acyl, acetyl, alkyl, methoxyl, amino, acylamino,
wherein Ra is a C6-12 aryl substituent; the bond (a) is either a single or double bond; X represents ═O, OH, or H; R6 is:
the bond (b) is either a single or double bond, with the proviso that bond (b) is a single bond when n=0; Y is O or S; each of R7, R8, R9, and R10, independently, represents H, OH, SO2, NO2, F, Cl, Br, I, acyl, acetyl, alkyl, methoxyl, amino, acylamino,
wherein Ra is an C6-12 aryl substituent; and R11 represents ═O, OH, or H.
In one embodiment, R6 is:
each of R1, R4, R5, R7, R10, and R11 is hydrogen; each of R2, R3, R8, and R9 is —CH3; X is ═O; and bonds (a) and (b) are each double bonds.
In another embodiment R6 is:
each of R11 and X is ═O; R7 and R3 are each a hydroxyl group; R2 is a nitro group; R9 is a methyl group; each of R1, R4, R5, and R8 is hydrogen; and the bond (a) is a double bond.
In other embodiments, when the Nec-2 compound has the formula:
if R11 is ═O, then X is not ═O; or R7 is not a hydroxyl group; or R2 is a not a nitro group; or the bond (a) is not a double bond. If X is ═O, then R11 is not ═O; or R7 is not a hydroxyl group; or R2 is not a nitro group; or the bond (a) is not a double bond. If R7 is a hydroxyl group, then R11 and X are not both ═O; or R2 is a not a nitro group; or the bond (a) is not a double bond. If R2 is a nitro group, then R11 and X are not both ═O; or R7 is not a hydroxyl group; or the bond (a) is not a double bond. If the bond (a) is a double bond, then R11 and X are not both ═O; or R7 is not a hydroxyl group; or R2 is a not a nitro group; or the bond (a) is not a double bond.
By “Nec-2b compound” is meant a Nec-2 compound that is not also a Nec-2a compound.
By “Nec-3a compound” is meant a compound of formula (XX):
wherein each of R1, R2, R4, R5, R6, R7, R8, and R9 is independently selected from the group consisting of hydrogen, amino, halide, and hydroxyl; R3 is selected from the group consisting of hydrogen and methyl; and the bond (a) is either a single or double bond.
By “Nec-3 compound” is meant a Nec-3a compound, a compound of formula (XXI), or any of compounds (1) to (217).
Compounds of formula (XXI) have the structure:
wherein Z is a bond, CH2, CH2CH2, O, S, S(O), S(O2), or NR8; where R8 is alkyl, an aralkyl, or heteroaralkyl;
the bond indicated by (a) can be a single or double bond;
each of R1, R2, R3, and R4 independently, represents H; alkanoyl of one to six carbon atoms; alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; amino; aminoalkyl of one to six carbon atoms; C6-12 aryl; C7-16 arylalkyl, wherein the alkylene group is of one to six carbon atoms; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9 heterocyclyl; C2-9 (heterocyclyl)oxy;
C3-10 (heterocyclyl)oyl; hydroxy; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6-12 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms;
—(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6-12 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6-12 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6-12 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6-12 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
R5 is an optionally substituted C6 or C10 aryl or an optionally substituted C2-9 heteroaryl;
R6 is C(O)R9, C(S)R9, C(O)OR9, C(O)NR9R10, C(S)NR9R10, C(NH)R9, or S(O2)R9, where each of R9 and R10, independently, represents H, an optionally substituted C1-12 alkyl, an optionally substituted C1-7 heteroalkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl;
R7 is H, C1-6 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C7-16 aralkyl, an optionally substituted C2-9 heteroaryl, or an optionally substituted C2-15 heteroaralkyl; and
R15 is H, an optionally substituted C1-12 alkyl, or an optionally substituted C1-7 heteroalkyl.
In one embodiment, the bond indicated by (a) is a single bond. In a desirable embodiment, the bond indicated by (a) is a double bond.
In another embodiment, Z is a bond, CH2CH2, O, S, S(O), S(O2), or NR8; where R8 is as defined previously herein.
In another embodiment, R5 is an optionally substituted C10 aryl or an optionally substituted C2-9 heteroaryl group.
In another embodiment, R6 is C(O)R9, where R9 is an optionally substituted C2-12 alkyl group. Desirable examples are those in which R9 is a C2-12 alkyl group substituted with a moiety that increases water solubility such as, for example, a morpholino group, a morpholino amide or morpholinoalkyl ester moiety (e.g. R9 is —(CH2)n-morpholino, —(CH2)nCO-morpholino-, or —(CH2)nCO2(CH2)2-morpholino); a piperazinyl group, a piperazinyl amide, or a piperazinylalkyl ester moiety (e.g. R9 is —(CH2)n-piperizinyl, is —(CH2)n—N4-alkylpiperizinyl, —(CH2)nCO-piperizinyl-, —(CH2)nCO—N4-alkylpiperizinyl-, —(CH2)nCO2(CH2)2-piperizinyl, or —(CH2)nCO2(CH2)2—N4-alkylpiperizinyl), where n is an integer of from 1 to 6; hydroxyl groups (e.g. from 1 to 4 hydroxyl substituents), C2-7 acyloxy groups, C2-7 carboxylic acid esters, a primary amine, a secondary amine, or a tertiary amine. Also desirable are those alkyl substituents that include a recognition moiety, such as, for example, a biotin moiety, such as, for example —(CH2)nNH-biotinyl.
In another embodiment, R6 is C(O)R9, C(S)R9, C(O)OR9, C(O)NR9R10, C(S)NR9R10, or S(O2)R9, where R9 is an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl; and R10 is H, an optionally substituted C1-12 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl.
In another embodiment, R6 is C(S)R9, C(O)OR9, C(O)NR9R10, C(S)NR9R10, or S(O2)R9, where R9 and R10 are as defined above.
In another embodiment, Z is CH2; each of R1 and R4 is H; R2 is H, C1-6 alkoxy, C1-6 thioalkoxy, halo, or together with R3 forms a dioxomethylene or a dioxoethylene group; R3 is H, C1-6 alkoxy, C1-6 thioalkoxy, halo, or together with R2 forms a dioxomethylene or a dioxoethylene group; and R5 is
where
each of R11, R12, and R13, independently, represents H, C1-6 alkoxy, or C1-6 thioalkoxy, where R11 and R12 or R12 and R13 can together form a dioxomethylene or a dioxoethylene group, and R14 is H.
In a desirable example, Z is CH2; the bond indicated by (a) is a double bond each of R1, R2, and R4 is hydrogen; R3 is methoxy; R5 is a 4-methoxyphenyl ring; R6 is a methyl group; and R7 is H.
In yet another embodiment, Z is CH2; the bond indicated by (a) is a double bond; each of R1, R2, and R4 is independently selected from the group consisting of hydrogen, amino, halide, and hydroxyl; R3 is hydrogen or methoxy; R5 is a phenyl ring whose substituents at the 2-, 3-, 4-, 5-, and 6-positions are independently selected from the group consisting of: hydrogen, amino, halide, and hydroxyl; R7 is H; and R9 is methyl.
In a desirable example, each of R1, R2, and R4 is hydrogen; R3 is methoxy; R5 is a 4-fluorophenyl ring; R6 is a methyl group; R7 is H; Z is CH2; and the bond indicated by (a) is a double bond.
By “Nec-3b compound” is meant a Nec-3 compound that is not also a Nec-3a compound.
“Nec compound,” “necrostatin compound,” and “necrostatin” are used interchangeably herein and refer to a Nec-1 compound, a Nec-2 compound, or a Nec-3 compound.
By “decreasing necrosis” is meant reducing the number of cells which undergo necrosis relative to a control cell receiving a cell death stimulus, such as, for example, by contacting the cell with TNFα or DMSO, without a candidate small molecule inhibitor. Preferably necrosis is decreased 10% relative to a control. More preferably necrosis is decreased 50% relative to a control. Most preferably necrosis is decreased 90% relative to a control. Preferably a decrease in necrosis is tested by determining the ATP level in a cell which has received a candidate compound, such as a compound from a chemical library, and comparing it to the ATP level in a control cell. Necrosis is decreased in a cell treated with a candidate compound in which the ATP level does not decrease as much as it does in the control cell.
By “candidate compound” is meant a chemical, be it naturally-occurring or artificially-derived, that is surveyed for its ability to modulate the level of necrosis by employing one of the assay methods described herein. Candidate compounds may include, for example, peptides, polypeptides, synthesized organic molecules, naturally occurring organic molecules, nucleic acid molecules, and components thereof.
By “cell death” is meant the death of a cell by either apoptosis or necrosis.
As used herein, by “necrosis” is meant caspase-independent cell death characterized by cellular ATP depletion. Preferably the cell is depleted of ATP 10% relative to a control cell, receiving vehicle only (for example, DMSO). More preferably, the cell is depleted of ATP 50% relative to a control cell. Most preferably, the cell is depleted of ATP 90% relative to a control cell. Preferably, necrosis is tested by determining the ATP level in a cell which has received a compound, for example, zVAD-fmk, DMSO, or TNFα, and comparing it to the ATP level in a cell receiving vehicle only. Necrosis occurs in a cell treated with a candidate compound in which the ATP level decreases relative to the control cell.
Necrosis may be liquefactive, may affect adipose or hepatic tissue, and may be caseous or fibrinoid. A cell may undergo necrosis in response to ischemic cell injury or viral infection.
By “caspase-independent cell death” is meant cell death that occurs when apoptosis is prevented. Apoptosis may be prevented by contacting a cell with a caspase inhibitor such as zVAD-fmk at a concentration sufficient enough that the cell survives when stimulated to undergo apoptosis, for example, by treatment with an apoptosis-promoting drug or ionizing radiation.
By “apoptosis” is meant cell death characterized by any of the following properties: nuclear condensation, DNA fragmentation, membrane blebbing, or cell shrinkage.
By “modulation of intracellular signaling pathways mediated by TNFα” is meant a change in the communication between components of a cell in response to contacting the cell with TNFα. The change may be in the way or duration in which proteins within the cell interact, or the way or duration in which proteins are altered, such as by phosphorylation or dephosphorylation, or in the way or duration in which proteins interact with DNA.
By “modulation of intracellular signaling pathways mediated by DMSO” is meant a change in the communication between components of a cell in response to contacting the cell with DMSO. The change may be in the way or duration in which proteins within the cell interact, or the way or duration in which proteins are altered, such as by phosphorylation or dephosphorylation, or in the way or duration in which proteins interact with DNA.
By “treating” is meant administering a pharmaceutical composition for prophylactic and/or therapeutic purposes. To “prevent disease” refers to prophylactic treatment of a subject who is not yet ill, but who is susceptible to, or otherwise at risk of, a particular disease. To “treat disease” or use for “therapeutic treatment” refers to administering treatment to a subject already suffering from a disease to improve or stabilize the subject's condition. Thus, in the claims and embodiments, treating is the administration to a subject either for therapeutic or prophylactic purposes.
By “condition” is meant a state of being or feeling. Conditions include, but are not limited to, those listed in Table 1.
As used herein, the terms “an amount effective” and “effective amount” refer to the amount of a compound of the invention required for treating a condition, e.g., a condition of Table 1. Exemplary conditions are neurodegenerative diseases of the central or peripheral nervous system; the result of retinal neuronal cell death; the result of cell death of cardiac muscle; the result of cell death of cells of the immune system; stroke; liver disease; pancreatic disease; the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury; ischemic injury during organ storage; head trauma; septic shock; coronary heart disease; cardiomyopathy; bone avascular necrosis; sickle cell disease; muscle wasting; gastrointestinal disease; tuberculosis; diabetes; alteration of blood vessels; muscular dystrophy; graft-versus-host disease; viral infection; Crohn's disease; ulcerative colitis; asthma; any condition in which cell or tissue necrosis is a causative factor or result; any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor; and any condition in which RIP1 protein is a contributing factor. The effective amount used to practice the invention for therapeutic or prophylactic treatment of such conditions varies depending upon the manner of administration, the age, body weight, and general health of the subject. Ultimately, the attending physician or veterinarian will decide the appropriate amount and dosage regimen. Such amount is referred to as an “effective” amount.
By “neurodegenerative disease” is meant a disease characterized by neuronal cell death. Examples of neurodegenerative diseases include, but are not limited to, Alzheimer's disease, amyotropic lateral sclerosis, cerebral ischemia, Creutzfeldt-Jakob disease, Fahr disease, Huntington's disease and related polyglutamine expansion diseases, Lewy body disease, Menke's disease, multiple sclerosis, stroke, and Wilson's disease.
By “neuron” is meant a cell of ectodermal embryonic origin derived from any part of the nervous system of an animal. Neurons express well-characterized neuron-specific markers which include neurofilament proteins, MAP2, and class III β-tubulin. Included as neurons are, for example, hippocampal, cortical, midbrain dopaminergic, motor, sensory, sympathetic, septal cholinergic, and cerebellar neurons.
By a “dosage sufficient to decrease necrosis” is meant an amount of a chemical compound or small molecule which when administered to a subject will decrease necrosis. Preferably necrosis is decreased in the subject 10% relative to an untreated subject. More preferably necrosis is decreased in the subject 50% relative to an untreated subject. Most preferably necrosis is decreased in the subject 90% relative to an untreated subject.
By “measuring necrosis” is meant determining if a cell is dying through necrosis, in the presence of a compound, compared to a cell which is not in the presence of the compound (control cell). Necrosis can be measured by determining cellular ATP levels, wherein a cell that is undergoing necrosis has a decreased level of cellular ATP compared to a control cell. Necrosis may also be measured by staining with a vital dye, for example, trypan blue, wherein a cell which is necrosing will be stained with the vital dye, and a cell which is not necrosing will not be stained with the dye.
By “pharmaceutical composition” is meant a composition containing a compound of the invention, formulated with a pharmaceutically acceptable excipient, and manufactured or sold with the approval of a governmental regulatory agency as part of a therapeutic regimen for the treatment of disease in a mammal. Excipients consisting of ethanol or DMSO are specifically excluded. Pharmaceutical compositions can be formulated, for example, for oral administration in unit dosage form (e.g., a tablet, capsule, caplet, gelcap, or syrup); for topical administration (e.g., as a cream, gel, lotion, or ointment); for intravenous administration (e.g., as a sterile solution free of particulate emboli and in a solvent system suitable for intravenous use); or any other formulation described herein.
The term “pharmaceutically acceptable salt,” as used herein, represents those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and animals without undue toxicity, irritation, allergic response and the like and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M Berge et al. describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66:1-19. The salts can be prepared in situ during the final isolation and purification of the compounds of the invention or separately by reacting the free base group with a suitable organic acid. Representative acid addition salts include acetate, adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphersulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, glucoheptonate, glycerophosphate, hemisulfate, heptonate, hexanoate, hydrobromide, hydrochloride, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, toluenesulfonate, undecanoate, valerate salts and the like. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium and the like, as well as nontoxic ammonium, quaternary ammonium, and amine cations, including, but not limited to ammonium, tetramethylammonium, tetraethylammonium, methylamine, dimethylamine, trimethylamine, triethylamine, ethylamine and the like.
The term “pharmaceutically acceptable ester,” as used herein, represents esters which hydrolyze in vivo and include those that break down readily in the human body to leave the parent compound or a salt thereof. Suitable ester groups include, for example, those derived from pharmaceutically acceptable aliphatic carboxylic acids, particularly alkanoic, alkenoic, cycloalkanoic and alkanedioic acids, in which each alkyl or alkenyl group preferably has not more than 6 carbon atoms. Examples of particular esters includes formates, acetates, propionates, butyates, acrylates and ethylsuccinates.
The term “pharmaceutically acceptable prodrugs” as used herein, represents those prodrugs of the compounds of the present invention which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and animals with undue toxicity, irritation, allergic response, and the like, commensurate with a reasonable benefit/risk ratio, and effective for their intended use, as well as the zwitterionic forms, where possible, of the compounds of the invention.
The term “prodrug,” as used herein, represents compounds which are rapidly transformed in vivo to the parent compound of the above formula, for example, by hydrolysis in blood. A thorough discussion is provided in T. Higuchi and V. Stella, Pro-drugs as Novel Delivery Systems, Vol. 14 of the A.C.S. Symposium Series, Edward B. Roche, ed., Bioreversible Carriers in Drug Design, American Pharmaceutical Association and Pergamon Press, 1987, and Judkins, et al. Synthetic Communications, 26(23), 4351-4367 (1996), each of which is incorporated herein by reference.
Asymmetric or chiral centers may exist in the compounds of the present invention. The present invention contemplates the various stereoisomers and mixtures thereof. Individual stereoisomers of compounds or the present invention are prepared synthetically from commercially available starting materials which contain asymmetric or chiral centers or by preparation of mixtures of enantiomeric compounds followed by resolution well-known to those of ordinary skill in the art. These methods of resolution are exemplified by (1) attachment of a racemic mixture of enantiomers, designated (+/−), to a chiral auxiliary, separation of the resulting diastereomers by recrystallization or chromatography and liberation of the optically pure product from the auxiliary or (2) direct separation of the mixture of optical enantiomers on chiral chromatographic columns. Enantiomers are designated herein by the symbols “R” or “S,” depending on the configuration of substituents around the chiral carbon atom.
Geometric isomers may also exist in the compounds of the present invention. The present invention contemplates the various geometric isomers and mixtures thereof resulting from the arrangement of substituents around a carbon-carbon double bond and designates such isomers as of the Z or E configuration, wherein the term “Z” represents substituents on the same side of the carbon-carbon double bond and the term “E” represents substituents on opposite sides of the carbon-carbon double bond.
Compounds useful in the invention include those described herein in any of their pharmaceutically acceptable forms, including isomers such as diastereomers and enantiomers, salts, e.g., acid or base addition salts, esters, amides, thioesters, solvates, and polymorphs thereof, as well as racemic mixtures and pure isomers of the compounds described herein.
As used herein, “A isomer” refers to a Nec-1 compound (e.g., a Nec-1a compound, a Nec-1b compound, a Nec-1c compound, a Nec-1d compound, or a Nec-1e compound) in which the stereochemistry at position * is as shown in Formula XXXIX:
By way of example, R-7-Cl—O-Nec-1 is an A isomer, as shown below (note that the hydantoin moiety is flipped in the below representation):
“Substantially pure A isomer” refers to a composition in which the ratio of A isomer to B isomer is at least 10, 20, 30, 100, 200, or even 400.
As used herein, “B isomer” refers to a Nec-1 compound (e.g., a Nec-1a compound, a Nec-1b compound, a Nec-1c compound, a Nec-1d compound, or a Nec-1e compound) in which the stereochemistry at position * is as shown in Formula XXXX:
“Substantially pure B isomer” refers to a composition in which the ratio of B isomer to A isomer is at least 10, 20, 30, 100, 200, or even 400.
By “(3R,3aR)-rel isomer” (a.k.a. C3/C3a cis isomer) is meant a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the lowest priority substituents (e.g., hydrogens) at positions C3 and C3a, as shown in Formula XXII, are syn with respect to each other. “Substantially pure (3R,3aR)-rel isomer” refers to a composition in which the ratio of (3R,3aR)-rel isomer to (3R,3aS)-rel isomer is at least 10, 20, 30, 100, 200, or even 400.
By “(3R,3aS)-rel isomer” (a.k.a. C3/C3a trans isomer) is meant a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the lowest priority substituents (e.g., hydrogens) at positions C3 and C3a, as shown in Formula XXII, are anti with respect to each other. “Substantially pure (3R,3aS)-rel isomer” refers to a composition in which the ratio of (3R,3aS)-rel isomer to (3R,3aR)-rel isomer is at least 10, 20, 30, 100, 200, or even 400.
“(3R,3aR)-enantiomer” refers to a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the absolute stereochemistry at position C3, as shown in Formula XXII, is R, and the absolute stereochemistry at position C3a, as shown in Formula XXII, is, R, as determined by the Cahn-Ingold-Prelog priority rules. “Substantially pure (3R, 3aR)-enantiomer” refers to a composition in which the ratio of (3R,3aR)-enantiomer to (3S, 3aS)-enantiomer is at least 10, 20, 30, 100, 200, or even 400.
“(3R,3aS)-enantiomer” refers to a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the absolute stereochemistry at position C3, as shown in Formula XXII, is R, and the absolute stereochemistry at position C3a, as shown in Formula XXII, is, S, as determined by the Cahn-Ingold-Prelog priority rules. “Substantially pure (3R, 3aS)-enantiomer” refers to a composition in which the ratio of (3R,3aS)-enantiomer to (3S, 3aR)-enantiomer is at least 10, 20, 30, 100, 200, or even 400.
“(3S,3aR)-enantiomer” refers to a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the absolute stereochemistry at position C3, as shown in Formula XXII, is S, and the absolute stereochemistry at position C3a, as shown in Formula XXII, is, R, as determined by the Cahn-Ingold-Prelog priority rules. “Substantially pure (3S, 3aR)-enantiomer” refers to a composition in which the ratio of (3S,3aR)-enantiomer to (3R, 3aS)-enantiomer is at least 10, 20, 30, 100, 200, or even 400.
“(3S,3aS)-enantiomer” refers to a Nec-3 compound (e.g., a Nec-3a compound or Nec-3b compound) in which the absolute stereochemistry at position C3, as shown in Formula XXII, is S, and the absolute stereochemistry at position C3a, as shown in Formula XXII, is, S, as determined by the Cahn-Ingold-Prelog priority rules. “Substantially pure (3S, 3aS)-enantiomer” refers to a composition in which the ratio of (3S,3aS)-enantiomer to (3R, 3aR)-enantiomer is at least 10, 20, 30, 100, 200, or even 400.
By “ischemia” is meant a cardiovascular disorder characterized by a low oxygen state usually due to the obstruction of the arterial blood supply or inadequate blood flow leading to hypoxia in the tissue.
By “myocardial infarction” is meant a cardiovascular disorder characterized by localized necrosis resulting from obstruction of the blood supply.
By “stroke” is meant a cardiovascular disorder caused by a blood clot or bleeding in the brain, most commonly caused by an interruption in the flow of blood in the brain as from clot blocking a blood vessel. In certain embodiments of the invention, the term “stroke” refers to ischemic stroke or hemorrhagic stroke.
By “trauma” is meant any physical damage to the body caused by violence, accident, fracture, etc.
Definitions Specific to Nec-1b Compounds
The following definitions apply specifically to Nec-1b compounds.
The term “alkyl” refers to the radical of saturated aliphatic groups, including straight-chain alkyl groups, branched-chain alkyl groups, cycloalkyl (alicyclic) groups, alkyl substituted cycloalkyl groups, and cycloalkyl substituted alkyl groups. In preferred embodiments, a straight chain or branched chain alkyl has 12 or fewer carbon atoms in its backbone (e.g., C1-C12 for straight chain, C3-C12 for branched chain), and more preferably 6 or fewer, and even more preferably 4 or fewer. Likewise, preferred cycloalkyls have from 3-10 carbon atoms in their ring structure, and more preferably have 5, 6 or 7 carbons in the ring structure. A C1-7 heteroalkyl, for example, includes from 1 to 6 carbon atoms in addition to one or more heteroatoms. Other numbers of atoms and other types of atoms may be indicated in a similar manner.
Unless the number of carbons is otherwise specified, “lower alkyl” as used herein means an alkyl group, as defined above, but having from one to ten carbons, more preferably from one to six carbon atoms in its backbone structure, and even more preferably from one to four carbon atoms in its backbone structure. Likewise, “lower alkenyl” and “lower alkynyl” have similar chain lengths. Preferred alkyl groups are lower alkyls. In preferred embodiments, a substituent designated herein as alkyl is a lower alkyl.
The terms “halogen” and “halo” are used interchangeably herein and designate —F, —Cl, —Br or —I; the term “sulfhydryl” means —SH; and the term “hydroxyl” means —OH.
The term “methyl” refers to the monovalent radical —CH3, and the term “methoxyl” refers to the monovalent radical —CH2OH.
The term “aralkyl” or “arylalkyl”, as used herein, refers to an alkyl group substituted with an aryl group (e.g., an aromatic or heteroaromatic group).
The terms “alkenyl” and “alkynyl” refer to unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double or triple bond respectively.
The term “aryl” as used herein includes 5-, 6- and 7-membered single-ring aromatic groups that may include from zero to four heteroatoms, for example, benzene, pyrrole, furan, thiophene, imidazole, oxazole, thiazole, triazole, pyrazole, pyridine, pyrazine, pyridazine and pyrimidine, and the like. Those aryl groups having heteroatoms in the ring structure may also be referred to as “aryl heterocycles” or “heteroaromatics.” The aromatic ring can be substituted at one or more ring positions with such substituents as described above, for example, halogen, azide, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, alkoxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, sulfonamido, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moieties, —CF3, —CN, or the like. The term “aryl” also includes polycyclic ring systems having two or more cyclic rings in which two or more carbons are common to two adjoining rings (the rings are “fused rings”) wherein at least one of the rings is aromatic, e.g., the other cyclic rings can be cycloalkyls, cycloalkenyls, cycloalkynyls, aryls and/or heterocyclyls.
The terms ortho, meta and para apply to 1,2-, 1,3- and 1,4-disubstituted benzenes, respectively. For example, the names 1,2-dimethylbenzene and ortho-dimethylbenzene are synonymous.
The terms “heterocyclyl” or “heterocyclic group” or “heteroaryl” refer to 3- to 10-membered ring structures, more preferably 3- to 7-membered rings, whose ring structures include one to four heteroatoms. Heterocycles can also be polycycles. Heterocyclyl groups include, for example, thiophene, thianthrene, furan, pyran, isobenzofuran, chromene, xanthene, phenoxathiin, pyrrole, imidazole, pyrazole, isothiazole, isoxazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, pyrimidine, phenanthroline, phenazine, phenarsazine, phenothiazine, furazan, phenoxazine, pyrrolidine, oxolane, thiolane, oxazole, piperidine, piperazine, morpholine, lactones, lactams such as azetidinones and pyrrolidinones, sultams, sultones, and the like. The heterocyclic ring can be substituted at one or more positions with such substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moiety, —CF3, —CN, or the like.
As used herein, the definition of each expression, e.g., alkyl, m, n, etc., when it occurs more than once in any structure, is intended to be independent of its definition elsewhere in the same structure.
It will be understood that “substitution” or “substituted with” includes the implicit proviso that such substitution is in accordance with permitted valence of the substituted atom and the substituent, and that the substitution results in a stable compound, e.g., which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, etc.
As used herein, the term “substituted” is contemplated to include all permissible substituents of organic compounds. In a broad aspect, the permissible substituents include acyclic and cyclic, branched and unbranched, carbocyclic and heterocyclic, aromatic and nonaromatic substituents of organic compounds. Illustrative substituents include, for example, those described herein above. The permissible substituents can be one or more and the same or different for appropriate organic compounds, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, heterocyclyl, aromatic or heteroaromatic moiety, —CF3, —CN, or the like. For purposes of this invention, the heteroatoms such as nitrogen may have hydrogen substituents and/or any permissible substituents of organic compounds described herein which satisfy the valences of the heteroatoms. This invention is not intended to be limited in any manner by the permissible substituents of organic compounds.
Certain compounds of the present invention may exist in particular geometric or stereoisomeric forms. The present invention contemplates all such compounds, including cis- and trans-isomers, R- and S-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention. Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention. In certain embodiments, the present invention relates to a compound represented by any of the structures outlined herein, wherein the compound is a single stereoisomer.
If, for instance, a particular enantiomer of a compound of the present invention is desired, it may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers. Alternatively, where the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means well known in the art, and subsequent recovery of the pure enantiomers.
Contemplated equivalents of the compounds described above include compounds which otherwise correspond thereto, and which have the same general properties thereof (e.g., functioning as inhibitors of cellular necrosis), wherein one or more simple variations of substituents are made which do not adversely affect the efficacy of the compound. In general, the compounds of the present invention may be prepared by the methods illustrated in the general reaction schemes as, for example, described below, or by modifications thereof, using readily available starting materials, reagents and conventional synthesis procedures. In these reactions, it is also possible to make use of variants, which are in themselves known, but are not mentioned here.
For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 67th Ed., 1986-87, inside cover.
Definitions Specific to Non-Nec-1b Compounds
The following definitions apply to all compounds disclosed herein with the exception of Nec-1b compounds, for which alternative definitions are provided above.
In the generic descriptions of non-Nec-1b compounds of this invention, the number of atoms of a particular type in a substituent group is generally given as a range, e.g., an alkyl group containing from 1 to 7 carbon atoms or C1-7 alkyl. Reference to such a range is intended to include specific references to groups having each of the integer number of atoms within the specified range. For example, an alkyl group from 1 to 7 carbon atoms includes each of C1, C2, C3, C4, C5, C6, and C7. A C1-7 heteroalkyl, for example, includes from 1 to 6 carbon atoms in addition to one or more heteroatoms. Other numbers of atoms and other types of atoms may be indicated in a similar manner.
As used herein, the terms “alkyl” and the prefix “alk-” are inclusive of both straight chain and branched chain groups and of cyclic groups, i.e., cycloalkyl. If not specified, alkyl means C1-7 alkyl. Cyclic groups can be monocyclic or polycyclic and preferably have from 3 to 6 ring carbon atoms, inclusive. Exemplary cyclic groups include cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl groups. The C1-7 alkyl group may be substituted or unsubstituted. C1-7 alkyls include, without limitation, methyl; ethyl; n-propyl; isopropyl; cyclopropyl; cyclopropylmethyl; cyclopropylethyl; n-butyl; iso-butyl; sec-butyl; tert-butyl; cyclobutyl; cyclobutylmethyl; cyclobutylethyl; n-pentyl; cyclopentyl; cyclopentylmethyl; cyclopentylethyl; 1-methylbutyl; 2-methylbutyl; 3-methylbutyl; 2,2-dimethylpropyl; 1-ethylpropyl; 1,1-dimethylpropyl; 1,2-dimethylpropyl; 1-methylpentyl; 2-methylpentyl; 3-methylpentyl; 4-methylpentyl; 1,1-dimethylbutyl; 1,2-dimethylbutyl; 1,3-dimethylbutyl; 2,2-dimethylbutyl; 2,3-dimethylbutyl; 3,3-dimethylbutyl; 1-ethylbutyl; 2-ethylbutyl; 1,1,2-trimethylpropyl; 1,2,2-trimethylpropyl; 1-ethyl-1-methylpropyl; 1-ethyl-2-methylpropyl; and cyclohexyl.
By “C2-7 alkenyl” is meant a branched or unbranched hydrocarbon group containing one or more double bonds and having from 2 to 7 carbon atoms. A C2-7 alkenyl may optionally include monocyclic or polycyclic rings, in which each ring desirably has from three to six members. The C2-7 alkenyl group may be substituted or unsubstituted. C2-7 alkenyls include, without limitation, vinyl; allyl; 2-cyclopropyl-1-ethenyl; 1-propenyl; 1-butenyl; 2-butenyl; 3-butenyl; 2-methyl-1-propenyl; 2-methyl-2-propenyl; 1-pentenyl; 2-pentenyl; 3-pentenyl; 4-pentenyl; 3-methyl-1-butenyl; 3-methyl-2-butenyl; 3-methyl-3-butenyl; 2-methyl-1-butenyl; 2-methyl-2-butenyl; 2-methyl-3-butenyl; 2-ethyl-2-propenyl; 1-methyl-1-butenyl; 1-methyl-2-butenyl; 1-methyl-3-butenyl; 2-methyl-2-pentenyl; 3-methyl-2-pentenyl; 4-methyl-2-pentenyl; 2-methyl-3-pentenyl; 3-methyl-3-pentenyl; 4-methyl-3-pentenyl; 2-methyl-4-pentenyl; 3-methyl-4-pentenyl; 1,2-dimethyl-1-propenyl; 1,2-dimethyl-1-butenyl; 1,3-dimethyl-1-butenyl; 1,2-dimethyl-2-butenyl; 1,1-dimethyl-2-butenyl; 2,3-dimethyl-2-butenyl; 2,3-dimethyl-3-butenyl; 1,3-dimethyl-3-butenyl; 1,1-dimethyl-3-butenyl and 2,2-dimethyl-3-butenyl.
By “C2-7 alkynyl” is meant a branched or unbranched hydrocarbon group containing one or more triple bonds and having from 2 to 7 carbon atoms. A C2-7 alkynyl may optionally include monocyclic, bicyclic, or tricyclic rings, in which each ring desirably has five or six members. The C2-7 alkynyl group may be substituted or unsubstituted. C2-7 alkynyls include, without limitation, ethynyl, 1-propynyl, 2-propynyl, 1-butynyl, 2-butynyl, 3-butynyl, 1-pentynyl, 2-pentynyl, 3-pentynyl, 4-pentynyl, 5-hexene-1-ynyl, 2-hexynyl, 3-hexynyl, 4-hexynyl, 5-hexynyl; 1-methyl-2-propynyl; 1-methyl-2-butynyl; 1-methyl-3-butynyl; 2-methyl-3-butynyl; 1,2-dimethyl-3-butynyl; 2,2-dimethyl-3-butynyl; 1-methyl-2-pentynyl; 2-methyl-3-pentynyl; 1-methyl-4-pentynyl; 2-methyl-4-pentynyl; and 3-methyl-4-pentynyl.
By “C2-9 heterocyclyl” or “C2-9heteroaryl” is meant a stable 5- to 7-membered monocyclic or 7- to 14-membered bicyclic heterocyclic ring which is saturated partially unsaturated or unsaturated (aromatic), and which consists of 2 to 9 carbon atoms and 1, 2, 3 or 4 heteroatoms independently selected from the group consisting of N, O, and S and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. The heterocyclyl group may be substituted or unsubstituted. The nitrogen and sulfur heteroatoms may optionally be oxidized. The heterocyclic ring may be covalently attached via any heteroatom or carbon atom which results in a stable structure, e.g., an imidazolinyl ring may be linked at either of the ring-carbon atom positions or at the nitrogen atom. A nitrogen atom in the heterocycle may optionally be quaternized. Preferably when the total number of S and O atoms in the heterocycle exceeds 1, then these heteroatoms are not adjacent to one another. Heterocycles include, without limitation, 1H-indazole, 2-pyrrolidonyl, 2H,6H-1,5,2-dithiazinyl, 2H-pyrrolyl, 3H-indolyl, 4-piperidonyl, 4aH-carbazole, 4H-quinolizinyl, 6H-1,2,5-thiadiazinyl, acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazalonyl, carbazolyl, 4aH-carbazolyl, b-carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H-1,5,2-dithiazinyl, dihydrofuro[2,3-b]tetrahydrofuran, furanyl, furazanyl, imidazolidinyl, imidazolinyl, imidazolyl, 1H-indazolyl, indolenyl, indolinyl, indolizinyl, indolyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, morpholinyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, oxazolidinyl, oxazolyl, oxazolidinylperimidinyl, phenanthridinyl, phenanthrolinyl, phenarsazinyl, phenazinyl, phenothiazinyl, phenoxathiinyl, phenoxazinyl, phthalazinyl, piperazinyl, piperidinyl, pteridinyl, piperidonyl, 4-piperidonyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, pyrrolyl, quinazolinyl, quinolinyl, 4H-quinolizinyl, quinoxalinyl, quinuclidinyl, carbolinyl, tetrahydrofuranyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, 6H-1,2,5-thiadiazinyl, 1,2,3-thiadiazolyl, 1,2,4-thiadiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, triazinyl, 1,2,3-triazolyl, 1,2,4-triazolyl, 1,2,5-triazolyl, 1,3,4-triazolyl, xanthenyl. Preferred 5 to 10 membered heterocycles include, but are not limited to, pyridinyl, pyrimidinyl, triazinyl, furanyl, thienyl, thiazolyl, pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, tetrazolyl, benzofuranyl, benzothiofuranyl, indolyl, benzimidazolyl, 1H-indazolyl, oxazolidinyl, isoxazolidinyl, benzotriazolyl, benzisoxazolyl, oxindolyl, benzoxazolinyl, quinolinyl, and isoquinolinyl. Preferred 5 to 6 membered heterocycles include, without limitation, pyridinyl, pyrimidinyl, triazinyl, furanyl, thienyl, thiazolyl, pyrrolyl, piperazinyl, piperidinyl, pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, and tetrazolyl.
By “C6-12 aryl” is meant an aromatic group having a ring system comprised of carbon atoms with conjugated π electrons (e.g., phenyl). The aryl group has from 6 to 12 carbon atoms. Aryl groups may optionally include monocyclic, bicyclic, or tricyclic rings, in which each ring desirably has five or six members. The aryl group may be substituted or unsubstituted.
By “C7-14 alkaryl” is meant an alkyl substituted by an aryl group (e.g., benzyl, phenethyl, or 3,4-dichlorophenethyl) having from 7 to 14 carbon atoms.
By “C3-10 alkheterocyclyl” is meant an alkyl substituted heterocyclic group having from 7 to 14 carbon atoms in addition to one or more heteroatoms (e.g., 3-furanylmethyl, 2-furanylmethyl, 3-tetrahydrofuranylmethyl, or 2-tetrahydrofuranylmethyl).
By “C1-7 heteroalkyl” is meant a branched or unbranched alkyl, alkenyl, or alkynyl group having from 1 to 7 carbon atoms in addition to 1, 2, 3 or 4 heteroatoms independently selected from the group consisting of N, O, S, and P. Heteroalkyls include, without limitation, tertiary amines, secondary amines, ethers, thioethers, amides, thioamides, carbamates, thiocarbamates, hydrazones, imines, phosphodiesters, phosphoramidates, sulfonamides, and disulfides. A heteroalkyl may optionally include monocyclic, bicyclic, or tricyclic rings, in which each ring desirably has three to six members. The heteroalkyl group may be substituted or unsubstituted.
By “acyl” is meant a chemical moiety with the formula R—C(O)—, wherein R is selected from C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, or C1-7 heteroalkyl.
For any of the above definitions, exemplary substituents include alkoxy; aryloxy; sulfhydryl; alkylthio; arylthio; halide; hydroxyl; fluoroalkyl; perfluoralkyl; hydroxyalkyl; alkylsulfinyl; alkylsulfonyl; azido; nitro; oxo; acyl derivatives of hydroxyalkyl; —CO2RA; —C(O)NRBRC; —SO2RD; —SO2NRERF; and —NRGRH; where each of RA, RB, RC, RD, RE, RF, RG, and RH is, independently, selected from H, C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, C1-7 heteroalkyl, and acyl.
By “halide” is meant bromine, chlorine, iodine, or fluorine.
By “fluoroalkyl” is meant an alkyl group that is substituted with a fluorine.
By “perfluoroalkyl” is meant an alkyl group consisting of only carbon and fluorine atoms.
By “hydroxyalkyl” is meant a chemical moiety with the formula —(R) —OH, wherein R is selected from C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, or C1-7 heteroalkyl.
By “alkoxy” is meant a chemical substituent of the formula —OR, wherein R is selected from C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, or C1-7 heteroalkyl.
By “aryloxy” is meant a chemical substituent of the formula —OR, wherein R is a C6-12 aryl group.
By “alkylthio” is meant a chemical substituent of the formula —SR, wherein R is selected from C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, or C1-7 heteroalkyl.
By “arylthio” is meant a chemical substituent of the formula —SR, wherein R is a C6-12 aryl group.
By “saccharide” is meant an aldose or a ketose, either as a monosaccharide or part of a disaccharide or polysaccharide. Saccharides include glycose, glycosamine, aldohexoses, ketohexoses, aldopentose, ketopentose, disaccharides, polysaccharides of 3-20 saccharide units, and deoxy and halide (e.g., fluorinated), amine, alkanoate, sulfate, and/or phosphate derivatives thereof. Suitable monosaccharides include, but are not limited to, any of several simple open or closed chain sugars (in the L or D configuration), typically having 5 or 6 carbons (a pentose monosaccharide or a hexose monosaccharide), as well as 7 carbons (heptose monosaccharide). Included are sugar derivatives in which the ring oxygen atom has been replaced by carbon, nitrogen or sulfur, amino sugars in which a hydroxyl substituent on the simple sugar is replaced with an amino group or sugars having a double bond between two adjacent carbon atoms. Saccharides which can be used in the compounds and methods of the invention include, without limitation, rhamnose, glucose, digitoxose, digitalose, digginose, sarmentose, vallarose, fructose, glucosamine, 5-thio-D-glucose, nojirimycin, deoxynojirimycin, 1,5-anhydro-D-sorbitol, 2,5-anhydro-D-mannitol, 2-deoxy-D-galactose, 2-deoxy-D-glucose, 3-deoxy-D-glucose, allose, arabinose, arabinitol, fucitol, fucose, galactitol, glucitol, iditol, lyxose, mannitol, levo-rhamnitol, 2-deoxy-D-ribose, ribose, ribitol, ribulose, rhamnose, xylose, xylulose, allose, altrose, galactose, gulose, idose, levulose, mannose, psicose, sorbose, tagatose, talose, galactal, glucal, fucal, rhamnal, arabinal, xylal, valienamine, validamine, valiolamine, valiol, valiolon, valienol, valienone, glucuronic acid, galacturonic acid, N-acetylneuraminic acid, gluconic acid D-lactone, galactonic acid γ-lactone, galactonic acid δ-lactone, mannonic acid γ-lactone, D-altro-heptulose, D-manno-heptulose, D-glycero-D-manno-heptose, D-glycero-D-gluco-heptose, D-allo-heptulose, D-altro-3-heptulose, D-glycero-D-manno-heptitol, and D-glycero-D-altro-heptit-ol, among others). Desirably, the saccharide used in the compounds of the invention is of the formula:
wherein, R40 is F, Cl, CF3, OH, NH2, NHR40A, NR40BR40C, NHC(O)R40D, NHC(S)R40E, NHC(O)OR40F, NHC(S)OR40G, NHC(O)NHR40H, NHC(S)NHR40I, NHC(O)SR40J, NHC(S)SR40K, or NHS(O)2R40L, and where each of R40A, R40B, R40C, R40D, R40E, R40F, R40G, R40H, R40I, R40J, R40K, and R40L, independently, represents C1-7 alkyl, C2-7 alkenyl, C2-7 alkynyl, C2-6 heterocyclyl, C6-12 aryl, C7-14 alkaryl, C3-10 alkheterocyclyl, or C1-7 heteroalkyl.
Other features and advantages of the invention will be apparent from the following detailed description and from the claims.
Described herein are compounds, pharmaceutical compositions, kits, screening assays, and methods for treating a range of conditions. While this application focuses on conditions in which cell or tissue necrosis is a causative factor or result, any condition listed in Table 1 may be treated using the methods of the invention. Techniques for making and using the invention are now described in detail.
CompoundsNec-1 compounds, Nec-2 compounds, and Nec-3 compounds, defined above, are useful in the compositions, kits, and methods of the invention. Compounds of the invention can be synthesized according to methods known in the art. Methods of synthesis for exemplary Nec-1, Nec-2, and Nec-3 compounds are described, for example, in U.S. Patent Application Publication No. 2005/0119260; U.S. Pat. No. 6,756,394; Teng et al., Bioorg. Med. Chem. Lett. 15:5039-5044, 2005; and Degterev et al., Nat. Chem. Bio. 1:112-119, 2005, each of which is hereby incorporated by reference; and in the examples below.
Each Nec compound that fits one of the definitions above is considered to be described distinctly and individually herein.
Any of the compounds or pharmaceutical compositions of the invention can be used together with a set of instructions, i.e., to form a kit.
Structural Derivatives of Chemical Compounds that Decrease Necrosis
The small molecules identified to decrease necrosis may be structurally modified and subsequently used to decrease necrosis, or to treat a subject with a condition in which necrosis occurs. For example, the small molecules may be modified by any of the following processes: reduction of aliphatic double bonds; reduction of aliphatic ketones; substitution of nitro groups with protons, halides, or sulfates; reduction of C═O double bonds in flavone rings; elimination of oxygens attached to flavone rings; substitution of methoxyl groups with hydroxyl groups; attachment of hydroxyl and amino groups to benzyl rings; reduction of C═N double bonds; elimination of a fluoride or its substitution with a hydroxyl or other halide group; substitution of a hydrogen with an alkyl group; introduction of hydroxyl, methoxyl, amino, and nitro groups into the benzyl ring; reduction of the double bond in the position 2 of the indol; introduction of double bonds in the linker between indol and hydantoin moieties; reduction or alkylation of the thiourea moiety; reduction, alkylation, or acylation of the indol amino group; substitution of the hydantoin 3-methyl group with linear and branching alkyl groups of varying length, and with hydroxyl, methyl, or carboxyl functionalities; and reduction of the hydantoin ketone moiety.
The chemical compounds that decrease necrosis may be modified by one of the above processes or various combinations of the above processes. The methods used to generate structural derivatives of the small molecules that decrease necrosis are readily known to those skilled in the fields of organic and medicinal chemistry.
TherapyTherapy according to the invention may be performed alone or in conjunction with another therapy, and may be provided at home, the doctor's office, a clinic, a hospital's outpatient department, or a hospital. Any of the conditions listed in Table 1, alone or present in combination, can be treated using the compounds and methods of the invention. Treatment generally begins at a hospital so that the doctor can observe the therapy's effects closely and make any adjustments that are needed. The duration of the therapy depends on the age and condition of the patient, as well as how the patient responds to the treatment. Additionally, a person having a greater risk of developing a condition listed in Table 1 may receive prophylactic treatment to inhibit or delay symptoms of the disease.
Exemplary subsets of the conditions listed in Table 1 are shown in Tables 2, 3, and 4.
While any of the Nec compounds described herein can be used to treat any of the conditions listed in the above tables, it is desirable that the conditions in Table 1 be treated with Nec-1e compounds, Nec-2b compounds, or Nec-3b compounds; the conditions in Table 2 be treated with any of the Nec compounds; the conditions in Table 3 be treated with Nec-1c compounds; and the conditions in Table 4 be treated with Nec-1d compounds.
In some embodiments, the compounds and methods of the invention can be used to treat any of the following: a neurodegenerative disease of the central or peripheral nervous system, the result of retinal neuronal cell death, the result of cell death of cardiac muscle, the result of cell death of cells of the immune system; stroke, liver disease, pancreatic disease, the result of cell death associated with renal failure; heart, mesenteric, retinal, hepatic or brain ischemic injury, ischemic injury during organ storage, head trauma, septic shock, coronary heart disease, cardiomyopathy, bone avascular necrosis, sickle cell disease, muscle wasting, gastrointestinal disease, tuberculosis, diabetes, alteration of blood vessels, muscular dystrophy, graft-versus-host disease, viral infection, Crohn's disease, ulcerative colitis, asthma, and any condition in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor.
Exemplary neurodegenerative conditions are Alzheimer's disease, Huntington's disease, Parkinson's disease, amyotrophic lateral sclerosis, HIV-associated dementia, cerebral ischemia, amyotropic lateral sclerosis, multiple sclerosis, Lewy body disease, Menke's disease, Wilson's disease, Creutzfeldt-Jakob disease, and Fahr disease.
Exemplary muscular dystrophies or related diseases are Becker's muscular dystrophy, Duchenne muscular dystrophy, myotonic dystrophy, limb-girdle muscular dystrophy, Landouzy-Dejerine muscular dystrophy, facioscapulohumeral muscular dystrophy (Steinert's disease), myotonia congenita, Thomsen's disease, and Pompe's disease.
Muscle wasting can be associated with cancer, AIDS, congestive heart failure, and chronic obstructive pulmonary disease, as well as include necrotizing myopathy of intensive care
Conditions in which alteration in cell proliferation, differentiation or intracellular signaling is a causative factor include cancer and infection, e.g., by viruses (e.g., acute, latent and persistent), bacteria, fungi, or other microbes.
Exemplary viruses are human immunodeficiency virus (HIV), Epstein-Barr virus (EBV), cytomegalovirus (CMV), human herpesviruses (HHV), herpes simplex viruses (HSV), human T-Cell leukemia viruses (HTLV), Varicella-Zoster virus (VZV), measles virus, papovaviruses (JC and BK), hepatitis viruses, adenovirus, parvoviruses, and human papillomaviruses.
Compounds and methods of the invention can additionally be used to boost the immune system, whether or not the patient being treated has an immunocompromising condition. For example, a Nec compound can be used in a method to strengthen the immune system during immunization, e.g., by functioning as an adjuvant, or by being combined with an adjuvant.
Administration of Pharmaceutical Compositions and Formulations
Pharmaceutical compositions and formulations can be prepared utilizing the Nec-1 compounds, Nec-2 compounds, or Nec-3 compounds of the invention. Pharmaceutical compositions of the invention are prepared in a manner known to those skilled in the art, for example, by means of conventional dissolving, lyophilising, mixing, granulating or confectioning processes. Methods well known in the art for making formulations are found, for example, in Remington: The Science and Practice of Pharmacy, 20th ed., ed. A. R. Gennaro, 2000, Lippincott Williams & Wilkins, Philadelphia, and Encyclopedia of Pharmaceutical Technology, eds. J. Swarbrick and J. C. Boylan, 1988-1999, Marcel Dekker, New York.
A compound identified as capable of treating any of the conditions of Table 1, using any of the methods described herein, may be administered to patients or animals with a pharmaceutically-acceptable diluent, carrier, or excipient, in unit dosage form. The chemical compounds for use in such therapies may be produced and isolated by any standard technique known to those in the field of medicinal chemistry. Exemplary compounds suitable for treatment in the methods of the invention are Nec-1 compounds, Nec-2 compounds, and Nec-3 compounds. Conventional pharmaceutical practice may be employed to provide suitable formulations or compositions to administer the identified compound to patients suffering from a disease in which necrosis occurs. Administration may begin before the patient is symptomatic.
Any appropriate route of administration may be employed. For example, the therapy may be administered either directly to the site of a predicted cell death event (for example, by injection) or systemically (for example, by any conventional administration technique). Administration of the compound may also be parenteral, intravenous, intraarterial, subcutaneous, intramuscular, intracranial, intraorbital, ophthalmalic, intraventricular, intracapsular, intraspinal, intracisternal, intraperitoneal, intranasal, aerosol, by suppositories, or oral administration. Therapeutic formulations may be in the form of liquid solutions or suspensions; for oral administration, formulations may be in the form of tablets or capsules; and for intranasal formulations, in the form of powders, nasal drops, or aerosols. The dosage of the therapeutic compounds in a pharmaceutically-acceptable formulation depends on a number of factors, including the size and health of the individual patient. The dosage to deliver may be determined by one skilled in the art.
Formulations for parenteral administration may, for example, contain excipients, sterile water, or saline, polyalkylene glycols such as polyethylene glycol, oils of vegetable origin, or hydrogenated napthalenes. Biocompatible, biodegradable lactide polymer, lactide/glycolide copolymer, or polyoxyethylene-polyoxypropylene copolymers may be used to control the release of the compounds. Other potentially useful parenteral delivery systems for compounds that decreases necrosis include ethylene-vinyl acetate copolymer particles, osmotic pumps, implantable infusion systems, and liposomes. Formulations for inhalation may contain excipients, for example, lactose, or may be aqueous solutions containing, for example, polyoxyethylene-9-lauryl ether, glycocholate and deoxycholate, or may be oily solutions for administration in the form of nasal drops, or as a gel.
The compounds, compositions, and methods of the present invention may be used to treat a number of diseases, as described herein. For example, the methods described herein allow for a decrease in cell death occurring through a necrosis pathway. The invention also provides compounds and methods for treating diseases in which necrosis occurs. These compounds and methods can be used to treat conditions such as a neurodegenerative disease, stroke, liver disease, pancreatic disease, ischemic heart or brain injury or other ischemic injuries, head trauma, septic shock, coronary heart disease, gastrointestinal disease, tuberculosis, alteration of blood vessels, viral infection, such as HIV, or conditions associated with a viral infection such as AIDS.
Examples of uses of any pharmaceutical composition of the present invention include treating or ameliorating cell death in the central or peripheral nervous system, retinal neurons, cardiac muscle or immune system cells of an animal; treating or preventing polycystic kidney disease, renal amyloidosis, acute renal failure, cyclosporine A induced murin tubular epithelial cell death, HIV-induced nephropathy or anemia/erythropoiesis in an animal; protecting a mammalian organ or tissue from cell death due to deprivation of normal blood supply; reducing or preventing cell death in a donor organ or tissue after it has been transplanted into a host due to the effects of host immune cells; reducing or preventing the death of mammalian sperm or eggs used in in vitro fertilization procedures; extending the lifespan of a mammalian cell line; treating or ameliorating hair loss or premature graying of the hair in a mammal; treating or ameliorating skin damage of a mammal due to exposure to high levels of radiation, heat or chemicals; treating or ameliorating sepsis in an animal; treating or ameliorating hepatitis in an animal; treating or ameliorating hereditary tyrosinemia type 1 in an animal; treating or ameliorating chronic alcohol ingestion induced buccal mucosa cell death in an animal; treating or ameliorating radiation or ultraviolet-irradiation induced cell death in an animal; treating or ameliorating organ cell death after burn injury; treating or ameliorating small bowel tissue injury after intestinal ischemia-reperfusion; and treating, ameliorating or preventing oral mucositis, gastrointestinal mucositis, bladder mucositis, proctitis, bone marrow cell death, skin cell death or hair loss resulting from chemotherapy or radiation therapy of cancer in an animal.
If desired, treatment with a compound identified according to the methods described above, may be combined with more traditional therapies for a disease characterized by cell death, such as tacrine hydrochloride for the treatment of Alzheimer's disease, or interferon α-1a for the treatment of multiple sclerosis.
Dosage
Regardless of the route of administration selected, the compounds of the present invention, which may be used in a suitable hydrated form, and/or the pharmaceutical compositions of the present invention, are formulated into pharmaceutically-acceptable dosage forms by conventional methods known to those of skill in the art.
Actual dosage levels of the active ingredients in the pharmaceutical compositions of this invention may be varied so as to obtain an amount of the active ingredient that is effective to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
The selected dosage level will depend upon a variety of factors including the activity of the particular compound of the present invention employed, or the ester, salt or amide thereof, the route of administration, the time of administration, the rate of excretion or metabolism of the particular compound being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular compound employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts. A daily, weekly, or monthly dosage (or other time interval) can be used.
A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the compounds of the invention employed in the pharmaceutical composition at levels lower than that required to achieve the desired therapeutic effect and then gradually increasing the dosage until the desired effect is achieved.
In general, a suitable daily dose of a compound of the invention will be that amount of the compound that is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above. Generally doses of the compounds of this invention for a patient, when used for the indicated effects, will range from about 0.0001 to about 100 mg per kg of body weight per day. Preferably the daily dosage will range from 0.001 to 50 mg of compound per kg of body weight, and even more preferably from 0.01 to 10 mg of compound per kg of body weight.
Combination Therapy
If desired, treatment with Nec compounds can be combined with therapies for the treatment of any of the conditions of Table 1, e.g., conditions involving necrosis or ischemia. Such treatments include surgery, radiotherapy, chemotherapy, or the administration of one or more additional compounds. Exemplary compounds suitable for combination therapy with Nec compounds are described below.
Compounds of the inventions can be administered in combination with compounds that are apoptosis inhibitors, i.e., compounds that inhibit apoptosis, including but not limited to reversible and irreversible caspase inhibitors. An example of an apoptosis inhibitor includes zVAD (N-benzyloxycarbonyl-Val-Ala-Asp-(OMe) fluoromethyl ketone), IETD (N-acetyl-Ile-Glu-Thr-Asp-al) (SEQ ID NO: 1), YVAD (N-benzyloxycarbonyl-Tyr-Val-Ala-Asp-(OMe) fluoromethyl ketone) (SEQ ID NO: 2), DEVD (N-[2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoyl]-L-α-aspartyl-L-α-glutamyl-N-[(1S)-1-(carboxymethyl)-3-fluoro-2-oxopropyl]-L-Valinamide) (SEQ ID NO: 3), and LEHD (N-acetyl-Leu-Glu-His-Asp-al) (SEQ ID NO: 4).
In some instances, the compounds of the invention are administered in combination with PARP poly(ADP-ribose) polymerase inhibitors. Non-limiting examples of PARP inhibitors include 6(5H)-Phenanthridinone, 4-Amino-1,8-naphthalimide, 1,5-Isoquinolinediol, and 3-Aminobenzamide.
Compounds of the invention can also be administered in combination with Src inhibitors. Src proteins are mammalian cytoplasmic tyrosine kinases that play an extensive role in signal transduction. Examples of Src inhibitors include but are not limited to: PP1(1-(1,1-dimethylethyl)-1-(4-methylphenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine), PP2 (3-(4-chlorophenyl)-1-(1,1-dimethylethyl)-1H-pyr-azolo[3,4-d]pyrimidin-4-amine), damnacanthal (3-hydroxy-1-methoxy-2-anthra-quinonecarboxaldehyde), and SU-5565.
The methods of the invention involve, in some aspects, combinations of compounds that are inhibitors of cellular necrosis (e.g., heterocyclic thiohydantoin, hydantoin, oxazolidinone, thioxo-oxazolidinone, pyrimidinone, or oxazinanone compounds, or combinations thereof) with agents for the treatment of cardiovascular disorders. Such agents include anti-inflammatory agents, anti-thrombotic agents, anti-platelet agents, fibrinolytic agents, lipid reducing agents, direct thrombin inhibitors, glycoprotein II b/IIIa receptor inhibitors, agents that bind to cellular adhesion molecules and inhibit the ability of white blood cells to attach to such molecules (e.g. anti-cellular adhesion molecule antibodies), calcium channel blockers, beta-adrenergic receptor blockers, cyclooxygenase-2 inhibitors, angiotensin system inhibitors, and any combinations thereof. One preferred agent is aspirin.
Anti-inflammatory agents include alclofenac; alclometasone dipropionate; algestone acetonide; alpha amylase; amcinafal; amcinafide; amfenac sodium; amiprilose hydrochloride; anakinra; anirolac; anitrazafen; apazone; balsalazide disodium; bendazac; benoxaprofen; benzydamine hydrochloride; bromelains; broperamole; budesonide; carprofen; cicloprofen; cintazone; cliprofen; clobetasol propionate; clobetas one butyrate; clopirac; cloticas one propionate; cormethasone acetate; cortodoxone; deflazacort; desonide; desoximetasone; dexamethasone dipropionate; diclofenac potassium; diclofenac sodium; diflorasone diacetate; diflumidone sodium; diflunisal; difluprednate; diftalone; dimethyl sulfoxide; drocinonide; endrysone; enlimomab; enolicam sodium; epirizole; etodolac; etofenamate; felbinac; fenamole; fenbufen; fenclofenac; fenclorac; fendosal; fenpipalone; fentiazac; flazalone; fluazacort; flufenamic acid; flumizole; flunisolide acetate; flunixin; flunixin meglumine; fluocortin butyl; fluorometholone acetate; fluquazone; flurbiprofen; fluretofen; fluticasone propionate; furaprofen; furobufen; halcinonide; halobetasol propionate; halopredone acetate; ibufenac; ibuprofen; ibuprofen aluminum; ibuprofen piconol; ilonidap; indomethacin; indomethacin sodium; indoprofen; indoxole; intrazole; isoflupredone acetate; isoxepac; isoxicam; ketoprofen; lofemizole hydrochloride; lomoxicam; loteprednol etabonate; meclofenamate sodium; meclofenamic acid; meclorisone dibutyrate; mefenamic acid; mesalamine; meseclazone; methylprednisolone suleptanate; morniflumate; nabumetone; naproxen; naproxen sodium; naproxol; nimazone; olsalazine sodium; orgotein; orpanoxin; oxaprozin; oxyphenbutazone; paranyline hydrochloride; pentosan polysulfate sodium; phenbutazone sodium glycerate; pirfenidone; piroxicam; piroxicam cinnamate; piroxicam olamine; pirprofen; prednazate; prifelone; prodolic acid; proquazone; proxazole; proxazole citrate; rimexolone; romazarit; salcolex; salnacedin; salsalate; salycilates; sanguinarium chloride; seclazone; sermetacin; sudoxicam; sulindac; suprofen; talmetacin; talniflumate; talosalate; tebufelone; tenidap; tenidap sodium; tenoxicam; tesicam; tesimide; tetrydamine; tiopinac; tixocortol pivalate; tolmetin; tolmetin sodium; triclonide; triflumidate; zidometacin; glucocorticoids; and zomepirac sodium.
Anti-thrombotic and fibrinolytic agents include plasminogen (to plasmin via interactions of prekallikrein, kininogens, factors XII, XIIIa, plasminogen proactivator, and tissue plasminogen activator (TPA)) streptokinase; urokinase: anisoylated plasminogen-streptokinase activator complex; pro-urokinase (pro-UK); rTPA (alteplase or activase); rPro-UK; abbokinase; eminase; sreptase anagrelide hydrochloride; bivalirudin; dalteparin sodium; danaparoid sodium; dazoxiben hydrochloride; efegatran sulfate; enoxaparin sodium; ifetroban; ifetroban sodium; tinzaparin sodium; retaplase; trifenagrel; warfarin; and dextrans.
Anti-platelet agents include clopridogrel; sulfinpyrazone; aspirin; dipyridamole; clofibrate; pyridinol carbamate; PGE; glucagon; antiserotonin drugs; caffeine; theophyllin; pentoxifyllin; ticlopidine; and anagrelide.
Lipid reducing agents include gemfibrozil, cholystyramine, colestipol, nicotinic acid, probucol, lovastatin, fluvastatin, simvastatin, atorvastatin, pravastatin, and cirivastatin.
Direct thrombin inhibitors include hirudin, hirugen, hirulog, agatroban, PPACK, and thrombin aptamers.
Glycoprotein IIb/IIIa receptor inhibitors include both antibodies and non-antibodies, and include but are not limited to ReoPro (abcixamab), lamifiban, and tirofiban.
Calcium channel blockers are a chemically diverse class of compounds having important therapeutic value in the control of a variety of diseases including several cardiovascular disorders, such as hypertension, angina, and cardiac arrhythmias (Fleckenstein, Cir. Res. 52:13-16 (1983); Fleckenstein, Experimental Facts and Therapeutic Prospects, John Wiley, New York (1983); McCall, D., Curr. Pract. Cardiol. 10:1-11 (1985)). Calcium channel blockers are a heterogenous group of drugs that prevent or slow the entry of calcium into cells by regulating cellular calcium channels. (Remington, The Science and Practice of Pharmacy, Nineteenth Edition, Mack Publishing Company, Eaton, Pa., p. 963 (1995)). Most of the currently available calcium channel blockers, and useful according to the present invention, belong to one of three major chemical groups of drugs, the dihydropyridines, such as nifedipine, the phenyl alkyl amines, such as verapamil, and the benzothiazepines, such as diltiazem. Other calcium channel blockers useful according to the invention, include, but are not limited to, aminone, amlodipine, bencyclane, felodipine, fendiline, flunarizine, isradipine, nicardipine, nimodipine, perhexylene, gallopamil, tiapamil and tiapamil analogues (such as 1993RO-11-2933), phenyloin, barbiturates, and the peptides dynorphin, omega-conotoxin, and omega-agatoxin, and pharmaceutically acceptable salts thereof.
Beta-adrenergic receptor blocking agents are a class of drugs that antagonize the cardiovascular effects of catecholamines in angina pectoris, hypertension, and cardiac arrhythmias. Beta-adrenergic receptor blockers include, but are not limited to, atenolol, acebutolol, alprenolol, befunolol, betaxolol, bunitrolol, carteolol, celiprolol, hydroxalol, indenolol, labetalol, levobunolol, mepindolol, methypranol, metindol, metoprolol, metrizoranolol, oxprenolol, pindolol, propranolol, practolol, practolol, sotalolnadolol, tiprenolol, tomalolol, timolol, bupranolol, penbutolol, trimepranol, 2-(3-(1,1-dimethylethyl)-amino-2-hyd-roxypropoxy)-3-pyridenecarbonitril HCl, 1-butylamino-3-(2,5-dichlorophenoxy-)-2-propanol, 1-isopropylamino-3-(4-(2-cyclopropylmethoxyethyl)phenoxy)-2-propanol, 3-isopropylamino-1-(7-methylindan-4-yloxy)-2-butanol, 2-(3-t-butylamino-2-hydroxy-propylthio)-4-(5-carbamoyl-2-thienyl)thiazol,-7-(2-hydroxy-3-t-butylaminpropoxy)phthalide. These compounds can be used as isomeric mixtures, or in their respective levorotating or dextrorotating form.
Cyclooxygenase-2 (COX-2) is an enzyme complex present in most tissues that produces various prostaglandins and thromboxanes from arachidonic acid. A number of selective COX-2 inhibitors are known in the art. These include, but are not limited to, those described in U.S. Pat. Nos. 5,474,995, 5,521,213, 5,536,752, 5,550,142, 5,552,422, 5,604,253, 5,604,260, 5,639,780, 5,677,318, 5,691,374, 5,698,584, 5,710,140, 5,733,909, 5,789,413, 5,817,700, 5,849,943, 5,861,419, 5,922,742, 5,925,631, and 5,643,933. A number of the above-identified COX-2 inhibitors are prodrugs of selective COX-2 inhibitors and exert their action by conversion in vivo to the active and selective COX-2 inhibitors. The active and selective COX-2 inhibitors formed from the above-identified COX-2 inhibitor prodrugs are described in detail in PCT/WO95/00501, PCT/WO95/18799, and U.S. Pat. No. 5,474,995. Given the teachings of U.S. Pat. No. 5,543,297, a person of ordinary skill in the art would be able to determine whether an agent is a selective COX-2 inhibitor or a precursor of a COX-2 inhibitor.
Angiotensin system inhibitors are capable of interfering with the function, synthesis or catabolism of angiotensin II. These agents include, but are not limited to, angiotensin-converting enzyme (ACE) inhibitors, angiotensin II antagonists, angiotensin II receptor antagonists, agents that activate the catabolism of angiotensin II, and agents that prevent the synthesis of angiotensin I from which angiotensin II is ultimately derived. The renin-angiotensin system is involved in the regulation of hemodynamics and water and electrolyte balance. Factors that lower blood volume, renal perfusion pressure, or the concentration of Na+ in plasma tend to activate the system, while factors that increase these parameters tend to suppress its function.
Angiotensin I and angiotensin II are synthesized by the enzymatic renin-angiotensin pathway. The synthetic process is initiated when the enzyme renin acts on angiotensinogen, pseudoglobulin in blood plasma, to produce the decapeptide angiotensin I. Angiotensin I is converted by angiotensin converting enzyme (ACE) to angiotensin II (angiotensin-[1-8] octapeptide). The latter is an active pressor substance which has been implicated as a causative agent in several forms of hypertension in various mammalian species, e.g., humans.
Angiotensin (renin-angiotensin) system inhibitors are compounds that act to interfere with the production of angiotensin II from angiotensinogen or angiotensin I or interfere with the activity of angiotensin II. Such inhibitors are well known to those of ordinary skill in the art and include compounds that act to inhibit the enzymes involved in the ultimate production of angiotensin II, including renin and ACE. They also include compounds that interfere with the activity of angiotensin II, once produced. Examples of classes of such compounds include antibodies (e.g., to renin), amino acids and analogs thereof (including those conjugated to larger molecules), peptides (including peptide analogs of angiotensin and angiotensin I), pro-renin related analogs, etc. Among the most potent and useful renin-angiotensin system inhibitors are renin inhibitors, ACE inhibitors, and angiotensin II antagonists. In a preferred embodiment of the invention, the renin-angiotensin system inhibitors are renin inhibitors, ACE inhibitors, and angiotensin II antagonists.
Angiotensin II antagonists are compounds which interfere with the activity of angiotensin II by binding to angiotensin II receptors and interfering with its activity. Angiotensin II antagonists are well known and include peptide compounds and non-peptide compounds. Most angiotensin II antagonists are slightly modified congeners in which agonist activity is attenuated by replacement of phenylalanine in position 8 with some other amino acid; stability can be enhanced by other replacements that slow degeneration in vivo. Examples of angiotensin II antagonists include: peptidic compounds (e.g., saralasin, [(San1)(Val5)(Ala8)]-angiotensin-(1-8) octapeptide and related analogs); N-substituted imidazole-2-one (U.S. Pat. No. 5,087,634); imidazole acetate derivatives including 2-N-butyl-4-chloro-1-(2-chlorobenzile) imidazole-5-acetic acid (see Long et al., J. Pharmacol. Exp. Ther. 247(1), 1-7 (1988)); 4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridine-6-carboxylic acid and analog derivatives (U.S. Pat. No. 4,816,463); N2-tetrazole beta-glucuronide analogs (U.S. Pat. No. 5,085,992); substituted pyrroles, pyrazoles, and tryazoles (U.S. Pat. No. 5,081,127); phenyl and heterocyclic derivatives such as 1,3-imidazoles (U.S. Pat. No. 5,073,566); imidazo-fused 7-member ring heterocycles (U.S. Pat. No. 5,064,825); peptides (e.g., U.S. Pat. No. 4,772,684); antibodies to angiotensin II (e.g., U.S. Pat. No. 4,302,386); and aralkyl imidazole compounds such as biphenyl-methyl substituted imidazoles (e.g., EP Number 253,310, Jan. 20, 1988); ES8891 (N-morpholinoacetyl-(-1-naphthyl)-L-alanyl-(4, thiazolyl)-L-alanyl (35,45)-4-amino-3-hydroxy-5-cyclo-hexapentanoyl-N-hexylamide, Sankyo Company, Ltd., Tokyo, Japan); SKF 108566 (E-alpha-2-[2-butyl-1-(carboxy phenyl)methyl]1H-imidazole-5-yl[methylane]-2-thiophenepropanoic acid, Smith Kline Beecham Pharmaceuticals, PA); Losartan (DUP753/MK954, DuPont Merck Pharmaceutical Company); Remikirin (RO42-5892, F. Hoffman LaRoche AG); A2 agonists (Marion Merrill Dow) and certain non-peptide heterocycles (G.D.Searle and Company).
Angiotensin converting enzyme (ACE) is an enzyme which catalyzes the conversion of angiotensin I to angiotensin II. ACE inhibitors include amino acids and derivatives thereof, peptides, including di and tri peptides and antibodies to ACE which intervene in the renin-angiotensin system by inhibiting the activity of ACE thereby reducing or eliminating the formation of pressor substance angiotensin II. ACE inhibitors have been used medically to treat hypertension, congestive heart failure, myocardial infarction and renal disease. Classes of compounds known to be useful as ACE inhibitors include acylmercapto and mercaptoalkanoyl prolines such as captopril (U.S. Pat. No. 4,105,776) and zofenopril (U.S. Pat. No. 4,316,906), carboxyalkyl dipeptides such as enalapril (U.S. Pat. No. 4,374,829), lisinopril (U.S. Pat. No. 4,374,829), quinapril (U.S. Pat. No. 4,344,949), ramipril (U.S. Pat. No. 4,587,258), and perindopril (U.S. Pat. No. 4,508,729), carboxyalkyl dipeptide mimics such as cilazapril (U.S. Pat. No. 4,512,924) and benazapril (U.S. Pat. No. 4,410,520), phosphinylalkanoyl prolines such as fosinopril (U.S. Pat. No. 4,337,201) and trandolopril.
Renin inhibitors are compounds which interfere with the activity of renin. Renin inhibitors include amino acids and derivatives thereof, peptides and derivatives thereof, and antibodies to renin. Examples of renin inhibitors that are the subject of United States patents are as follows: urea derivatives of peptides (U.S. Pat. No. 5,116,835); amino acids connected by nonpeptide bonds (U.S. Pat. No. 5,114,937); di and tri peptide derivatives (U.S. Pat. No. 5,106,835); amino acids and derivatives thereof (U.S. Pat. Nos. 5,104,869 and 5,095,119); diol sulfonamides and sulfinyls (U.S. Pat. No. 5,098,924); modified peptides (U.S. Pat. No. 5,095,006); peptidyl beta-aminoacyl aminodiol carbamates (U.S. Pat. No. 5,089,471); pyrolimidazolones (U.S. Pat. No. 5,075,451); fluorine and chlorine statine or statone containing peptides (U.S. Pat. No. 5,066,643); peptidyl amino diols (U.S. Pat. Nos. 5,063,208 and 4,845,079); N-morpholino derivatives (U.S. Pat. No. 5,055,466); pepstatin derivatives (U.S. Pat. No. 4,980,283); N-heterocyclic alcohols (U.S. Pat. No. 4,885,292); monoclonal antibodies to renin (U.S. Pat. No. 4,780,401); and a variety of other peptides and analogs thereof (U.S. Pat. Nos. 5,071,837, 5,064,965, 5,063,207, 5,036,054, 5,036,053, 5,034,512, and 4,894,437).
Agents that bind to cellular adhesion molecules and inhibit the ability of white blood cells to attach to such molecules include polypeptide agents. Such polypeptides include polyclonal and monoclonal antibodies, prepared according to conventional methodology. Such antibodies already are known in the art and include anti-ICAM 1 antibodies as well as other such antibodies. Significantly, as is well-known in the art, only a small portion of an antibody molecule, the paratrope, is involved in the binding of the antibody to its epitope (see, in general, Clark, W. R. (1986) The Experimental Foundations of Modern Immunology, Wiley & Sons, Inc., New York; Roitt, I. (1991) Essential Immunology, 7th Ed., Blackwell Scientific Publications, Oxford). The pFc′ and Fc regions, for example, are effectors of the complement cascade but are not involved in antigen binding. An antibody from which the pFc′ region has been enzymatically cleaved, or which has been produced without the pFc′ region, designated an F(ab′)2 fragment, retains both of the antigen binding sites of an intact antibody. Similarly, an antibody from which the Fc region has been enzymatically cleaved, or which has been produced without the Fc region, designated an Fab fragment, retains one of the antigen binding sites of an intact antibody molecule. Proceeding further, Fab fragments consist of a covalently bound antibody light chain and a portion of the antibody heavy chain denoted Fd. The Fd fragments are the major determinant of antibody specificity (a single Fd Fragment may be associated with up to ten different light chains without altering antibody specificity) and Fd fragments retain epitope-binding ability in isolation.
Within the antigen-binding portion of an antibody, as is well-known in the art, there are complementarity determining regions (CDRs), which directly interact with the epitope of the antigen, and framework regions (Frs), which maintain the tertiary structure of the paratope (see, in general, Clar, 1986; Roitt, 1991). In both the heavy chain Fd fragment and the light chain of IgG immunoglobulins, there are four framework regions (FR1 through FR4) separated respectively by three complementarity determining regions (CDR1 through CDR3). The CDRs, and in particular the CDR3 regions, and more particularly the heavy chain CDR3, are largely responsible for antibody specificity.
It is now well-established in the art that the non-CDR regions of a mammalian antibody may be replaced with similar regions of conspecific or heterospecific antibodies while retaining the epitopic specificity of the original antibody. This is most clearly manifested in the development and use of “humanized” antibodies in which non-human CDRs are covalently joined to human FR and/or Fc/pFc′ regions to produce a functional antibody. Thus, for example, PCT International Publication Number WO 92/04381 teaches the production and use of humanized murine RSV antibodies in which at least a portion of the murine FR regions have been replaced by FR regions of human origin. Such antibodies, including fragments of intact antibodies with antigen-binding ability, are often referred to as “chimeric” antibodies.
Thus, as will be apparent to one of ordinary skill in the art, the present invention also provides for F(ab′)2, Fab, Fv and Fd fragments; chimeric antibodies in which the Fc and/or Fr and/or CDR1 and/or CDR2 and/or light chain CDR3 regions have been replaced by homologous human or non-human sequences; chimeric F(ab′)2 fragment antibodies in which the FR and/or CDR1 and/or CDR2 and/or light chain CDR3 regions have been replaced by homologous human or non-human sequences; chimeric Fab fragment antibodies in which the FR and/or CDR1 and/or CDR2 and/or light chain CDR3 regions have been replaced by homologous human or non-human sequences; and chimeric Fd fragment antibodies in which the FR and/or CDR1 and/or CDR2 regions have been replaced by homologous human or nonhuman sequences. The present invention also includes so-called single chain antibodies.
Thus, the invention involves polypeptides of numerous size and type that bind specifically to cellular adhesion molecules. These polypeptides may be derived also from sources other than antibody technology. For example, such polypeptide binding agents can be provided by degenerate peptide libraries which can be readily prepared in solution, in immobilized form or as phage display libraries. Combinatorial libraries also can be synthesized of peptides containing one or more amino acids. Libraries further can be synthesized of peptoids and non-peptide synthetic moieties.
Phage display can be particularly effective in identifying binding peptides useful according to the invention. Briefly, one prepares a phage library (using, e.g., m13, fd, or lambda phage), displaying inserts from 4 to about 80 amino acid residues using conventional procedures. The inserts may represent, for example, a completely degenerate or biased array. One then can select phage-bearing inserts which bind to the cellular adhesion molecule. This process can be repeated through several cycles of reselection of phage that bind to the cellular adhesion molecule. Repeated rounds lead to enrichment of phage bearing particular sequences. DNA sequences analysis can be conducted to identify the sequences of the expressed polypeptides. The minimal linear portion of the sequence that binds to the cellular adhesion molecule can be determined. One can repeat the procedure using a biased library containing inserts containing part of all of the minimal linear portion plus one or more additional degenerate residues upstream or downstream thereof. Yeast two-hybrid screening methods also may be used to identify polypeptides that bind to the cellular adhesion molecules. Thus, cellular adhesion molecules, or a fragment thereof, can be used to screen peptide libraries, including phage display libraries, to identify and select peptide binding partners of the cellular adhesion molecules.
Preventative Therapy
In a patient diagnosed with any of the conditions of Table 1, e.g., heart disease (e.g., coronary heart disease or ischemic heart injury) or degenerative disease (e.g., a neurodegenerative disease, such as Alzheimer's disease or Huntington's disease), any of the above therapies may be administered before the occurrence of the disease phenotype. In particular, compounds shown to decrease necrosis may be administered by any standard dosage and route of administration (as described above).
The methods of the instant invention may be used to decrease necrosis of a cell or to treat disorders described herein in any subject, for example, humans; domestic pets, such as, for example, canines or felines; or livestock.
Geldanamycin
Geldanamycin is an inhibitor of heat shock protein-90 (Hsp90), which is involved in the folding, activation and assembly of a wide range of proteins, including key proteins involved in signal transduction, cell cycle control and transcriptional regulation. The binding of geldanamycin to Hsp90 disrupts Hsp90-protein interactions, preventing the proteins from folding correctly and rendering them susceptible to proteasome-mediated destruction. Among these proteins are many mutated or overexpressed proteins implicated in cancer and other diseases, e.g., p53, Bcr-Abl kinase, Raf-1 kinase, Akt kinase, Npm-Alk kinase p185ErbB2 transmembrane kinase, Cdk4, Cdk6, Wee1, HER2/Neu (ErbB2), and hypoxia inducible factor-1α (HIF-1α) (see, e.g., U.S. Pat. No. 6,887,993). Geldanamycin is a well-known natural product, obtainable, for example, by culturing the producing organism, Streptomyces hygroscopicus var. geldanus NRRL 3602. Geldanamycin derivatives can be made semi-synthetically, by chemical modification of geldanamycin.
Any of the conditions listed in Table 1, e.g., those involving cellular necrosis or ischemia, can be treated using geldanamycin, or a derivative thereof, alone or in combination with one or more Nec compounds. Geldanamycin and derivatives thereof are described, e.g., in U.S. Pat. Nos. 6,887,993, 6,875,863, 6,872,715, 6,870,049, 6,855,705, 6,852,496, 4,261,989, and 3,987,035.
Screens to Identify Candidate CompoundsIdentification of Chemical Compounds that Decrease Cell Necrosis
After a cell receives an initial assault, one or both of the apoptotis or necrosis mechanisms of cell death may be activated. In the present invention, the necrosis pathway was focused upon. Several chemical assaults were used to induce cell death, including exposure to tumor necrosis factor alpha (TNFα) and β-amyloid protein. Various cell types were also used, including human neuroblastoma cells (SH-SY5Y) and human Jurkat T cells. In order to block the apoptosis mechanism, a general caspase inhibitor, Cbz-valine-alanine-aspartyl fluoromethyl ketone (zVAD-fmk, Polyerino and Patterson, J. Biol. Chem. 272:7013-7021, 1997), was given. This compound inhibits all caspases and consequently disrupts the apoptosis pathway. Any resulting cell death is assumed to arise from the necrosis mechanism. After administering zVAD-fmk and TNFα to the cells, test compounds were applied to the cells in attempts to rescue them. Therefore, compounds found to restore cell viability using this protocol are inhibitors of the necrosis pathway.
For example, in one approach, zVAD-fmk is added to the culture media of cells at high density (for example, 5×105 or 7.5×105 cells/ml), which are capable of undergoing necrosis in response to zVAD-fmk/TNFα. Candidate molecules, for example, chemical compounds from a chemical library, such as, for example, the library of compounds from ChemBridge Research Laboratories, San Diego, Calif.) are added, in varying concentrations to the cells, and the cells are then exposed to TNFα.
The occurrence of necrosis of the treated cells is then measured, for example, by measuring the cellular ATP level of the cells exposed to zVAD-fmk/TNFα (Crouch et al., J. Immunol. Methods 160:81-8, 1993; Storer et al., Mutat. Res. 368:59-101, 1996; and Cree et al., Toxicol. In Vitro 11:553-556, 1997). The level of necrosis in the presence of the candidate molecule is compared to the level of necrosis in the absence of the candidate molecule, all other factors (e.g., cell type and culture conditions) being equal. The importance of zVAD-fmk in the invention is to block cell death that may occur by apoptosis, so that cell death by necrosis can be fully unmasked.
In a second approach, a cell may be exposed to a candidate molecule that decreases necrosis at the same time it is exposed to either zVAD-fmk or TNFα. In a third approach, a cell may be exposed to zVAD-fmk and TNFα first, and then to a candidate compound. The level of necrosis that occurs following each of these approaches is measured as described above.
The effect of candidate molecules on necrosis induced by cell death stimuli, for example, TNFα or DMSO, may also be measured by other methods, for example, vital dye staining, using dyes such as trypan blue or acridine orange/ethidium bromide.
Compounds that decrease necrosis may be purified or substantially purified, or may be one component of a mixture of compounds, such as a pool of chemical compounds. In an assay of a mixture of compounds, the occurrence of necrosis is tested against progressively smaller subsets of the compound pool (e.g., produced by standard purification techniques such as HPLC or FPLC) until a single compound or minimal number of effective compounds is demonstrated to decrease necrosis. A molecule that promotes a decrease in necrosis induced by zVAD-fmk/TNFα is considered particularly useful in the invention; such a molecule may be used, for example, as a therapeutic to decrease necrosis, in a patient with a condition in which necrosis occurs, such as a neurodegenerative disease.
Chemical compounds that are found, by the methods described above, to effectively decrease necrosis induced, for example, by zVAD-fmk/TNFα in an in vitro system may be tested further in animal models. Particularly useful animal models include mouse and rat models of cell death, ischemic brain or heart injury or other ischemic injuries, head trauma, neurodegenerative diseases, coronary heart disease, and septic shock. Examples of such models include SOD or Huntington's disease gene transgenic mice, and other known models, such as those described by Li et al., Hum. Mol. Genet. 8:1227-12236, 1999; Levine et al., Neurosci. Res. 58:515-532, 1999; Vukosavic et al., J. Neurochem. 73:2460-2468, 1999; Gruney, J. Neurol. Sci. 152 suppl. 1:S67-73, 1997; Deshmukh et al., Am. J. Physiol. 273 (4 Pt 1):C1130-1135, 1997; and Isibashi et al., J. Immunol. 163:5666-5677, 1999. Compounds which demonstrate an ability to decrease necrosis in in vivo models may be used as therapeutics to prevent necrosis, as appropriate.
Identification of Chemical Compounds that Decrease zVAD-Fmk/DMSO-Induced Cell Necrosis
Methods for the identification of chemical compounds that decrease cell necrosis induced, for example, by zVAD-fmk/DMSO at a low cell density (e.g., 1×105 cells/ml) are achieved essentially as described above, except, the inducer of necrosis is zVAD-fmk/DMSO, rather than zVAD-fmk/TNFα.
RIP1
We have discovered that Nec compounds are capable of inhibiting RIP1 (receptor interacting protein 1) (see, e.g., Example 10). Thus, the invention provides for screening assays to identify candidate compounds in which RIP1 is the target molecule.
RIP1 is a unique death domain-containing kinase that has been shown to interact with Fas and TNFR1. RIP1 contains a N-terminal kinase domain with homology to both Ser/Thr and tyrosine kinases, a C-terminal death domain, and an intermediate domain (IM). Its kinase activity is not required for DR-induced apoptosis nor NFκB activation, which is regulated by the intermediate domain (IM) of RIP. RIP contributes to a wide range of cellular regulatory paradigms, including cytokines, e.g., TNFα and IL-1β, and Toll-like receptor 3 and 4 mediated induction of NFkB.
Kinase activity of RIP1 is essential for the alternative necrotic cell death pathway mediated by FasL, TNFα and TRAIL, which we subsequently termed necroptosis. We have analyzed the domains of RIP required for the death receptor-induced necroptosis in RIP-deficient clone of Jurkat cells, which are otherwise insensitive to this pathway due to the lack of RIP. As shown in
Based on our discovery, screening assays may be performed in which RIP1 is utilized as a target, and candidate compounds are assayed for their ability to bind to or otherwise inhibit RIP1. For example, assays that measure inhibition of autophosphorylation of RIP1 can be used. Alternatively, assays that measure binding of a candidate compound to RIP1 are useful in the methods of the invention. Many other variations of binding assays are known in the art and can be employed. RIP1 binding assays are described, e.g., in U.S. Pat. No. 6,211,337, which is hereby incorporated by reference.
To identify compounds that are specific for RIP1, screening assays can be performed using multiple targets. For example, for a given candidate compound, the binding, autophosphorylation, or other measure of target activity may be assayed for both RIP1 and RIP2, or alternatively both RIP1 and RIP3, and the results compared (see, e.g., Example 10). Candidate compounds that exert a greater effect on RIP1 than RIP2, RIP3, or another homologue or other molecule chosen for this purpose, are considered to be specific for RIP1, and may be particularly desirable in the methods of the invention.
Alternate Screening Assays
Any method for measuring protein interactions or inhibition of the activity of a target molecule (e.g., RIP1) may be utilized. Such methods include, but are not limited to fluorescence polarization assays, mass spectrometry (Nelson and Krone, J. Mol. Recognit., 12:77-93, 1999), surface plasmon resonance (Spiga et al., FEBS Lett., 511:33-35, 2002; Rich and Mizka, J. Mol. Recognit., 14:223-228, 2001; Abrantes et al., Anal. Chem., 73:2828-2835, 2001), fluorescence resonance energy transfer (FRET) (Bader et al., J. Biomol. Screen, 6:255-264, 2001; Song et al., Anal. Biochem. 291:133-41, 2001; Brockhoff et al., Cytometry, 44:338-248, 2001), bioluminescence resonance energy transfer (BRET) (Angers et al., Proc. Natl. Acad. Sci. USA, 97:3684-3689, 2000; Xu et al., Proc. Natl. Acad. Sci. USA, 96:151-156, 1999), fluorescence quenching (Engelborghs, Spectrochim. Acta A. Mol. Biomol. Spectrosc., 57:2255-2270, 1999; Geoghegan et al., Bioconjug. Chem. 11:71-77, 2000), fluorescence activated cell scanning/sorting (Barth et al., J. Mol. Biol., 301:751-757, 2000), ELISA, and radioimmunoassay (RIA).
Candidate Compounds
In general, candidate compounds used in the screening assays of the invention are identified from large libraries of both natural products, synthetic (or semi-synthetic) extracts or chemical libraries, according to methods known in the art.
Additional MethodsAntibodies and Reagents
FasL (used at 10 ng ml−1) and zVAD.fmk (used at 100 μM) were from Alexis Biochemicals. Human or mouse (used for MEF cells) TNF (used at 10 ng ml−1) was from Cell Sciences. Sytox Green, TO-PRO-3 and DiOC6 were from Molecular Probes. Propidium iodide was from Roche. The dimerizing agents AP1510 and AP20187 (both used at 100 nM) were obtained from Ariad Pharmaceuticals. CHX (used at 1 μg ml−1), antioxidants (N-acetyl cysteine (NAC), used at 2.5 mM; superoxide dismutase (SOD), 800 U ml−1; catalase (cat.), 1,400 U ml−1; vitamin E (vit. E), 5 mM), phalloidin-TRITC and all common chemicals were from Sigma. The following antibodies were used: mouse anti-β-tubulin (Stressgen), rabbit anti-LC3, rabbit anti-beclin-1 (Santa Cruz), rabbit anti-giantin (Covance), mouse anti-KDEL (Stressgen) and mouse anti-cytochrome c (Pharmingen). Secondary horseradish peroxidase (HRP)-conjugated antibodies were from Southern Biotech. Secondary Alexa 488-conjugated antibodies were from Molecular Probes; Cy3-conjugated antibodies were from Jackson ImmunoResearch.
Chemical Screening
We plated U937 cells in 384-well plates at 5,000-10,000 cells per well in 40-μl phenol red-free RPMI 1640 medium containing 100 μM zVAD.fmk and 40 ng ml−1 human TNFα using a Multidrop dispenser (Thermo Electron). We added 100 nl of the DiverSetE (5 mg ml−1 in DMSO, Chembridge) using a Seiko-based custom-built pin transfer robot (Institute of Chemistry and Cell Biology, Harvard Medical School). After 72 hours, we assessed cell viability using a luminescence-based ATP assay (ATPLite-M, PerkinElmer). We also dispensed cells not treated with TNFα in each plate as a positive control. We purchased Nec-1 and other preliminary positive hits from Chembridge for individual retesting.
Cell Viability Assays
We seeded cells in 96-well plates (white plates for luminescent assays; black plates for fluorescent assays; clear plates for MTT assay) at the density of 5,000-10,000 cells per well for adherent cells or 20,000-50,000 cells per well for suspension cells in 100 μl of the appropriate phenol red-free media. After incubation, we determined cell viability using one of the following methods. For the ATP assay, we used luminescence-based commercial kits (CellTiter-Glo, Promega or ATPLite-M, PerkinElmer) and analyzed luminescence using a Wallac Victor II plate reader (PerkinElmer). For Sytox assay, we incubated cells with 1 μM Sytox Green reagent for thirty minutes at 37° C., and then performed fluorescent reading. Subsequently, we added 5 μl of 20% Triton X-100 solution into each well to produce maximal lysis and incubated cells for one hour at 37° C., then performed the second reading. We calculated the ratio of values (percentage of dead cells in each well) before and after Triton treatment and normalized it to the relevant controls not subjected to cytotoxic stimuli, as indicated in figure legends. For the MTT assay, we used the CellTiter 96 AQueous Non-Radioactive Cell Proliferation Assay kit (Promega). For PI exclusion assays, we added 2 μg ml−1 PI into the medium and immediately analyzed samples using FACSCalibur (BD Biosciences). For PI-annexin V assay we used the ApoAlert Annexin V-EGFP Apoptosis Kit (Clontech). For DioC6 staining, we incubated cells with 40 nM DiOC6 for thirty minutes at 37° C., washed once and analyzed in FACSCalibur. For ROS analysis, we incubated cells with 5 μM dihydroethidium (Molecular Probes) for thirty minutes at 37° C., washed once and analyzed in FACSCalibur. We acquired bright-field images of the cells using an Axiovert 200 microscope (Zeiss).
Transient Focal Cerebral Ischemia in the Mouse
Animals were maintained in accordance with the “Guide for the Care and Use of Laboratory Animals” (National Research Council, 1996). We anesthetized spontaneously breathing adult male SV-129 mice (19-23 g; Taconic Farms) with 2% isoflurane and maintained them on 0.8-1% isoflurane in 70% N2O and 30% O2 using a Fluotec 3 vaporizer (Colonial Medical). We occluded the left MCA with an intraluminal 8-0 nylon monofilament (Ethicon) coated with a mixture of silicone resin (Xantopren, Bayer Dental) and a hardener (Elastomer Activator, Bayer Dental). The procedure lasted fifteen minutes, and the anesthesia was discontinued. We briefly reanesthetized animals two hours later with isoflurane, and withdrew the filament. Eighteen hours after reperfusion we divided forebrains into five coronal (2-mm) sections using a mouse brain matrix (RBM-2000C; Activational Systems), and stained the sections with 2% 2,3,5-triphenyltetrazolium chloride (Sigma). We quantified infarct areas using an image-analysis system (Bioquant IV, R & M Biometrics) and calculated infarct volume directly by adding the infarct volume in each section.
For drug administration, we dissolved 7-Cl-Nec-1 or other derivatives in 4% methyl-β-cyclodextrin (Sigma) solution in PBS and administered it through intracerebroventricular administration at the time points indicated. Typically, we performed two 2-μl injections of 4 mM stock solution (unless otherwise indicated). For preocclusion delivery, we performed injections five minutes before the onset of 2-h MCAO occlusion and immediately after the cessation of the occlusion, at the time of the reperfusion. For postocclusion delivery, we performed injections at the time of reperfusion after two hours of MCAO as well as two hours after the onset of reperfusion. In the case of infusion, we infused 20 μl of compound over a thirty minute time period. In the case of injection six hours after occlusion, we injected a single 4-μl dose. In the case of zVAD.fmk administration, we added it to the Nec-1 formulation and administered a total dose of 160 ng.
Cell Culture
We prepared mouse embryonic fibroblasts as in Nakagawa et al., Nature 403:98-103, 2000, and immortalized through infection with SV-40-encoding retrovirus. Atg5−/− MEF cells have been previously described (see, e.g., Kuma et al., Nature 432:1032-1036, 2004).
DNA Chip Analyses
We double purified mRNA from the cells using Poly(A)Purist kit (Ambion). Agilent DNA chip analysis was performed by Harvard Center for Genomics Research.
Immunofluorescence
We washed Balbc 3T3 cells in PBS, fixed the cells in 4% formaldehyde for fifteen minutes at 25° C., rinsed them twice in PBS, and permeabilized/blocked in 0.4% Triton X-100, 10% normal goat or donkey serum (Jackson Immunoresearch) in PBS for 30 minutes at 25° C. We incubated the samples with the appropriate primary antibodies, diluted according to the manufacturer's instructions in 0.1% Triton, 1% serum in PBS, for sixteen hours at 4° C., followed by three washes with PBS and incubation with fluorophore-conjugated secondary antibodies diluted 1:200 in the same buffer as primary antibodies for thirty minutes at 25° C. Following two washes with PBS, we stained the cells with TO-PRO-3 or phalloidin-TRITC, diluted in PBS according to manufacturer's instructions, for ten minutes at 25° C., washed them once with PBS, and mounted the samples using ProLong Antifade kit (Molecular Probes). We acquired the images using a Nikon spinning disk confocal microscope and analyzed them using Metamorph software (Universal Imaging).
Propidium Iodide DNA Content Analysis
After the appropriate treatment, we washed Jurkat cells once, resuspended them in PBS, and fixed the cells by adding four volumes of ice cold 100% ethanol. Cells remained on ice for one hour, after which we discarded the fixing solution, washed the cells once in PBS, resuspended them in PBS supplemented with 50 μg/ml PI and 5 μg/ml RNAse A (Sigma), and incubated samples in the dark for fifteen minutes at 37° C. followed by analysis in FACSCalibur. We analyzed the data using ModFit software (Verity Software House).
Immunoblotting
We lysed cells in 20 mM HEPES, pH 7.5, 150 mM NaCl, 1% Triton X-100, 10 mM tetrasodium pyrophosphate, 100 mM NaF, 17.5 mM β-glycerophosphate buffer supplemented with Complete Mini Protease Inhibitor tablet (Roche). We determined protein concentrations using Bio-Rad Protein Assay reagent and subjected equal amounts of protein to western blotting using antibodies described in the Figure captions. In case of ischemic brain samples, we dissected out injured regions of the cortexes, lysed them in RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 5 mM EDTA, 0.1% SDS, 0.5% sodium deoxycholate, 1% NP-40, supplemented with Complete Mini protease inhibitors) and subjected equal amounts of proteins to western blotting. Results of the western blotting were quantified using Scion Image software (Scion Corporation).
Electroporation of Jurkat Cells
pcDNA3-RIP-(1-580)-Fpk3-Myc, pcDNA3-RIP-(1-287)-Fpk3-Myc (pFR-KD) and pcDNA3-RIP-(1-580)-K45M-Fpk3-Myc, encoding RIP protein lacking DD domain, kinase domain of RIP and kinase dead mutant RIP, respectively, fused to three copies of FKBP12 protein, and a control vector, pcDNA3-Fpk3-Myc (pFpk), were a generous gift of G. Nunez (University of Michigan). We amplified full length RIP using corresponding cDNA and cloned it into pcDNA3-RIP-(1-580)-Fpk3-Myc, replacing truncated RIP, to generate full length RIP-encoding dimerization construct (pFR). We used this construct to generate kinase dead mutant (pFR-K45M) with the help of QuikChange mutagenesis kit (Stratagene).
To generate pFF construct encoding FADD dimerization cassette, consisting of myristoylation signal followed by two copies of the 36v mutant FKBP12 (Fv2E) and coding region of FADD, we PCR-amplified Fv2E and FADD using pC4M-Fv2E plasmid (Ariad Pharmaceuticals) and FADD cDNA, respectively, and cloned these fragments into pcDNA6 vector (Invitrogen).
For electroporation, we resuspended 20×106 FADD-deficient Jurkat cells in 1 ml hypoosmolar buffer (Eppendorf), supplemented with 1.25% DMSO, mixed cells with 18 μg of the RIP vector/and 2 μg of empty pEGFP vector and performed electroporation using Gene Pulser II (Bio-Rad). We allowed cells to rest for five to ten minutes and then transferred them into 4 ml of RPMI1640 media, supplemented with 1.25% DMSO, 1% glutamine, 1% antibiotic-antimycotic mixture (Invitrogen) and 10% heat-inactivated fetal calf serum. Three hours later, we separated live cells using Ficoll-Paque (Pharmacia), washed them once and resuspended them in the media containing dimerizing agent AP1510 (Ariad Pharmaceuticals) and other chemicals as described. After treatment for the indicated period of time, we added 2 μg/ml of PI to each sample, and determined percentages of viable PI-negative GFP-expressing cells. Alternatively, we selected a stable clone of Jurkat cells expressing dimerizable FADD (JK-FF) in blasticidin (Invitrogen).
Generation of Viral RNAi Vectors
We directly ligated oligonucleotides containing RNAi sequences into pSRP vector, which is based on pMSCV-puro (Invitrogen) viral vector and contains an H1 promoter. We used the published sequence of murine beclin-1 (see, e.g., Yu et al., Science 304:1500-2502, 2004). We generated the virus by co-transfection of the pSRP-based vector with the plasmids encoding retroviral Gag/Pol and VSV-G proteins into human HEK 293T cells. We infected Balbc 3T3 cells three times with each virus, followed by selection with puromycin. We used stable populations of cells to analyze target protein expression and cell viability.
EXAMPLESThe following examples are provided to illustrate the invention. These examples should not be construed as limiting.
Example 1 Characterization of Small Molecule Inhibitors of CICD/NecroptosisUsing a known paradigm of death receptor mediated caspase-independent cell death in human U937 cells, we established a high-throughput screen in 384 well format for small molecule inhibitors of caspase-independent cell death (CICD). In this system, U937 cells were induced to undergo CICD in the presence of TNFα and zVAD.fmk, and the rate of cell death was determined by an ATP-Lite-M assay, a commercial luminescence-based assay measuring cellular ATP levels (Packard). U937 cells were chosen because these cells can be induced to undergo CICD very efficiently upon TNFα/zVAD treatment in the absence of additional, stress-inducing sensitizing stimuli, such as CHX, making this system perfectly suited for reliable identification of CICD inhibitors. Furthermore, rapid suspension growth kinetics of U937 cells results in the availability of large quantities of cells, which translates into robust signals ideal for high throughput screening. ATP-Lite-M assay was chosen because among all the different assay systems tested, it gives the most consistent and robust signal, which is also critical for high throughput screening. Exposure of U937 cells to TNFα alone led to partial cell death, whereas co-treatment with TNFα and caspase inhibitor zVAD.fmk produced significant increase in the amount of cell death and ATP loss consistent with the published observations. In addition, in the presence of zVAD.fmk, the morphology of cell loss changed from apoptosis with cell shrinkage, nuclear fragmentation, membrane blebbing to necrosis, characterized by cell swelling, increase in cytosolic density, and early loss of plasma membrane integrity. Other cell death assays, such as an MTT assay (mitochondrial metabolism) and Sytox assay (permeability of the plasma membrane), were used as alternative means to validate the screen, and consistently produced results similar to those obtained using ATP-Lite-M assay, which confirmed that the ATP-Lite-M assay can be used to accurately measure the extent of CICD. Another commercial ATP assay, Cell-Titer-Glo (Promega), was also used in some subsequent analyses due to its superior sensitivity compared to ATP-Lite-M assay and produced comparable results.
A diverse chemical collection of approximately 15,000 small molecules obtained from both commercial sources as well as from combinatorial chemistry syntheses was screened using the U937 cell death assay, and 3 compounds (necrostatins) with highest activity were selected for further analyses (
The EC50's of these Nec compounds in inhibiting CICD vary, but are generally in the sub-/low micromolar range (Table 5). In this table, EC50 values represent the concentration required to rescue 50% of cell death in FADD deficient Jurkat cells treated with TNFα for 36 hours, which induces CICD as determined by ATP assays, with the following exceptions: values for Nec-2 were obtained using Jurkat cells expressing dimerizable FADD treated with dimerizer/zVAD for 36 hours and assayed for ATP levels. LD50 values were calculated based on treatment of corresponding Jurkat cells with the compounds in the absence of TNFα or dimerizer. None of these compounds caused an increase in ATP levels in control healthy cells.
The first isolated necrostatin, Nec-1, which showed the highest necrostatic activity, was further characterized in a number of cellular assays. In order to test the selectivity of Nec-1, its inability to block apoptosis was verified. Fas ligand-induced apoptosis of Jurkat cells was protected by pan caspase inhibitor zVAD.fmk, but not by Nec-1 (
In addition to the selective inhibition of necroptotic, but not apoptotic, death, the strict selectivity of effects of Nec-1 was also confirmed by showing a lack of compound effect on multiple aspects of cellular physiology. We found that Nec-1 had no general effect in healthy cells on the ATP levels, mitochondrial membrane potential, plasma membrane integrity, cell shape or size, cell cycle distribution, proliferation, global mRNA expression, the intracellular levels of reactive oxygen species, cell adhesion, actin and microtubule cytoskeleton or the morphology of various cellular compartments, e.g., nuclei, Golgi apparatus, ER and mitochondria.
Nec-1 demonstrated consistent activity against CICD in a variety of cellular systems including CICD of human monocytic U937 and mouse fibroblast Balbc 3T3 induced by TNFαc/zVAD.fmk, CICD induced by dimerized exogenous FADD and/or RIP in Jurkat cells in the presence of zVAD.fmk, CICD induced by FasL/CHX/zVAD.fmk, TNFα-induced CICD in FADD deficient mutant clone of Jurkat cells, and CICD induced by TNFα in mouse fibrosarcoma L929 cells. Inhibition of caspases in these systems has been previously reported to turn apoptosis into necrotic death; the exceptions were L929 and FADD deficient cells, where induction of necrotic death was previously demonstrated to be a primary cell death response in the absence of caspase inhibitors and, consistently, we observed inhibition of death by Nec-1 in the absence of zVAD.fmk. The ability of Nec-1 to inhibit CICD in all of those systems indicates that its effect is not limited to the U937 cells treated with TNFα/z-VAD.fmk, the assay used for the original screen, and that a similar necroptotic pathway is triggered in multiple cell types in response to various DR-related death-inducing stimuli. Furthermore, these data show that CICD is not just a by-product of failed apoptosis, but at least in some cases it is a primary death mechanism activated in the absence of apoptosis.
A number of compounds, including antioxidants PDTC and BHA, and hsp90 inhibitor geldanamycin, have been reported to have anti-CICD activities. In addition, we found that cathepsin B inhibitor Ca-074-Me and p38 inhibitors have anti-CICD activities in certain selected cell lines. We compared the activities of these compounds with Nec-1. Interestingly, we found that Nec-1 is the only compound that has anti-CICD activities in all cell based assays. For instance, p38 inhibitor PD169316 inhibits CICD in 3T3 cells and cathepsin B inhibitor Ca-074-Me inhibits CICD in Jurkat and 3T3 cells, but neither these compounds nor geldanamycin work in L929 cells (
Consistent with this notion, we have determined that necroptotic cell death in Jurkat and Balbc 3T3 cells cannot be blocked by small molecule inhibition of such factors as the mitochondrial permeability transition pore (MPTP), calpains, calcium homeostasis perturbation, HtrA2/Omi, phospholipase A2 and nitric oxide synthase, or the RNAi-mediated downregulation of Apoptosis Inducing Factor (AIF). We also screened a Biomol/ICCB chemical library of 489 compounds with known biological activities and found that no compound could block CICD in all cell types, as Nec-1 does. These results underscore the uniqueness of necrostatins' activity in blocking necroptotic cell death.
Since it has been previously suggested that CICD may be inhibitable by anti-oxidants, we examined whether CICD of U937 cells induced by TNFα/z-VAD.fmk can be inhibited by anti-oxidants, and whether Nec-1 can inhibit cell death induced by oxidative stress. U937 cells were treated with TNFα/zVAD.fmk for 72 hours or oxidative stress inducing agent menadione for 24 hours. Nec-1 provided expected protection against TNFα/zVAD.fmk but not menadione induced cell death, whereas anti-oxidant agents N-acetyl-cysteine, superoxide dismutase, catalase, vitamin E provided protection against menadione but not that of TNFα/zVAD induced cell death (
PARP-1 is a nuclear protein that responds to DNA damage by catalyzing the conversion of the respiratory coenzyme nicotinamide adenine dinucleotide (NAD+) into protein-bound ADP-ribose polymers, with concomitant release of nicotinamide (D'Amours et al., 1999). In addition to its involvement in DNA damage, PARP-1 has been shown to contribute to the caspase-independent component of the neuronal cell death induced by glutamate excitotoxicity, ischemic injury and MPTP. Therefore, we examined the possibility that Nec-1 may act as a PARP inhibitor. However, since PARP inhibitors, 6(5H)-Phenanthridione or DPQ (3,4-Dihydro-5[4(1-piperindinyl)butoxy]-1(2H)-isoquinoline), failed to inhibit CICD of Jurkat cells (
In addition, Nec-1 and other necrostatins inhibit all manifestations of necroptotic death, including: changes in shape and size (forward/side scatter analyses), ATP loss (ATP assay), mitochondrial dysfunction (MTT assay and DiOC6 staining) and plasma membrane permeabilization (Sytox/PI assays). Furthermore, Nec-1 allowed proliferation of TNFα-treated FADD-deficient cells at a rate indistinguishable from untreated cells. Consistent with these results, morphological analyses using electron microscopy (EM), fluorescent and bright field microscopy demonstrated that Nec-1 inhibited all manifestations of necroptotic cell death.
Example 2 Medicinal Chemistry Study of NecrostatinsSystematic modifications of the original high-throughput screening hit, Nec-1 (methylthiohydantoin-tryptophane, MTH-Trp) (EC50=494 nM), were performed in order to improve its efficacy, reduce its toxicity and to increase its metabolic stability (
Neither the amide nitrogen of the hydantoin nor the alpha-carbon to the amide was tolerant of any substitution. Next, the enantiomers of 7-Cl—O-Nec-1 were prepared. The (R)-enantiomer (also referred to as the “A isomer”) (EC50=47 nM) was found to be about 4 times more potent than the (S)-enantiomer (also referred to as the “B isomer”) at inhibiting CICD. A complete summary of the structure-activity-relationship (SAR) of the Nec-1 series for inhibiting CICD is shown in
Studies were performed on the effect of Nec-1 derivatives in the mouse two-hour middle cerebral artery occlusion (MCAO)/reperfusion model of brain ischemia. A significant dose-dependent decrease in infarction volume and behavioral changes (associated with ischemic injury) were detected upon icy injection (
Injection of 7-Cl-Nec-1 up to six hours after the onset of brain ischemic injury still offered protection (
These results support the idea that necrostatins: 1) target an independent non-apoptotic pathway of cell death, 2) can provide additional protection over apoptosis inhibitors, and 3) display extended window of opportunity, due to the delayed induction of CICD, making this class of compounds very promising candidates for the treatment of ischemic brain injury. The delayed nature of CICD, detected in our in vivo studies, actually makes CICD potentially a more “druggable” target for anti-stroke treatment than other forms of ischemic cell death with a more rapid onset.
Example 4 Accumulation of LC3II in CICD and in Ischemic Brain InjuryWe determined whether autophagy, a protein degradation/catabolic mechanism, is activated during necroptotic cell death, as suggested by a previous report implicating the role of autophagy in zVAD.fmk-induced CICD of L929 cells. We used the accumulation of the phosphatidylethanolamine-conjugated fragment of microtubule-associated protein 1 light chain 3 II (LC3II) as a marker, as it has been shown to be an early and critical step in the formation of autophagy vacuoles. Indeed, the LC3II accumulation was detected in necroptotic Balbc 3T3 cells treated with TNFα/zVAD or FasL/zVAD (
To confirm the specificity of Nec-1's activity in vivo, we performed SAR analysis for protection against ischemic brain injury in vivo. First, we tested Nec-1i, an inactive derivative of Nec-1 that lacks the methyl group in the hydantoin moiety (
In a number of instances, caspases, and especially caspase-8, has been reported to play either a pro-survival function in the primary immune cells or positively contribute to their activation and differentiation in response to the appropriate antigenic stimulus. In some cases, activation of the nonapoptotic cell death mechanisms has been directly suggested, such as activation-induced cell death (AICD) of T cells and lipopolysaccharide/zVAD.fmk-induced killing of monocytic/macrophage cells. We verified that in these instances cells are undergoing Nec-1-dependent CICD.
The activation of mouse macrophages or macrophage cell lines (RAW264.7) by LPS has been shown to sensitize them to caspase inhibition-induced (zVAD.fmk) death. Treatment with Nec-1 efficiently inhibited LPS-mediated sensitization of RAW264.7 cells to dose-dependent toxicity of zVAD.fmk (
Oxygen-glucose deprivation (OGD) of cultured primary cortical neurons, which mimics some aspects of in vivo ischemic brain injury during stroke, has been shown to induce necrosis, which was not protected by zVAD.fmk. Nec-1 attenuated OGD-induced death of cortical neurons (
As described above, nonapoptotic cell death has been prominently implicated in various types of neuronal cell death in addition to ischemic injury. For example, developmental studies suggested activation of the intrinsic necrotic-like program in the motor neurons in caspase-deficient mice, reminiscent of the activation of CICD in our experiments upon caspase inhibition. In case of Parkinson's disease, although apoptosis has been proposed to be the primary mechanism activated by MPTP or its metabolite MPP+, agents causing Parkinson's-like symptoms in animal models, inhibition of caspases has been shown to result in necrosis-like death, indicative of CICD. To this end, we have observed inhibition of MPP+/zVAD-induced death by necrostatins in two different dopaminergic neuron cell lines in vitro (human SH-SY5Y and mouse SN-4741 cells) (
In addition, we observed attenuation of the aggregated amyloid-beta peptide (Aβ) toxicity in primary rat hippocampal neurons by Nec-1 (
Interestingly, similar to the OGD-induced death, neurotoxicity in other paradigms of neurodegeneration was attenuated by Nec-1 even in the absence of caspase inhibitors, potentially indicating that endogenous conditions within neuronal populations might be non-permissive for the execution of apoptosis, making CICD a primary mechanism of pathologic neuronal death.
Example 9 Nec-1 Activity in Immune Cell RegulationActivation-Induced Cell Death (AICD) of T cells, a process that limits the re-activation of T cells to prevent the development of an autoimmune response, is an example of caspase-independent cell death under normal physiological conditions. Re-activation of mouse CD4+ cells resulted in efficient induction of cell death (
A number of reports have suggested that primary activation and effector function development in primary mouse and human T and B lymphocytes, monocytes and natural killer cells is inhibited by the presence of zVAD.fmk or by the inactivation of caspase-8. Whereas in various sub-classes of human T cells are succeptable to this regulation, mouse CD8+ cytotoxic lymphocytes (CTL), but not helper CD4+ cells appear to depend on caspase activity for primary activation. We have verified whether dependence on caspase activity in this case reflects involvement of Nec-1-controlled signaling steps.
Activation of the primary CTLs by stimulation with αCD3 antibody, assessed through the increase in cell numbers, was suppressed by zVAD. This effect of caspase inhibition was completely suppressed by Nec-1, which allowed accumulation of CTLs in the presence of zVAD.fmk (
The suppression of CTL activation by zVAD.fmk was not due to the induction of necroptotic cell death by combination of TCR signal and caspase inhibitor, as decrease in cell numbers was not associated with increase in cell death in zVAD.fmk-treated sample (
The effect of Nec-1 was specific and associated with the similar target as its CICD-suppressing activity as Nec-1i, the inactive derivative of Nec-1, failed to restore T cell proliferation (
Finally, consistent with the deficient B cell activation caused by human caspase-8 mutation, Nec-1 also attenuated suppression of B cell activation by zVAD.fmk (
Using a commercial antibody for RIP that can efficiently immunoprecipitate endogenous RIP protein (Santa Cruz) and a kinase assay for autophosphorylation of immunoprecipitated RIP1, we demonstrated that immunoprecipitated RIP1 as well as transfected RIP1, IPed using FLAG antibody, undergo autophosphorylation in vitro (
As a control for Nec-1 specificity, we compared the inhibition of overexpressed RIP and its closest homolog RIP2/RICK, which share >30% identity in the kinase domain, by Nec-1 using the same assay as described in
Interestingly, recent analyses of caspase-inhibition dependent suppression of B and T cell proliferation suggested that it is caused by the loss of NFkB activation. Therefore, our data suggesting restoration of B and T cell activation by Nec-1 under caspase-inhibited conditions directly implicate Nec-1 in paradigms of cellular regulation involving NFkB activation. These include, in addition to immune regulation, such pathologies as muscular dystrophy and others described herein, as well as innate immune responses mediated by RIP and diseases involving TNFα and IL-1β.
Example 11 Further Characterization of Necrostatin-1Necrotic cell death is common in a wide variety of pathological conditions, including stroke. Very little attempt, however, has been made to develop therapeutics to specifically target necrosis because of the conventional notion that, unlike apoptosis, necrotic cell death is a nonregulated response to overwhelming stress. The demonstration of a common necrotic cell-death pathway activated by a classical DR signal in the absence of any cellular damage directly challenges this notion and suggests that a portion of necrotic cell death in vivo might in fact be regulated by cellular machinery. This, in turn, may provide an unprecedented opportunity to selectively target pathological necrotic cell death.
In this and the next several examples, we used small molecules to define the nonapoptotic pathway mediated by death-domain receptors in the absence of caspase signaling. We identified necrostatin-1 (Nec-1), a specific and potent small-molecule inhibitor of cell death caused by DR stimulation in the presence of caspase inhibition in multiple cell types. These results provide the first direct evidence that DR signaling triggers a common alternative nonapoptotic cell-death pathway, which we term necroptosis. Using Nec-1, we demonstrated that necroptosis is a delayed component of ischemic neuronal injury and may therefore represent a promising therapeutic target for the treatment of stroke.
Because chemical inhibitors of caspases have been instrumental in the characterization of apoptosis in mammalian systems, we expected that specific necroptotic inhibitors would be equally useful for demonstrating the existence of a common, alternative cell-death pathway in multiple cell types, for providing specific tools to distinguish necroptosis from other cell-death processes, and as potential lead molecules targeting the nonapoptotic component of pathologic cell death for therapeutic benefit. We screened a chemical library of ˜15,000 compounds for chemical inhibitors of the necrotic death of human monocytic U937 cells induced by TNFα and zVAD.fmk, which we used as an operational definition of necroptosis. This screen resulted in the selection of Nec-1, which efficiently blocked necroptotic death in U937 cells in a concentration-dependent fashion (
Next, we used Nec-1 as a tool to examine whether the DR-induced nonapoptotic cell death observed in disparate cell types is mediated by a common mechanism. Nec-1 inhibited all published examples of necrotic cell death induced by DR activation in the presence of caspase inhibitors, including the necrotic death of (i) Jurkat cells induced by FasL, cycloheximide (CHX) and zVAD.fmk (FasL-CHX-zVAD.fmk,
Although Nec-1 was selected in a screen with zVAD.fmk, its action is not dependent upon pharmacological inhibition of caspases. Consistent with the direct activation of necroptosis, Nec-1 prevented the death of TNFα-treated FADD-deficient Jurkat cells, which are unable to activate caspases in response to DR signaling, even in the absence of zVAD.fmk (
To establish the specificity of Nec-1, we compared its effects on DR-induced apoptosis as compared to necroptosis, which can be readily distinguished by morphological criteria and selective dye staining. Nec-1 had no effect on FasL-CHX-induced accumulation of annexin V-positive and propidium iodide (PI)-negative cells, a result indicative of apoptosis (
Consistent with this observation, Nec-1 had no effect on apoptotic morphology (cytoplasm condensation, chromatin marginalization, nuclear fragmentation and plasma membrane blebbing) in FasL-CHX-treated apoptotic Jurkat cells (
To further establish the specificity of Nec-1, we analyzed its possible effect on other cell physiological parameters. We found that Nec-1 had no general effect in healthy cells on ATP levels, mitochondrial membrane potential, plasma membrane integrity, cell shape or size, cell cycle distribution, proliferation, global mRNA expression as reflected in Agilent mRNA chip analysis, the intracellular levels of reactive oxygen species (ROS), cell adhesion, actin and microtubule cytoskeletons, or the morphology of various cellular compartments, for example, nuclei, Golgi apparatus, endoplasmic reticulum and mitochondria (
Finally, we compared the activity of Nec-1 to that of other small-molecule regulators of cellular signaling. Our analyses revealed that necroptotic cell death in Jurkat and BALB/c 3T3 cells cannot be blocked by small-molecule inhibition of such factors as the mitochondrial permeability transition pore, calpains, calcium homeostasis perturbation, poly(ADP-ribose) polymerase (PARP), HtrA2/Omi, phospholipase A2 and nitric oxide synthase, or the RNAi-mediated downregulation of apoptosis-inducing factor. Furthermore, we screened a chemical library of 489 compounds with known biological activities (BIOMOL ICCB Known Bioactives library; http://iccb.med.harvard.edu) and found that no compound could block necroptosis in all cell types, as does Nec-1. These results underscore the unique nature of necroptosis regulation and Nec-1 activity.
Oxidative stress has been suggested as having a role in DR-induced caspase-independent cell death in some cell types, including U937 and L929. However, we found that only a small fraction of TNFα-treated necroptotic FADD-deficient Jurkat cells showed an increase in ROS (˜30% of dying cells; see
Autophagy, a large-scale protein degradation and catabolic mechanism, has been implicated in caspase-independent cell death, although its functional role remains a subject of debate. The EM analysis of necroptotic Jurkat cells demonstrated the presence of double membrane-enclosed vesicles filled with electron-dense material (
Previous analyses have suggested that the kinase activity of the DR-interacting protein RIP serves as a bifurcation point separating necroptosis from other DR-dependent pathways. Indeed, dimerized full-length RIP or its kinase domain alone is sufficient to induce kinase-dependent necroptotic cell death, which was inhibited by Nec-1 (
The stringent specificity of Nec-1 in inhibiting necroptosis prompted us to use it to explore the previously unknown role of necroptosis in vivo. Neuronal cell death caused by ischemic injury is known to contain a substantial nonapoptotic component, and the involvement of DRs in the ischemic brain injury has been suggested. Therefore, we hypothesized that ischemic brain injury may create conditions that are nonoptimal for apoptosis but suitable for necroptosis.
To examine the involvement of necroptosis in ischemic brain injury, we determined the effect of Nec-1 on ischemic damage resulting from middle cerebral artery occlusion (MCAO) in mice. Intracerebroventricular administration of Nec-1 significantly (P<0.05) reduced the infarct volume after MCAO, which suggested that necroptosis could be involved in this form of pathologic death (
We next examined the specificity of 7-Cl-Nec-1 activity in vivo. Consistent with the specificity of Nec-1 in blocking necroptosis but not apoptosis in vitro, treatment with 7-C1-Nec-1 did not block caspase-3 activation during ischemic brain injury, whereas zVAD.fmk did (
To confirm the mode of action of Nec-1 in vivo, we performed a structure-activity relationship analysis of its protection against ischemic brain injury. First, Nec-1i, an inactive derivative of Nec-1 that lacks a single methyl group (
Notably, the protective effect of 7-Cl-Nec-1 was readily detectable even when the compound was administered six hours after the onset of injury (
Nec-1 is commercially available from Sigma-Aldrich.
We prepared Nec-1i according to methods known in the art (see, e.g., Suzuki et al., Can. J. Biochem. 55:521-527, 1977). We prepared 7-Cl-Nec-1 according to Scheme 1:
We added dimethyl amine (2.05 mL, 16.3 mmol., 40% solution) to a mixture of acetic acid (13.6 mL) and formaldehyde (0.340 mL, 4.5 mmol, 37% solution) under argon. We stirred the reaction mixture for 10 minutes and then treated it with 7-chloroindole (I-1) (604 mg, 4.0 mmol). We stirred the resulting mixture at room temperature for ˜16 hours. We first neutralized the reaction mixture with K2CO3, then basified it with NaOH (2N), and then extracted it in ethyl acetate, washed with water, dried, and concentrated. We recrystallized obtained solid from ethyl acetate and hexane to give (I-2): yield 86%, mp 136° C.-138° C., 1H NMR (500 MHz, CDCl3): 2.27 (s, 6H), 3.61 (s, 2H), 7.04 (dd, J=8.0 and 8.0 Hz, 1H), 7.15 (d, J=2.5 Hz, 1H), 7.18 (d, J=7.5 Hz, 1H), 7.60 (d, J=7.5 Hz, 1H), 8.53 (s, 1H).
We refluxed a suspension of (I-2) (2.8 mmol), 2-formylamino-malonic acid diethyl ester (3.1 mmol), and NaOH (30 mg) in toluene (20 mL) under argon for three days. We concentrated the reaction mixture and purified it by column chromatography on silica gel using 40% ethyl acetate-hexane to give (I-3): yield 65%, mp 170° C.-174° C., 1H NMR (500 MHz, CDCl3): 1.28 (t, J=7.5 Hz, 6H), 3.87 (s, 2H), 4.17-4.31 (m, 4H), 6.80 (s, 1H), 7.00 (d, J=2.5 Hz, 1H), 7.02 (dd, J=7.5 and 8.0 Hz, 1H), 7.17 (d, J=7.5 Hz, 1H), 7.40 (d, J=8.0 Hz, 1H), 8.18 (d, J=1.0 Hz, 1H), 8.32 (s, 1H).
We treated a solution of (I-3) in THF with NaOH (300 mg in 10 mL water) at room temperature for 24 hours. We slowly acidified the mixture with acetic acid (5 mL) and then refluxed it for 24 hours. We concentrated the reaction mixture under vacuum, and treated it with diluted HCl (10 mL, 3M) and then again refluxed for ˜16 hours. We allowed the reaction to cool to room temperature and adjusted pH to 6.0 with 2M KOH. We filtered the white solid that formed, washed it with water, and dried it under vacuum to give (I-4): yield 83%, mp 236° C.-239° C., 1H NMR (500 MHz, DMSO-d6): 2.95-3.00 (dd, J=8.5 and 15 Hz, 1H), 3.24-3.28 (dd, J=4.0 and 15 Hz, 1H), 3.41-3.43 (dd, J=4.0 and 8.5 Hz, 1H), 6.95 (dd, J=7.5 and 7.5 Hz, 1H), 7.10 (d, J=7.5 Hz, 1H), 7.22 (s, 1H), 7.52 (d, J=7.5 Hz, 1H), 11.18 (s, 1H).
We dissolved thionyl chloride (0.09 mL, 1.2 mmol) in 3 mL of anhydrous methanol at 0° C. and then added this solution to a flask containing crude (I-4) (200 mg, 0.5 mmol). After stirring at −5° C. for four hours, we allowed the reaction mixture to warm to room temperature and stirred it overnight before being concentrated. We collected the white solid, washed it with ethyl acetate and dried it in vacuo. We directly used the product (I-5) without further purification.
We added triethyl amine (0.1 mL) to a solution of (I-5) (1.0 mmol) in dichloromethane (10 mL) followed by methylisothiocyanate (7.4 mg, 0.1 mmol). We stirred the reaction mixture at room temperature for one hour and then concentrated it. We purified the obtained residue by column chromatography on silica gel using 30% ethyl acetate in hexane to give (7-Cl-Nec-1): mp 249° C.-253° C.; 1H NMR (d6-DMSO-CDCl3, 500 MHz) δ 3.02 (s, 3H), 3.18-3.22 (dd, 1H, J1=14.5 Hz, J2=5.5 Hz); 3.30-3.34 (dd, 1H, J1=14.5 Hz, J2=5.5 Hz); 4.35 (dd, 1H, J1=5.5 Hz, J2=4.5 Hz); 7.00 (t, 1H, J=7.5 Hz); 7.13 (d, 1H, J=7.5 Hz); 7.19 (d, 1H, J=2.0 Hz); 7.52 (d, 1H, J=7.5 Hz); 9.92 (s, 1H), 10.45 (s, 1H); 13C NMR, (d6-DMSO, 100 MHz) δ 25.92, 26.61, 59.45, 108.84, 115.64, 117.56, 119.45, 120.46, 125.44, 129.19, 132.59, 174.43, 182.83; Analysis calculated for C13H12ClN3OS: C, 53.15; H, 4.12; N, 14.30. Found: C, 53.16; H, 4.21; N, 14.01.
The oxygen-containing derivative of (7-Cl-Nec-1), (7-Cl—O-Nec-1), was prepared according to Scheme 2:
We added phosphorus oxychloride (0.66 mL, 7 mmol) dropwise to anhydrous DMF (5 mL) at 0° C. under argon. Next, we added a solution of (I-1) (1 g, 6.6 mmol) in anhydrous DMF (15 mL) dropwise at room temperature and stirred the resulting mixture for two hours. We poured the reaction mixture into ice and saturated NaHCO3 and extracted it with ethyl acetate. We washed the combined organic solutions with saturated NaCl (10 mL×3), dried it over anhydrous MgSO4, filtered and concentrated it to give 990 mg of product, (I-6), as a yellow-orange solid (83%). 1H NMR (500 MHz, DMSO-d6) δ 12.22 (1H, br s), 9.93 (1H, s), 8.34 (1H, s), 8.07 (1H, d, J=9.0 Hz), 7.57 (1H, d, J=1.5), 7.25 (1H, dd, J=1.8, 7.8 Hz).
We heated a mixture of (I-6) (1 mmol) and 1-methylimidazol-2,5(1,3H)-dione (which we synthesized according to the method used by Janin et al., Eur. J. Org. Chem. 2002:1763-1769, 2002) (250 mg, 2.5 mmol) in piperidine (2 mL) at 110° C. for four hours under an argon atmosphere. Then, we allowed the reaction mixture to cool in a refrigerator (˜5° C.) with the addition of ether (2 mL). We filtered the precipitate and washed it with ether to give (I-7). 1H NMR (500 MHz, DMSO-d6): δ 12.15 (1H, br s), 10.26 (1H, br s), 8.23 (1H, s), 7.79 (1H, d, J=8.0 Hz), 7.27 (1H, d, J=8.0 Hz), 7.13 (1H, t, J=7.8 Hz), 6.82 (1H, s), 2.97 (3H, s).
We added CoCl2 (1.0 mmol) and NaBH4 (10 mmol) portion wise to a solution of (I-7) (0.5 mmol) in a mixed solvent of anhydrous MeOH/THF (1:1, 40 mL). We stirred the mixture at room temperature overnight and then diluted it with ethyl acetate (100 mL). We washed the mixture sequentially with saturated NaHCO3 (30 mL), 1N HCl (30 mL), saturated NaCl (30 mL) and then dried it over anhydrous MgSO4, filtered and concentrated it. We purified the crude product by column chromatography on silica gel to give (7-Cl—O-Nec-1): mp 173° C.-175° C.; 1H NMR (CDCl3, 500 MHz) δ 8.43 (1H, br s), 7.50 (1H, d, J=8.0 Hz), 7.22 (1H, d, J=7.5 Hz), 7.13 (1H, d, J=2.0 Hz), 7.06 (1H, t, J=7.8 Hz), 5.69 (1H, br s), 4.27 (1H, ddd, J=1.0, 3.5, 8.8 Hz), 3.43 (1H, dd, J=3.5, 14.5 Hz), 3.01 (1H, dd, J=9.3, 14.8 Hz), 2.95 (3H, s); 13C NMR, (CDCl3, 100 MHz) δ 173.4, 157.2, 133.6, 128.4, 123.6, 122.0, 120.8, 117.2, 116.9, 111.0, 58.0, 28.1, 24.5; Elemental analysis calculated for C13H21ClN3O2: C, 56.22; H, 4.36; N, 15.13. Found: C, 56.19; H, 4.41; N, 15.10.
Example 17 Necrosis in Cells in Response to zVAD-fmk and TNFαThe cell lines U-937 and BALB/c 3T3 were assayed for the occurrence of necrosis in response to the combined treatment of zVAD-fmk, a caspase inhibitor, and TNFα, a cell death stimulator. The cells (5×105 cells/ml) were exposed to zVAD-fmk (100 μM) and human TNFα (40 ng/ml) for 72 hours. Induction of necrosis was assayed by measuring the cellular ATP levels in response to TNFα (Crouch et al., supra, Storer et al., supra, and Cree et al., supra). Cells which underwent necrosis exhibited decreased cellular ATP levels relative to controls cells which received no treatment, zVAD-fmk (100 μM) alone, or human TNFα (40 ng/ml) alone. It was found that the cells underwent necrosis in response to treatment with zVAD-fmk and TNFα. The cells were also observed morphologically for the occurrence of apoptosis or necrosis, for example, by analyzing the cells for membrane blebbing and nuclear condensation.
Example 18 Identification of Small Molecules that Decrease NecrosisThe U-937 cell line was used to screen a library of 16,000 small molecule chemical compounds for a compound's ability to decrease necrosis induced by exposure of the cell to zVAD-fmk and TNFα. The library of chemical compounds used in this screen was obtained from ChemBridge (ChemBridge Corporation, San Diego Calif.).
In a primary screen, U-937 cells (5×105 or 7.5×105 cells/ml) were first exposed to zVAD-fmk (100 μM). Thirty minutes later the same cells were exposed to a chemical compound from the library (5 mg/ml, dissolved in 0.1-0.5 μl of DMSO, giving a final DMSO concentration of 0.3% to 1.5%). After an additional thirty minutes, TNFα (40 ng/ml) was added to the cell culture medium. The cells were then incubated at 37 C for 72 hours, and were then assayed for cellular ATP levels. Compounds which did not prevent a decrease in cellular ATP levels were compounds which did not prevent necrosis in response to treatment of the cell with zVAD-fmk and TNFα. Compounds which maintained cellular ATP levels were compounds which blocked necrosis triggered by zVAD-fmk and TNFα.
As a result of the primary screen, 50 chemical compounds from the library were identified to decrease necrosis induced by zVAD-fmk and TNFα. These compounds were selected for a second round of screening for compounds that decrease necrosis induced by zVAD-fmk and TNFα.
In a secondary screen, the compounds identified from the first screen, above, to decrease necrosis induced by zVAD-fmk and TNFα were assayed for their potency. Serial dilution of each chemical compound was performed and the compounds were administered to U-937 cells, as per the primary screen. The concentrations of each compound were 70 μM, 23 μM, 8 μM, and 2.5 μM. The level of necrosis occurring in response to zVAD-fmk, TNFα, and the various concentrations of chemical compounds was assayed as described above for the primary screen.
As a result of the secondary screen, four chemical compounds from the ChemBridge library, ChemBrige Compound Nos. 115807, 115681, 210227, and 215686, were identified to decrease necrosis in response to exposure of the cell to zVAD-fmk and TNFα. The structures of these compounds are as follows:
Exposure of low density U-937 cells (1×105 cells/ml) to zVAD-fmk (100 μM) and DMSO (0.5%) for 72 hours results in cell death by necrosis. The compounds identified to decrease cell necrosis triggered by zVAD-fmk and TNFα, compounds 115807, 115681, 210227, and 215686 from the ChemBridge chemical library, were also evaluated for their ability to decrease cell necrosis induced by zVAD-fmk and DMSO. The cells (1×105 cells/ml) were first exposed to zVAD-fmk, and then thirty minutes later to the above-identified small molecules that decrease necrosis. After an additional 30 minutes, the cells were exposed to DMSO. 72 hours after exposure to the compounds, cellular ATP levels were measured, as described above. All four chemical compounds that decreased necrosis induced by zVAD-fmk/TNFα also decreased necrosis induced by zVAD-fmk/DMSO.
Example 20 Preparation of Compounds of Formula (XXII)One compound identified as an inhibitor of necrosis was ChemBridge compound number 210227 (Nec-3). Analogs of this compound have been previously described (El-Rayyes and Al-Jawhery, J. Heterocyclic Chem. 23:135-140, 1986; Sinha and Rastogi, Indian J. Chem 308:684-692, 1991; Szollosy et al., J. Chem. Soc., Perkin Trans. 2 1991:489-493) and the reported biological activities for this structure class include weak antiamoebic activity.
In the present invention, novel analogs of ChemBridge compound no. 210227 have been prepared and are represented by formula (XXII). In one example, the starting point for the synthesis of a compound of formula (XXII) begins with a tetralone of formula (XXIII), which can either be obtained from commercial sources or can be prepared by methods known to those skilled in the art (see, for example Zubaidha et al., Tetrahedron 47:5759, 1991; Kumar, Organic Preparations and Procedures International 29:477-79, 1997; and Cui et al., Tetrahedron Lett. 44:4007-4010, 2003).
Compounds of formula (XXIII) can be converted to 2-arylidene- or 2-heteroarylidine-1-tetralones (XXIV) by their condensation with aromatic or heteroaromatic aldehydes R5—CHO, respectively, in an alcoholic solvent in the presence of a catalytic amount of base (such as, for example, sodium hydroxide, potassium hydroxide, or piperidine) or acid (such as, for example, H2SO4, H3PO4, or HCl) to produce a compound of formula (XXIV)
where Z is CH2 and R7 is H
Compounds of formula (XXIV) can then be reacted with hydrazine and a carboxylic acid, such as, for example, R9CO2H, where R9 is an optionally substituted C1-12 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15heteroaralkyl, to produce compounds of formula (XXII):
where Z is CH2, R7 is H, R6 is —C(O)R9, where R9 is as previously defined herein, the bond indicated by (a) is a double bond, and R1, R2, R3, R4, and R5 are as defined previously herein. In this reaction, a mixture of cis and trans isomers is usually formed, which can be subsequently separated by chromatographic techniques known in the art.
Alternatively, compounds of formula (XXIV) can be reacted with hydrazine alone, or with hydrazine and a sterically hindered carboxylic acid, such as, for example, trimethylacetic acid, to produce compounds of formula (XXII) where R6 is H. When the reaction with hydrazine is performed in the absence of the carboxylic acid, the trans isomer is predominantly formed (i.e., the hydrogens at C3 and C3a are trans). In the presence of a carboxylic acid, a mixture of cis and trans isomers is usually formed, which can be subsequently separated by chromatographic techniques. The nitrogen atom that bears R6 can then be acylated with an activated carboxylic acid or thiocarboxylic acid, such as, for example, an acyl chloride, to form compounds of formula (XXII) in which R6 is —C(O)R9 or —C(S)R9; reacted with a chloroformate to produce compounds of formula (XXII) in which R6 is —C(O)OR9; reacted with phosgene or thiophosgene, followed by reaction with an amine to produce compounds of formula (XXII) in which R6 is —C(O)NR9R10 or —C(S)NR9R10, respectively; or reacted with a sulfonyl chloride to produce compounds of formula (XXII) in which R6 is —S(O2)R9, where R9 and R10 are as previously defined herein.
To produce compounds of formula (XXII) in which Z is a bond, an ethylene moiety, an oxygen atom, a sulfur atom, or includes a nitrogen atom; aromatic or heteroaromatic aldehydes R5—CHO can be reacted with 1-indanones of formula (XXV), 1-benzosuberones of formula (XXVI), 4-chromanones of formula (XXVII), 1-thio-4-chromanones of formula (XXVIII), or quinolinones of formula (XXIX), respectively, in an alcoholic solvent using a catalytic amount of base or acid in a manner similar to that previously described herein for the conversion of compounds of formula (XXIII) to compounds of formula (XXIV). The resulting α,β-unsubstituted ketone of formula (XXIV) can then be reacted with hydrazine, followed by reaction with reagents that form R6 substituents, as previously described herein.
To produce compounds of formula (XXII) in which Z is S(O) or S(O2), compounds of formula (XXVIII) can be treated with an oxidizing agent, such as, for example dimethyldioxirane, and the resulting sulfoxide or sulfone carried forward by treatment with R5—CHO, and then hydrazine and R6—CO2H, as previously described.
Compounds of formula (XXII) where the bond indicated by (a) is a single bond can be obtained by reducing the corresponding compounds of formula (XXII), where the bond indicated by (a) is a double bond, in a catalytic hydrogenation procedure.
Should it be necessary in any of the synthetic steps used to produce compounds of formula (XXII) to protect a reactive functionality from unwanted reaction, any of the substituents R1, R2, R3, R4, R5, or R6 can be protected as described in Greene, “Protective Groups In Organic Synthesis, 3rd Edition” (John Wiley & Sons, New York, 1999), which is incorporated herein by reference.
Examples of compounds of formula (XXII) are presented in Table 6,
where the bond indicated by (a) is a double bond; each of R4 and R7 is H; R5 is
R6 is —C(O)R9; and each of Z, R2, R3, R5a, R5b, R5c, R5d, and R9 is as indicated in the table.
Other examples of compounds of formula (XXII) can be selected from the group of compounds consisting of:
where the relative stereochemistries of the hydrogens at C3 and C3a are as shown and the absolute configuration at these chiral centers allows for both enantiomers.
Example 21 Inhibition of Necrosis by Compounds of Formula (XXII)Compounds of formula (XXII) were assayed for anti-necrotic activity by the procedure described for the secondary screen in Example 18, with lower concentrations of the test compounds used in the assay and with human Jurkat T cells used instead of U-937 cells. Initially, compound libraries were screened for inhibition of cell death induced by TNFα in the presence of zVAD in human B cell line U-937. One compound identified as an inhibitor of necrosis was (140). The initial test sample was a mixture of diasteromers. Several derivatives of (140) have been reported in the literature (El-Rayyes, N. R.; Al-Jawhery, A. J. Heterocyclic Chem. 1986, 23, 135-140; Sinha, A. K.; Rastogi, S. N. Indian J. Chem. 1991, 30B, 684-692; Szöllösy, Á; Tóth, G.; Lóránd, T.; Kónya, T.; Aradi, F.; Lévai, A. J. Chem. Soc. Perkin Trans. 2 1991, 489-493). The reported biological activities, in the scientific literature, for this structure class include weak anti-amoebic activity.
The trans isomer (5) and cis isomer (4) were prepared as outlined in Scheme 3. Initially, 6-methoxytetralone (I-8) was allowed to react with p-fluorobenzaldehyde (I-9) in the presence of base (sodium hydroxide) to give the chalcone (I-10). This material was then treated with hydrazine hydrate in the presence of excess acetic acid to produce the diasteromers (5) and (4). These compounds were readily separated. An alternative synthesis was also used as illustrated in Scheme 4. Treating tetralone (I-8) with 4-methoxybenzaldehyde (I-11) produced chalcone (I-12). Next, the chalcone was allowed to react with hydrazine hydrate in the presence of excess trimethyl acetic acid to produce the diasteromers (I-13) and (I-14), which were separated. In the absence of an organic acid, such as trimethyl acetic acid, only the trans isomer (I-13) was formed. Each diasteromer was then allowed to react with acetic anhydride and a catalytic amount of DMAP (4-dimethylaminopyridine) to yield (20) and (19), respectively.
Compounds were also tested in another necrosis assay utilizing human Jurkat T cells, Fas ligand to induce cell death, and zVAD to inhibit the apoptosis pathway. After 36 hours, cell viability was measure by the commercial CellTiter ATP cell viability assay (Promega). In the case of (4)/(5) and (19)/(20), only the cis isomers (4) (
As noted above, a structure-activity-relationship (SAR) study was conducted in order to increase anti-necrosis activity. The compounds prepared and assayed include compounds (1)-(217) (e.g., those compounds listed in Table 6 and those that follow). These compounds were prepared utilizing analogous protocols that were employed for preparing (4), (5), (19), and (20). Compounds (135), (136), and (137) were prepared as shown in Scheme 5.
To further verify that (19) can protect neuronal cells from necrosis, it was tested using two different neurotoxins in the human neuroblastoma cell line SH-SY5Y in the presence of zVAD. Cell death was induced by β-amyloid, a cellular model of Alzheimer's disease, and methylpyridinium ion (MPP+), a cellular model of Parkinson's disease. In both cases, the compound was effective in reducing toxicity as measured by cellular ATP levels (
The compounds described herein are inhibitors of cellular necrosis that are effective at maintaining cell viability when the cells are challenged with toxins (e.g., Fas ligand, MPP+ or β-amyloid) and the apoptosis pathway has been interrupted by the addition of zVAD. This protection was found in different cell types, such as human neuronal cells and human T-cells. Compounds described herein may be useful as therapeutic agents (alone or in combination with other compounds) for the treatment of humans afflicted with an acute or chronic neurological disease. In addition, compounds of this invention may be useful for assay development of novel molecular targets integral to induced necrotic cell death.
Preparation and Characterization of Compounds
General Procedure for the synthesis of 2-arylidene-1-tetralones and 2-(arylidene)-choman-4-ones, exemplified for 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone: To a solution of 7-methoxy-1-tetralone (1.760 g, 0.01 mol) and 4-fluorobenzaldehyde (1.240 g, 0.01 mol) in ethanol (20 mL) was added slowly a solution of NaOH (0.012 mol, 8 N) at room temperature. The mixture was stirred for two hours. The solid precipitated was collected by filtration, and then washed sequentially with ethanol, water, and again with ethanol. The solid was dried in vacuo to give 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone (2.485 g, 88%): mp 129-30° C., 1H NMR (500 MHz, CDCl3): 2.88-2.91 (m, 2H), 3.06-3.10 (m, 2H), 3.87 (s, 3H), 7.06-7.13 (m, 3H), 7.17 (d, J=8.4 Hz, 1H), 7.42 (d, J=5.2 Hz, 1H), 7.44 (d, J=5.6 Hz, 1H), 7.61 (d, J=3.2 Hz, 1H), 7.81 (s, 1H). HFABMS m/z 283.1134 (calc for C18H16FO2, MH+, 283.1134).
General procedure for the preparation of 3,3a-trans and 3,3a-cis N-acetyl-1-[3-(aryl)-3,3a,4,5-tetrahydro-benzo[g]indazoles] and N-acetyl-1-(3-aryl-3a,4-dihydro-3H-chromeno[4,3-c]pyrazoles), exemplified for (4) and (5): A solution of 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone (0.300 g, 0.001 mol), hydrazine hydrate (0.3 mL) in acetic acid (3 mL) was refluxed at 120° C. for 15 h. The reaction mixture was concentrated and then dissolved in ethyl acetate. The organic layer was washed sequentially with water, saturated aqueous NaHCO3, water and brine, dried on anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified by silica gel column using ethyl acetate-hexane (3:7) to give (5) (0.051 g, 21%), and (4) (0.109 g, 45%). Yields are based on the recovery of starting material (95 mg).
(5): mp 165-67° C., 1H NMR (400 MHz, CDCl3): 1.94-1.99 (m, 1H), 2.29-2.31 (m, 1H), 2.32 (s, 3H), 2.40-2.42 (m, 2H), 3.16-3.22 (m, 1H), 3.89 (s, 3H), 4.95 (d, J=9.6 Hz, 1H), 6.93-6.96 (dd, J=2.8 and 8.4 Hz, 1H), 7.04-7.08 (t, J=8.8 Hz, 2H), 7.12 (d, J=8.4 Hz, 1H), 7.28-7.32 (m, 2H), 7.46 (d, J=2.4 Hz, 1H). Anal. Calcd for C20H19FN2O2: C, 70.99; H, 5.66; N, 8.28. Found: C, 70.75; H, 5.63; N, 8.17.
(4): mp 182-85° C., 1H NMR (400 MHz, CDCl3): 1.02-1.06 (m, 1H), 1.75-1.78 (m, 1H), 2.48 (s, 3H), 2.81-2.87 (m, 2H), 3.54-3.57 (m, 1H), 3.90 (s, 3H), 5.72 (d, J=12.0 Hz, 1H), 6.93-7.11 (m, 6H), 7.56 (d, J=4.0 Hz, 1H). 13C NMR (400 MHz, CDCl3): 22.13, 24.50, 28.30, 48.77, 55.73, 62.61, 107.83, 112.70, 115.62, 118.72, 127.99, 128.21, 130.26, 132.25, 132.92, 155.79, 158.35, 161.13, 163.58, 168.72. Anal. Calcd for C20H19FN2O2: C, 70.99; H, 5.66; N, 8.28. Found: C, 70.72; H, 5.69; N, 8.15.
(14): yield 18%, mp 228-30° C., 1H NMR (400 MHz, CDCl3): 1.89-2.00 (m, 1H), 2.24-2.30 (m, 1H), 2.38 (s, 3H), 2.88-2.94 (m, 2H), 3.12-3.19 (m, 1H), 3.83 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.68 (d, J=2.4 Hz, 1H), 6.83-6.85 (dd, J=2.4 and 8.4 Hz, 1H), 7.00-7.06 (m, 2H), 7.26-7.29 (m, 2H), 7.90 (d, J=8.8 Hz, 1H). Anal. Calcd for C20H19FN2O2: C, 70.99; H, 5.66; N, 8.28. Found: C, 70.76; H, 5.66; N, 8.24.
(13): yield 20%, 1H NMR (400 MHz, CDCl3): 1.00-1.07 (m, 1H), 1.74-1.76 (m, 1H), 2.42 (s, 3H), 2.76-2.89 (m, 2H), 3.49-3.56 (m, 1H), 3.81 (s, 3H), 5.67 (d, J=10.8 Hz, 1H), 6.65 (s, 1H), 6.83-6.85 (dd, J=6.0 and 2.4 Hz, 1H), 6.94-7.06 (m, 4H), 7.99 (d, J=9.2 Hz, 1H). Anal. Calcd for C20H19FN2O2: C, 70.99; H, 5.66; N, 8.28. Found: C, 70.92; H, 5.66; N, 8.28.
(16): yield 28%, mp 231-33° C., 1H NMR (400 MHz, CDCl3): 1.92-1.97 (m, 1H), 2.24-2.27 (m, 1H), 2.40 (s, 3H), 2.86-2.90 (m, 2H), 3.11-3.18 (m, 1H), 3.89 (s, 3H), 3.96 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.63 (s, 1H), 7.01-7.06 (dd, J=2.4 and 8.8 Hz, 2H), 7.26-7.29 (m, 2H), 7.38 (s, 1H). HRFABMS m/z 369.5 (calc for C21H22FN2O3, MH+, 369.4095).
(15): yield 33%, mp 189-93° C., 1H NMR (400 MHz, CDCl3): 1.01-1.08 (m, 1H), 1.72-1.77 (m, 1H), 1.44 (s, 3H), 2.72-2.93 (m, 2H), 3.48-3.55 (m, 1H), 3.88 (s, 3H), 3.95 (s, 3H), 5.67 (d, J=10.8 Hz, 1H), 6.60 (s, 1H), 6.94-6.99 (dd, J=9.2 and 8.8 Hz, 2H), 7.04-7.07 (m, 2H), 7.47 (s, 1H). Anal. Calcd for C21H21FN2O3: C, 68.46; H, 5.75; N, 7.60. Found: C, 68.54; H, 5.61; N, 7.74.
(1): yield 15%, mp 168-71° C., 1H NMR (400 MHz, CDCl3): 2.00-2.04 (m, 1H), 2.31-2.35 (m, 1H), 2.42 (s, 3H), 2.96-2.99 (m, 2H), 3.19-3.25 (m, 1H), 4.97 (d, J=12.0 Hz, 1H), 7.07 (t, J=8.0 Hz, 2H), 7.22 (d, J=8.0 Hz, 1H), 7.28-7.35 (m, 4H), 7.99 (d, J=8.0 Hz, 1H). Anal. Calcd for C19H17FN2O: C, 74.01; H, 5.56; N, 9.08. Found: C, 73.88; H, 5.48; N, 9.12.
(2): yield 23%, mp 166-68° C., 1H NMR (400 MHz, CDCl3): 1.06-1.11 (m, 1H), 1.77-1.81 (m, 1H), 2.47 (s, 3H), 2.87-2.95 (m, 2H), 3.56-3.63 (m, 1H), 5.72 (d, J=12.0 Hz, 1H), 7.00 (t, J=8.0 Hz, 2H), 7.06-7.10 (m, 2H), 7.19 (d, J=8.0 Hz, 1H), 7.28-7.36 (m, 2H), 8.09 (d, J=8.0 Hz, 1H). Anal. Calcd for C19H11FN2O: C, 74.01; H, 5.56; N, 9.08. Found: C, 73.79; H, 5.52; N, 9.11.
(3): yield 30%, mp 196-99° C., 1H NMR (400 MHz, CDCl3): 1.92-1.99 (m, 1H), 2.27-2.32 (m, 1H), 2.42 (s, 3H), 2.86-2.89 (m, 2H), 3.14-3.20 (m, 1H), 3.87 (s, 3H), 4.93 (d, J=7.2 Hz, 1H), 6.91-7.01 (m, 3H), 7.08-7.10 (m, 2H), 7.29-7.34 (m, 1H), 7.43 (d, J=2.0 Hz, 1H). HFABMS m/z 339.1419 (calc for C20H19FN2O2, MH+, 339.1509).
(72): yield 39%, mp 176-77° C., 1H NMR (400 MHz, CDCl3): 1.00-1.08 (m, 1H), 1.75-1.80 (m, 1H), 2.46 (s, 3H), 2.75-2.83 (m, 2H), 3.52-3.60 (m, 1H), 3.87 (s, 3H), 5.69 (d, J=11.2 Hz, 1H), 7.76-6.79 (dd, J=2.4 and 9.6 Hz, 1H), 6.86-6.95 (m, 3H), 7.06 (d, J=8.8 Hz, 1H), 7.23-7.28 (m, 1H), 7.53 (d, J=3.2 Hz, 1H). 13C NMR (400 MHz, CDCl3): 22.18, 24.54, 28.97, 46.79, 55.75, 62.97, 107.18, 113.16, 114.65, 118.71, 121.92, 128.05, 130.27, 132.13, 139.57, 155.62, 156.22, 161.60, 164.24, 168.50. Anal. Calcd for C20H19FN2O2: C, 70.99; H, 5.66; N, 8.28. Found: C, 71.03; H, 5.29; N, 8.31.
(20): yield 25%, mp 146-48° C., 1H NMR (400 MHz, CDCl3): 1.89-1.95 (m, 1H), 2.25-2.29 (m, 1H), 2.39 (s, 3H), 2.85-2.87 (m, 2H), 3.16-3.23 (m, 1H), 3.79 (s, 3H), 3.86 (s, 3H), 4.91 (d, J=9.2 Hz, 1H), 6.87-6.93 (m, 3H), 7.09 (d, J=8.4 Hz, 1H), 7.22-7.25 (m, 2H), 7.44 (d, J=2.4 Hz, 1H). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.68; H, 6.20; N, 7.92.
(19): yield 30%, mp 151-53° C., 1H NMR (400 MHz, CDCl3): 1.03-1.11 (m, 1H), 1.72-1.76 (m, 1H), 2.44 (s, 3H), 2.77-2.91 (m, 2H), 3.47-3.55 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.66 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.8 Hz, 2H), 6.89-6.92 (dd, J=3.2 and 8.8 Hz, 1H), 6.99 (d, J=8.4 Hz, 2H), 7.06 (d, J=8.4 Hz, 1H), 7.54 (d, J=2.8 Hz, 1H).). 13C NMR (400 MHz, CDCl3): 22.15, 24.42, 28.93, 48.84, 55.42, 55.70, 63.03, 107.76, 112.66, 114.15, 118.56, 127.44, 127.88, 128.39, 129.26, 130.24, 132.32, 155.60, 158.28, 159.14, 168.56. Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 72.14; H, 6.42; N, 7.78.
(76): yield 27%, mp 175-78° C., 1H NMR (500 MHz, CDCl3): 1.85-1.89 (m, 1H), 2.32-2.35 (m, 1H), 2.38 (s, 3H), 2.53-2.60 (m, 1H), 3.09-3.18 (m, 2H), 3.79 (s, 3H), 3.84 (s, 3H), 4.91 (d, J=9.5 Hz, 1H), 6.86-6.89 (m, 3H), 7.23-7.27 (m, 3H), 7.57 (d, J=7.5 Hz, 1H).). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.72; H, 6.35; N, 8.02.
(31): yield 43%, mp 203-207° C., 1H NMR (500 MHz, CDCl3): 0.98-1.07 (m, 1H), 1.74-1.79 (m, 1H), 2.43 (s, 3H), 2.45-2.52 (m, 1H), 3.04-3.09 (m, 1H), 3.48-3.54 (m, 1H), 3.76 (s, 3H), 3.82 (s, 3H), 5.68 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.86 (d, J=8.0 Hz, 1H), 7.00 (d, J=8.5 Hz, 2H), 7.24 (t, J=8.0 Hz, 1H), 7.68 (d, J=8.0 Hz, 1H).). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.98; H, 6.05; N, 8.06.
(115): yield 27%, mp 157-60° C., 1H NMR (500 MHz, CDCl3): 1.09-1.18 (m, 1H), 1.67-1.72 (m, 1H), 2.49 (s, 3H), 2.83-2.95 (m, 2H), 3.53-3.59 (m, 1H), 3.78 (s, 3H), 3.98 (s, 3H), 5.57 (d, J=11.0 Hz, 1H), 6.77 (d, J=7.0 Hz, 1H), 6.80 (d, J=9.0 Hz, 2H), 6.84 (d, J=9.0 Hz, 1H), 7.04 (d, J=9.0 Hz, 2H), 7.25 (t, J=9.0 Hz, 1H).). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.25; H, 6.44; N, 7.94.
(74): yield 20%, mp 260-62° C., 1H NMR (500 MHz, CDCl3): 1.91-2.00 (m, 1H), 2.27-2.32 (m, 1H), 2.38 (s, 3H), 2.99-2.95 (m, 2H), 3.20-3.25 (m, 1H), 3.78 (s, 3H), 4.91 (d, J=9.5 Hz, 1H), 6.88 (d, J=9.0 Hz, 2H), 7.17 (d, J=2.5 Hz, 1H), 7.23-7.34 (m, 4H), 7.86 (d, J=7.0 Hz, 1H).). Anal. Calcd for C20H20N2O2: C, 74.98; H, 6.29; N, 8.74. Found: C, 74.15; H, 6.18; N, 8.58.
(24): yield 30%, mp 257-60° C., 1H NMR (400 MHz, CDCl3): 1.01-1.11 (m, 1H), 1.70-1.75 (m, 1H), 2.40 (s, 3H), 2.76-2.89 (m, 2H), 3.47-3.54 (m, 1H), 3.71 (s, 3H), 5.63 (d, J=11.2 Hz, 1H), 6.76 (d, J=8.4 Hz, 2H), 6.96 (d, J=8.8 Hz, 2H), 7.11 (d, J=6.8 Hz, 1H), 7.23-7.29 (m, 2H), 8.02-8.04 (dd, J=1.6 and 7.6 Hz, 1H). Anal. Calcd for C20H20N2O2: C, 74.98; H, 6.29; N, 8.74. Found: C, 74.73; H, 6.32; N, 8.75.
(73): yield 20%, mp 170-75° C., 1H NMR (400 MHz, CDCl3): 1.90-2.01 (m, 1H), 2.23-2.28 (m, 1H), 2.38 (s, 3H), 2.83-2.87 (m, 2H), 3.10-3.17 (m, 1H), 3.83 (s, 3H), 4.98 (d, J=9.2 Hz, 1H), 6.89-6.91 (dd, J=2.4 and 7.6 Hz, 1H), 7.07 (d, J=8.4 Hz, 1H), 7.40 (d, J=2.4 Hz, 1H), 7.43 (d, J=8.4 Hz, 2H), 8.19 (d, J=8.4 Hz, 2H). HFABMS m/z 366.1462 (calc for C20H19N3O4, MH+, 366.1454).
(23): yield 29%, mp 219-21° C., 1H NMR (400 MHz, CDCl3): 0.91-1.01 (m, 1H), 1.71-1.75 (m, 1H), 2.43 (s, 3H), 2.75-2.82 (m, 2H), 3.57-3.64 (m, 1H), 3.84 (s, 3H), 5.74 (d, J=11.6 Hz, 1H), 6.88-6.91 (dd, J=3.2 and 8.4 Hz, 1H), 7.22 (d, J=9.6 Hz, 2H), 7.48 (d, J=3.2 Hz, 1H), 8.13 (d, J=9.6 Hz, 2H). Anal. Calcd for C20H19N3O4: C, 65.74; H, 5.24; N, 11.50. Found: C, 65.48; H, 5.09; N, 11.38.
(75): yield 11%, mp 149-51° C., 1H NMR (500 MHz, CDCl3): 1.88-1.97 (m, 1H), 2.25-2.29 (m, 1H), 2.39 (s, 3H), 2.86-2.88 (m, 2H), 3.17-3.22 (m, 1H), 3.87 (s, 3H), 4.95 (d, J=9.2 Hz, 1H), 5.07 (s, 2H), 6.90-6.92 (dd, J=3.0 and 9.0 Hz, 1H), 6.96 (d, J=9.0 Hz, 2H), 7.09 (d, J=8.5 Hz, 1H), 7.23 (d, J=8.5 Hz, 2H), 7.25 (s, 1H), 7.30-7.43 (m, 4H). Anal. Calcd for C27H26N2O3: C, 76.03; H, 6.14; N, 6.57. Found: C, 76.07; H, 5.95; N, 6.60.
(28): yield 41%, mp 156-61° C., 1H NMR (400 MHz, CDCl3): 1.01-1.14 (m, 1H), 1.72-1.79 (m, 1H), 2.45 (s, 3H), 2.75-2.83 (m, 2H), 3.87 (s, 3H), 4.99 (s, 2H), 5.67 (d, J=10.8 Hz, 1H), 6.87-6.92 (m, 2H), 6.99 (d, J=8.4 Hz, 1H), 7.06 (d, J=8.8 Hz, 1H), 7.30-7.40 (m, 7H), 7.54 (d, J=3.2 Hz, 1H). Anal. Calcd for C27H26N2O3: C, 76.03; H, 6.14; N, 6.57. Found: C, 76.01; H, 5.87; N, 6.60.
(77): yield 21%, mp 165-69° C., 1H NMR (500 MHz, CDCl3): 1.87-1.94 (m, 1H), 2.25-2.29 (m, 1H), 2.41 (s, 3H), 2.86-2.88 (m, 2H), 3.14-3.19 (m, 1H), 3.84 (s, 3H), 4.87 (d, J=9.4 Hz, 1H), 5.94 (s, 2H), 6.76-6.78 (m, 3H), 6.90-6.93 (dd, J=3.0 and 8.5 Hz, 1H), 7.09 (d, J=9.0 Hz, 1H), 7.42 (d, J=2.5 Hz, 1H). Anal. Calcd for C21H20N2O4: C, 69.22; H, 5.53; N, 7.69. Found: C, 68.94; H, 5.65; N, 7.60.
(34): yield 41%, mp 206-209° C., 1H NMR (500 MHz, CDCl3): 1.08-1.17 (m, 1H), 1.75-1.80 (m, 1H), 2.42 (s, 3H), 2.76-2.84 (m, 2H), 3.47-3.53 (m, 1H), 3.87 (s, 3H), 5.62 (d, J=11.4 Hz, 1H), 5.90 (s, 2H), 6.52 (d, J=1.5 Hz, 1H), 6.57-6.59 (dd, J=1.5 and 8.0 Hz, 1H), 6.72 (d, J=7.5 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 7.07 (d, J=8.2 Hz, 1H), 7.52 (d, J=2.5 Hz, 1H). Anal. Calcd for C21H20N2O4: C, 69.22; H, 5.53; N, 7.69. Found: C, 69.00; H, 5.23; N, 7.55.
(78): yield 28%, mp 194-97° C., 1H NMR (500 MHz, CDCl3): 1.82-1.94 (m, 1H), 2.25-2.30 (m, 1H), 2.40 (s, 3H), 2.82-2.84 (m, 2H), 3.16-3.20 (M, 1H), 3.86 (s, 3H), 4.27 (s, 4H), 4.82 (d, J=9.0 Hz, 1H), 6.77-6.81 (m, 2H), 6.84 (d, J=8.0 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 9.0 Hz, 1H), 7.08 (d, J=8.5 Hz, 1H), 7.42 (d, J=2.5 Hz, 1H). Anal. Calcd for C22H22N2O4: C, 69.83; H, 5.86; N, 7.40. Found: C, 68.58; H, 5.75; N, 7.25.
(36): yield 17%, mp 189-93° C., 1H NMR (500 MHz, CDCl3): 1.06-1.15 (m, 1H), 1.78-1.80 (m, 1H), 2.41 (s, 3H), 2.75-2.86 (m, 2H), 3.46-3.52 (m, 1H), 3.87 (s, 3H), 4.22 (s, 4H), 5.60 (d, J=11.5 Hz, 1H), 6.55-6.58 (m, 2H), 6.76 (d, J=8.5 Hz, 1H), 6.89-6.91 (dd, J=3.0 and 9.0 Hz, 1H), 7.06 (d, J=8.0 Hz, 1H), 7.52 (d, J=3.0 Hz, 1H). Anal. Calcd for C22H22N2O4: C, 69.83; H, 5.86; N, 7.40. Found: C, 69.53; H, 5.70; N, 7.27.
(89): yield 36%, mp 155-57° C., 1H NMR (500 MHz, CDCl3): 1.03-1.12 (m, 1H), 1.72-1.77 (m, 1H), 2.44 (s, 3H), 2.74-2.86 (m, 2H), 3.48-3.54 (m, 1H), 3.75 (s, 3H), 5.12 (s, 2H), 5.66 (d, J=10.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.96 (d, J=3.0 Hz, 1H), 6.99 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.0 Hz, 2H), 7.33-7.47 (m, 4H), 7.64 (d, J=3.0 Hz, 1H). Anal. Calcd for C27H26N2O3: C, 76.03; H, 6.14; N, 6.57. Found: C, 76.01; H, 5.87; N, 6.60.
(95): yield 22%, mp 144-47° C., 1H NMR (500 MHz, CDCl3): 1.02-1.09 (m, 1H), 1.73-1.76 (m, 1H), 2.43 (s, 3H), 2.45 (s, 3H), 2.74-2.86 (m, 2H), 3.50-3.56 (m, 1H), 3.87 (s, 3H), 5.66 (d, J=10.5 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 6.99 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.16 (d, J=8.5 Hz, 2H), 7.53 (d, J=3.0 Hz, 1H). Anal. Calcd for C21H22N2O2S: C, 68.82; H, 6.05; N, 7.64. Found: C, 68.76; H, 6.00; N, 7.66.
(105): yield 15%, mp 218-20° C., 1H NMR (400 MHz, CDCl3): 2.36 (s, 3H), 2.42 (s, 3H), 3.53-3.57 (m, 1H), 4.13-4.19 (m, 1H), 4.60-4.64 (m, 1H), 4.99 (d, J=8 Hz, 1H), 6.85 (d, J=8 Hz, 1H), 7.05-7.09 (m, 2H), 7.16-7.31 (m, 3H), 7.63 (s, 1H). HFABMS m/z 325.1354 (calc for C19H17FN2O2, MH+, 325.1352).
(104): yield 42%, mp 243-46° C., 1H NMR (400 MHz, CDCl3): 2.36 (s, 3H), 2.48 (s, 3H), 3.29 (t, J=12 Hz, 1H), 3.72-3.83 (m, 1H), 4.14-4.18 (m, 1H), 5.77 (d, J=12 Hz, 1H), 6.82 (d, J=8 Hz, 1H), 7.0-7.15 (m, 5H), 7.78 (s, 1H). HFABMS m/z 325.1359 (calc for C19H17FN2O2, MH+, 325.1352).
(121): yield 32%, mp 245° C. 1H NMR (500 MHz, CDCl3): 2.45 (s, 3H), 3.21-3.27 (m, 1H), 3.84 (s, 3H), 3.82-3.87 (m, 1H), 4.10-4.14 (dd, J=10.5 and 12.5 Hz, 1H), 4.55-4.59 (dd, J=6.0 and 10.5 Hz, 1H), 5.75 (d, J=10.5 Hz, 1H), 6.82 (d, J=9.0 Hz, 1H), 6.91-6.94 (dd, J=3.5 and 9.5 Hz, 1H), 6.98-7.01 (dd, J=8.5 and 8.5 Hz, 2H), 7.06-7.08 (m, 2H). 7.33 (d, J=3.5 Hz, 1H). HFABMS m/z 341.1304 (calc for C19H17FN2O3, MH+, 341.1301).
(91): yield 33%, mp 122-26° C., 1H NMR (500 MHz, CDCl3): 1.02-1.11 (m, 1H), 1.72 (m, 1H), 2.44 (s, 3H), 2.60 (t, J=4.5 Hz, 4H), 2.76-2.84 (m, 4H), 3.48-3.54 (m, 1H), 3.74-3.79 (m, 7H), 4.16-4.19 (m, 2H), 5.66 (d, J=10.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.90-6.93 (dd, J=3.0 and 9.0 Hz, 1H), 6.99 (d, H=8.5 Hz, 2H), 7.06 (d, J=9.0 Hz, 1H), 7.55 (d, J=3.0 Hz, 1H). HFABMS m/z 450.2391 (calc for C26H31N3O4, MH+, 450.2393).
(90): 32% yield, mp 185-87° C., 1H NMR (400 MHz, CDCl3): 1.01-1.09 (m, 1H), 1.72-1.77 (m, 1H), 2.15-2.20 (m, 2H), 2.44 (s, 3H), 2.73-2.85 (m, 2H), 3.48-3.53 (m, 3H), 3.63-3.68 (m, 6H), 3.75 (s, 3H), 4.08-4.12 (m, 2H), 5.65 (d, J=10.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.88-6.90 (dd, J=3.0 and 8.5 Hz, 1H), 6.99 (d, J=8.5 Hz, 2H), 7.05 (d, J=8.5 Hz, 1H), 7.53 (d, J=3.0 Hz, 1H). HFABMS m/z 492.2493 (calc for C28H33N3O5, MH+, 492.2498).
Preparation of (11): A mixture of (23) (0.260 mg, 0.71 mmol), 5% Pd—C (25 mg) in ethanol (10 mL) and methanol (5 mL) was stirred under a hydrogen atmosphere for 2 days. The mixture was filtered, washed sequentially with ethyl acetate and acetic acid. The combined filtrates were concentrated. The solid obtained was recrystallized from ethyl acetate to give (11) (0.205 g, 86%): mp 224-26° C., 1H NMR (400 MHz, CDCl3): 0.79-0.83 (m, 1H), 1.47-1.50 (m, 1H), 2.52 (m, 5H), 3.19-3.26 (m, 1H), 3.60 (s, 3H), 5.31 (d, J=10.8 Hz, 1H), 6.33 (d, J=8.0 Hz, 2H), 6.55-6.49 (m, 3H), 6.81 (d, J=8.4 Hz, 1H), 7.26 (m, 1H). HFABMS m/z 336.1717 (calc for C20H21N3O2, MH+, 336.1712).
Preparation of (10): A mixture of (28) (0.370 mg, 0.86 mmol), 5% Pd—C (10 mg) in ethyl acetate (20 mL) was stirred under a hydrogen atmosphere for 20 h and then filtered though the pad of celite. The celite was then washed sequentially with ethyl acetate and acetic acid. The combined filtrates were concentrated. The solid obtained was recrystallized from ethyl acetate to give (10) (0.185 g, 63%): mp 240-41° C., 1H NMR (400 MHz, d6-DMSO-CDCl3): 0.99-1.11 (m, 1H), 1.72-1.76 (m, 1H), 2.43 (s, 3H), 2.67-2.83 (m, 2H), 3.46-3.53 (m, 1H), 3.87 (s, 3H), 5.61 (d, J=10.8 Hz, 1H), 6.74 (d, J=8.4 Hz, 2H), 6.87 (d, J=8.8 Hz, 2H), 6.61 (m, 1H), 7.07 (d, J=8.4 Hz, 1H), 7.43-7.46 (m, 1H), 7.52 (d, J=3.2 Hz, 1H). Anal. Calcd for C20H20N2O3: C, 71.41; H, 5.99; N, 8.33. Found: C, 71.12; H, 5.94; N, 8.32.
Preparation of (12): To a solution of (10) (0.100 g, 0.28 mmol) under an argon atmosphere in dichloromethane (5 mL) was added BBr3 (1.0 mL, 1.0 M solution in dichloromethane) at −78° C. The reaction mixture was stirred at rt for 1 h and then poured into an ice cold solution of HCl (1.0 N). The mixture was extracted in ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The solid obtained was recrystallized from ethyl acetate to give (12): (0.062 g, 67%): mp 164-67° C., 1H NMR (400 MHz, DMSO-CDCl3): 0.70-0.90 (m, 1H), 1.41-1.46 (m, 1H), 2.41-2.57 (m, 5H), 3.15-3.22 (m, 1H), 5.29 (d, J=11.2 Hz, 1H), 6.43 (d, J=6.8 Hz, 2H), 6.53-6.57 (m, 3H), 6.68 (d, J=8.4 Hz, 1H), 7.19 (s, 1H). HFABMS m/z 323.1399 (calc for C19H18N2O3, MH+, 323.1396).
Preparation of (26) and (25): A solution of 2-(4-methoxybenzylidene)-7-methoxy-1-tetralone (2.0 g, 0.0068 mol), hydrazine hydrate (2.0 mL) in formic acid (20 mL) was heated at 120° C. for 2 days. The reaction mixture was concentrated and then extracted with ethyl acetate. The organic layer was washed sequentially with water, saturated aqueous NaHCO3, water and brine, dried over anhydrous Na2SO4, filtered, and then concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to give compounds (26) (0.740 g, 32%) and (25) (0.905 g, 40%).
(26): mp 166-68° C., 1H NMR (400 MHz, CDCl3): 1.90-1.99 (m, 1H), 2.27-2.31 (m, 1H), 2.86-2.90 (m, 2H), 3.21-3.28 (m, 1H), 3.80 (s, 3H), 3.86 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.90-6.98 (m, 3H), 7.10 (d, J=8.8 Hz, 1H), 7.25-7.27 (m, 2H), 7.43 (d, J=2.4 Hz, 1H), 8.97 (s, 1H). Anal. Calcd for C20H20N2O3: C, 71.41; H, 5.99; N, 8.33. Found: C, 71.16; H, 6.03; N, 8.26.
(25): mp 155-59° C., 1H NMR (400 MHz, CDCl3): 1.01-1.12 (m, 1H), 1.69-1.74 (m, 1H), 2.68-2.85 (m, 2H), 3.49-3.76 (m, 1H), 3.76 (s, 3H), 3.81 (s, 3H), 5.58 (d, J=11.2 Hz, 1H), 6.78-7.04 (m, 6H), 7.48 (d, J=3.2 Hz, 1H), 8.94 (s, 1H). Anal. Calcd for C20H20N2O3: C, 71.41; H, 5.99; N, 8.33. Found: C, 71.08; H, 5.66; N, 8.28.
Preparation of (79) and (39): A solution of 2-(4 methoxybenzylidene)-7-methoxy-1-tetralone (0.500 g, 1.7 mmol) and hydrazine hydrate (0.5 mL) in propionic acid (5 mL) was refluxed at 140° C. for 2 days. The reaction mixture was concentrated, and the residue dissolved in ethyl acetate (25 mL). The mixture was washed sequentially with water, saturated aqueous NaHCO3 and water, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to give (79) (0.217 g, 35%) and (39) (0.252 g, 41%).
(79): mp 133-36° C., 1H NMR (400 MHz, CDCl3): 1.15 (t, J=7.6 Hz, 3H), 1.85-1.96 (m, 1H), 2.23-2.29 (m, 1H), 2.74-2.87 (m, 4H), 3.15-3.22 (m, 1H), 3.78 (s, 3H), 3.86 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.87-6.92 (m, 3H), 7.08 (d, J=8.4 Hz, 1H), 7.23 (d, J=8.8 Hz, 2H), 7.44 (d, J=2.4 Hz, 1H). Anal. Calcd for C22H24N2O3: C, 72.50; H, 6.64; N, 7.69. Found: C, 72.33; H, 6.50; N, 7.61.
(39): mp 150-52° C., 1H NMR (400 MHz, CDCl3): 1.05-1.10 (m, 1H), 1.21 (t, J=8.0 Hz, 3H), 1.70-1.78 (m, 1H), 2.74-2.88 (m, 4H), 3.47-3.52 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.65 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.4 Hz, 2H), 6.89-6.92 (dd, J=3.2 and 8.4 Hz, 1H), 6.98 (d, J=8.8 Hz, 2H), 7.06 (d, J=8.4 Hz, 1H), 7.54 (d, J=3.2 Hz, 1H). Anal. Calcd for C22H24N2O3: C, 72.50; H, 6.64; N, 7.69. Found: C, 72.29; H, 6.57; N, 7.77.
General procedure for the preparation of 3,3a-trans and 3,3a-cis N-Substituted-1-[3-(aryl)-3,3a,4,5-tetrahydro-benzo[g]indazoles], exemplified for (138) and (85)): A solution of 2-(4-methoxybenzylidene)-1-tetralone (1.0 g, 0.0034 mol), trimethylacetic acid (5.0 g), hydrazine hydrate (1.0 mL) in ethanol (5 mL) was refluxed for 6 hours, and then concentrated. The residue obtained was dissolved in ethyl acetate (200 mL) and then washed with water. The organic layer was slowly poured into a saturated NaHCO3 solution (250 mL). The resulting solution was slowly treated with methyl-5-chloro-5-oxovalerate (1.410 mL, 0.01 mol). The mixture was stirred at room temperature for 30 minutes. The ethyl acetate layer was separated, washed sequentially with water and brine, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel column using ethyl acetate-hexane (3:7) as eluent to give compounds (138) (47%) and (85) (23%).
(138): mp 145-47° C., 1H NMR (500 MHz, CDCl3): 1.89-2.04 (m, 3H), 2.24-2.29 (m, 1H), 2.40 (t, J=7.6 Hz, 2H), 2.83-2.88 (m, 4H), 3.16-3.21 (m, 1H), 3.65 (s, 3H), 3.79 (s, 3H), 3.87 (s, 3H), 4.89 (d, J=9.4 Hz, 1H), 6.87-6.92 (m, 3H), 7.09 (d, J=8.5 Hz, 1H), 7.23 (d, J=9.0 Hz, 1H), 7.44 (d, J=2.5 Hz, 1H). HFABMS m/z 437.2079 (calc for C25H28N2O5, MH+, 437.2076).
(85): mp 159-61° C., 1H NMR (500 MHz, CDCl3): 1.08-1.11 (m, 1H), 1.71-1.76 (m, 1H), 2.02-2.09 (m, 2H), 2.44 (t, J=8.0 Hz, 2H), 2.78-2.96 (m, 4H), 3.47-3.53 (m, 1H), 3.66 (s, 3H), 3.75 (s, 3H), 3.88 (s, 3H), 5.64 (d, J=11.0 Hz, 1H), 6.80 (d, J=9.0 Hz, 2H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 6.98 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.0 Hz, 1H), 7.53 (d, J=3.0 Hz, 1H). HFABMS m/z 437.2075 (calc for C25H28N2O5, MH+, 437.2076).
(80): 11% yield, mp 159-61° C., 1H NMR (400 MHz, CDCl3): 1.87-1.98 (m, 1H), 2.13 (s, 3H), 2.26-2.31 (m, 1H), 2.86-2.89 (m, 2H), 3.17-3.24 (m, 1H), 3.78 (s, 3H), 3.86 (s, 3H), 4.90 (d, J=9.2 Hz, 1H), 5.09 (d, J=15.6 Hz, 1H), 5.22 (d, J=15.6 Hz, 1H), 6.87-6.95 (m, 3H), 7.10 (d, J=8.8 Hz, 1H), 7.24 (d, J=8.8 Hz, 2H), 7.41 (d, J=3.2 Hz, 1H). Anal. Calcd for C23H24N2O5: C, 67.83; H, 5.90; N, 6.86. Found: C, 67.32; H, 5.88; N, 6.97.
(47): 68% yield, mp 201-204° C., 1H NMR (400 MHz, CDCl3): 1.05-1.16 (m, 1H), 1.73-1.77 (m, 1H), 2.16 (s, 3H), 2.72-2.89 (m, 2H), 3.48-3.55 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.16-5.25 (m, 2H), 5.64 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.8 Hz, 2H), 6.91-6.94 (dd, J=2.0 and 8.4 Hz, 1H), 6.99 (d, J=8.8 Hz, 2H), 7.07 (d, J=7.49 (d, J=3.2 Hz, 1H). Anal. Calcd for C23H24N2O5: C, 67.83; H, 5.90; N, 6.86. Found: C, 67.38; H, 5.87; N, 6.91.
(93): mp 47-50° C., thick oil, 1H NMR (500 MHz, CDCl3): 1.04-1.09 (m, 1H), 1.27-1.38 (m, 9H), 1.59-1.64 (m, 2H), 1.68-1.76 (m, 2H), 2.29 (t, J=7.5 Hz, 2H), 2.72-2.88 (m, 4H), 3.48-3.64 (m, 1H), 3.65 (s, 3H), 3.75 (s, 3H), 3.87 (s, 3H), 5.64 (d, J=11.0 Hz, 1H), 6.79 (d, J=9.0 Hz, 2H), 6.89-6.91 (dd, J=2.5 and 8.5 Hz, 1H), 6.98 (d, J=9.0 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.54 (d, J=2.5 Hz, 1H). HFABMS m/z 507.2853 (calc for C30H38N2O5, MH+, 507.2859).
(20): yield 16%, mp 157-59° C., 1H NMR (500 MHz, CDCl3): 1.06-1.12 (m, 1H), 1.75-1.77 (m, 1H), 2.76-2.88 (m, 2H), 3.46-3.50 (m, 1H), 3.51 (s, 3H), 3.75 (s, 3H), 3.87 (s, 3H), 4.54 (d, J=16.0 Hz, 1H), 4.66 (d, J=16.0 Hz, 1H), 5.68 (d, J=11.0 Hz, 1H), 6.80 (d, J=9.5 Hz, 2H), 6.91-6.93 (dd, J=3.0 and 9.0 Hz, 1H), 6.98 (d, J=9.5 Hz, 2H), 7.07 (d, J=8.0 Hz, 1H), 7.50 (d, J=3.0 Hz, 1H). HFABMS m/z 381.1810 (calc for C22H24N2O4, MH+, 381.1814).
(97): yield 22%, mp 220-22° C., 1H NMR (500 MHz, CDCl3): 1.09-1.18 (m, 1H), 1.75-1.80 (m, 1H), 2.77-2.89 (m, 2H), 3.53-3.59 (m, 1H), 3.76 (s, 3H), 3.87 (s, 3H), 5.68 (d, J=10 Hz, 1H), 6.84 (d, J=8.5 Hz, 2H), 6.94-6.97 (dd, J=3.0 and 8.5 Hz, 1H), 7.01 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.5 Hz, 1H), 7.56 (d, J=3.0 Hz, 1H). HFABMS m/z 405.1432 (calc for C21H19F3N2O3, MH+, 405.1426).
Preparation of 3,3a-trans and 3,3a-cis 2-Acetoxy-1-[8-methoxy-3-(4-methoxy-phenyl)-3,3a,4,5-tetrahydro-benzo[g]-indazol-2-yl]-propan-1-one ((139), (100), and (101)): A solution of 2-(4-methoxy-benzylidene)-1-tetralone (1.1 g, 0.0037 mol), trimethylacetic acid (6.0 g), hydrazine hydrate (1.1 mL) in ethanol (5 mL) was refluxed for 6 h, and concentrated under vacuum. The residue obtained was dissolved in ethyl acetate (200 mL) and it was slowly poured on saturated NaHCO3 solution (200 mL), and the resulting solution was slowly treated with (S)-acetoxy-propionyl chloride (2.350 mL, 0.018 mol), and stirred at room temperature for 30 minutes. The ethyl acetate layer was separated, washed with water, brine, dried on Na2SO4 and concentrated. The residue purified on the silica gel column using ethyl acetate-hexane (35%). Earlier fractions furnished (139) (0.440 g, 28%), and the later fractions furnished (100) (0.508 g, 32%), and (101) (0.130 mg, 8%).
(139): mp 146-50° C., 1H NMR (500 MHz, CDCl3): 1.50 (d, J=7.0 Hz, 3H), 1.58 (d, J=7.0 Hz, 3H), 1.88-1.99 (m, 2H), 2.08 (s, 3H), 2.09 (s, 3H), 2.24-2.32 (m, 2H), 2.82-2.92 (m, 4H), 3.14-3.20 (m, 2H), 3.79 (s, 6H), 3.87 (s, 6H), 4.91-4.98 (m, 2H), 5.86-5.93 (m, 2H), 6.86-6.94 (m, 5H), 7.10 (d, J=8.5 Hz, 2H), 7.19-7.26 (m, 5H), 7.41-7.43 (m, 2H). Anal. Calcd for C24H26N2O5: C, 68.23; H, 6.20; N, 6.63. Found: C, 67.96; H, 6.20; N, 6.36.
(100): mp 70-76° C. (dec.), 1H NMR (500 MHz, CDCl3): 0.97-1.06 (m, 1H), 1.56 (d, J=7.0 Hz, 3H), 1.75-1.79 (m, 1H), 2.10 (s, 3H), 2.73-2.86 (m, 2H), 3.48-3.53 (m, 1H), 3.74 (s, 3H), 3.86 (s, 3H), 5.64 (d, J=11.0 Hz, 1H), 6.03 (dd, J=7.0 and 14.0 Hz, 1H), 6.81 (d, J=9.0 Hz, 2H), 6.90-6.92 (dd, J=3.0 and 9.0 Hz, 1H), 7.02-7.06 (m, 3H), 7.51 (d, J=3.0 Hz, 1H). HFABMS m/z 423.1927 (calc for C24H26N2O5, MH+, 423.1920).
(101): mp 139-42° C. (dec.), 1H NMR (400 MHz, CDCl3): 1.12-1.18 (m, 1H), 1.60 (d, J=6.8 Hz, 3H), 1.70-1.74 (m, 1H), 2.12 (s, 3H), 2.78-2.85 (m, 2H), 3.50-3.57 (m, 1H), 3.75 (s, 3H), 3.85 (s, 3H), 5.65 (d, J=11.2 Hz, 1H), 5.80-5.90 (dd, J=5.6 and 11.6 Hz, 1H), 6.79 (d, J=8.4 Hz, 2H), 6.91-6.97 (m, 3H), 7.07 (d, J=8.0 Hz, 1H), 7.52 (d, J=3.2 Hz, 1H). Anal. Calcd for C24H26N2O5: C, 68.23; H, 6.20; N, 6.63. Found: C, 67.99; H, 6.32; N, 6.50.
Preparation of (102): To a solution of (103) (0.50 g, 0.11 mmol) in methanol (5 mL), was added NaOH (50%, 1 mL) at room temperature. The reaction mixture was stirred at room temperature for 23 hours. Then it was diluted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified by column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to furnish (102) (0.027 g, 60%): mp 207-211° C., 1H NMR (400 MHz, CDCl3): 1.06-1.14 (m, 1H), 1.50 (d, J=6.4 Hz, 3H), 1.72-1.80 (m, 1H), 2.76-2.88 (m, 2H), 3.50−3.59=8 (m, 1H), 3.59 (d, J=8.0 Hz, 1H), 3.75 (s, 3H), 3.85 (s, 3H), 4.96-4.04 (m, 1H), 5.63 (d, J=10.4 Hz, 1H), 6.82 (d, J=8.8 Hz, 2H), 6.92-7.00 (m, 3H), 7.08 (d, J=8.4 Hz, 1H), 7.51 (d, J=2.4 Hz, 1H). Anal. Calcd for C22H24N2O4: C, 69.46; H, 6.36; N, 7.36. Found: C, 69.07; H, 6.25; N, 7.21.
Preparation of (103): To a solution of (101) (0.50 g, 0.11 mmol) in methanol (5 mL), was added NaOH (50%, 1 mL) at room temperature. The reaction mixture was stirred at room temperature for 23 h. Then it was diluted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to furnish (103) (0.031 g, 69%): mp 83-88° C., 1H NMR (500 MHz, CDCl3): 1.07-1.16 (m, 1H), 1.56 (d, J=7.0 Hz, 3H), 1.73-1.78 (m, 1H), 2.77-2.88 (m, 2H), 3.50-3.56 (m, 1H), 3.76 (s, 3H), 3.88 (s, 3H), 4.88-4.96 (m, 1H), 5.72 (d, J=13.0 Hz, 1H), 6.83 (d, J=8.5 Hz, 1H), 6.93-6.96 (dd, J=3.0 and 9.0 Hz, 1H), 7.00 (d, J=8.5 Hz, 2H), 7.09 (d, J=8.5 Hz, 1H), 7.52 (d, J=3.0 Hz, 1H). Anal. Calcd for C22H24N2O4: C, 69.46; H, 6.36; N, 7.36. Found: C, 68.74; H, 6.27; N, 7.22.
Preparation of (98): To a solution of (102) (80 mg, 0.21 mmol), N-methylmorpholine-oxide hydrochloride (75 mg, 0.63 mmol) in dichloromethane (5 mL) was added tetrapropylammonium perruthenate (5 mg), and stirred at room temperature for 5 min. Then it was filtered, concentrated and purified on the silica gel column using an eluent 25% ethyl acetate-hexane to give (98) (62 mg, 78%): mp 175-78° C., 1H NMR (500 MHz, CDCl3): 1.09-1.13 (m, 1H), 1.74-1.78 (m, 1H), 2.76-2.88 (m, 2H), 3.77 (s, 3H), 3.84 (s, 3H), 5.65 (d, J=10.5 Hz, 1H), 6.85 (d, J=8.5 Hz, 2H), 6.92-6.94 (dd, J=3.0 and 8.5 Hz, 1H), 7.04 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.5 Hz, 1H), 7.44 (d, J=3.0 Hz, 1H). HFABMS m/z 379.1658 (calc for C22H22N2O4, MH+, 379.1661).
Preparation of (48): To a solution of (47) (0.150 g, 0.36 mmol) in methanol (10 mL) was added NaOH (50%, 2 mL) at room temperature. The reaction mixture was stirred at room temperature for 24 hours before being diluted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified by column chromatography on silica gel column using ethyl acetate-hexane (4:6) as eluent to furnish (48) (0.105 g, 78%): mp 163-64° C., 1H NMR (400 MHz, CDCl3): 1.06-1.17 (m, 1H), 1.72-1.78 (m, 1H), 2.76-2.89 (m, 2H), 3.76 (s, 3H), 3.87 (s, 3H), 4.55-7.70 (m, 2H), 5.66 (d, J=10.0 Hz, 1H), 6.82 (d, J=9.2 Hz, 2H), 6.92-6.95 (dd, J=2.4 and 8.8 Hz, 1H), 6.99 (d, J=9.2 Hz, 2H), 7.07 (d, J=8.4 Hz, 1H), 7.50 (d, J=2.4 Hz, 1H). 13C NMR (400 MHz, CDCl3): 24.38, 28.90, 48.57, 55.46, 55.76, 61.40, 69.61, 108.02, 114.34, 119.12, 127.53, 127.84, 128.47, 130.32, 132.61, 157.67, 158.36, 159.42, 168.66. Anal. Calcd for C21H22N2O4: C, 68.84; H, 6.05; N, 7.65. Found: C, 68.98; H, 6.04; N, 7.58.
General procedure for the preparation of N-alylcarboxylic acids of 3,3a-cis-1-[3-(aryl)-3,3a,4,5-tetrahydro-benzo[g]indazoles], exemplified for (86): To a solution of (85) (0.185 g, 0.42 mmol) in methanol (10 mL) and THF (5 mL) was added NaOH (10 N, 1 mL) at room temperature. The reaction mixture was stirred at room temperature for 3 h before being diluted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The solid obtained was recrystallized from ethyl acetate-hexane to give (86) (0.154 g, 86%): mp 170-76° C., 1H NMR (500 MHz, CDCl3): 1.07-1.10 (m, 1H), 1.70-1.75 (m, 1H), 2.05-2.09 (m, 2H), 2.42-2.48 (m, 2H), 2.76-3.02 (m, 4H), 3.48-3.54 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.64 (d, J=13.75 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.90-6.93 (dd, J=3.0 and 8.5 Hz, 1H), 6.98 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.52 (d, J=3.0 Hz, 1H). HFABMS m/z 423.1926 (calc for C24H26N2O5, MH+, 423.1920).
(83): 95% yield, 1H NMR (500 MHz, CDCl3): 1.05-1.08 (m, 1H), 1.32-1.38 (m, 8H), 1.59-1.78 (m, 4H), 2.32 (t, J=8.0 Hz, 2H), 2.79-2.89 (m, 4H), 3.46-3.52 (m, 1H), 3.74 (s, 3H), 3.83-3.85 (m, 1H), 3.87 (s, 3H), 5.65 (d, J=11.5 Hz, 1H), 6.79 (d, J=8.5 Hz, 2H), 6.89-6.91 (dd, J=3.0 and 8.5 Hz, 1H), 6.97 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.54 (d, J=3.0 Hz, 1H), 8.65 (s, 1H), HFABMS m/z 493.2707 (calc for C29H36N2O5, MH+, 493.2702).
General procedure for the preparation of N-alylcarboxamides of 3,3a-cis-1-[3-(aryl)-3,3a,4,5-tetrahydro-benzo[g]indazoles], exemplified for (87): To a suspension of (86) (0.120 g, 0.28 mmol), HUBT (0.108 g, 0.28 mmol), 1-[3-dimethylamino)propyl-3-ethyl-carbodiimide (0.085 g, 0.28 mmol), and N,N-diisopropylethyl amine (0.1 mL, 0.56 mmol) under an argon atmosphere in CH2Cl2 (10 mL) was added morpholine (0.050 mL, 0.58 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 hours. The reaction mixture was diluted with dichloromethane (20 mL) and the organic layer was washed sequentially with HCl (1 N), water, brine, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (8:2) as eluent to give (87) (0.106 g, 75%): mp 163-66° C., 1H NMR (500 MHz, CDCl3): 1.04-1.10 (m, 1H), 1.70-1.78 (m, 1H), 2.01-2.07 (m, 2H), 2.41-2.45 (m, 2H), 2.77-3.00 (m, 6H), 3.44-3.53 (m, 3H), 3.61-3.64 (m, 6H), 3.75 (s, 3H), 3.88 (s, 3H), 5.64 (d, J=13.75 Hz, 1H), 6.80 (d, J=9.0 Hz, 2H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 6.98 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.52 (d, J=3.0 Hz, 1H). HFABMS m/z 492.2491 (calc for C28H33N3O5, MH+, 492.2498).
(94): 72% yield, mp 112-16° C., 1H NMR (500 MHz, CDCl3): 1.03-1.12 (m, 2H), 1.32-1.40 (m, 8H), 1.60-1.64 (m, 2H), 1.68-1.76 (m, 2H), 2.27-2.31 (dd, J=7.5 and 8.0 Hz, 2H), 2.74-2.88 (m, 4H), 3.44-3.52 (m, 3H), 3.60-3.62 (m, 2H), 3.66 (m, 4H), 3.75 (s, 3H), 3.87 (s, 3H), 5.64 (d, J=11.0 Hz, 1H), 6.79 (d, J=8.0 Hz, 2H), 6.89-6.91 (dd, J=2.5 and 8.0 Hz, 1H), 6.97 (d, J=8.0 Hz, 2H), 7.06 (d, J=8.0 Hz, 1H), 7.54 (d, J=2.5 Hz, 1H). HFABMS m/z 562.3271 (calc for C33H44N3O5, MH+, 562.3281).
General procedure for the preparation of N-thioureas or N-ureas of 3,3a-trans and 3, 3a-cis 1-[3-(aryl)-3,3a,4,5-tetrahydro-benzo[g]indazoles], exemplified for (117): A suspension of 2-(4-methoxybenzylidene)-7-methoxy-1-tetralone (0.850 g, 0.0028 mol) and thiosemicarbazide (0.790 g, 0.0084 mol) in ethanol (30 mL) and concentrated HCl (2 mL) was refluxed for six hours. The resulting solution was cooled to room temperature. The solid precipitate was filtered, washed with ethanol and recrystallized from ethanol to give (117) (0.985 g, 96%): mp 236-39° C., 1H NMR (500 MHz, CDCl3): 1.04-1.13 (m, 1H), 1.76-1.81 (m, 1H), 2.75-2.87 (m, 2H), 3.60-3.66 (m, 1H), 3.76 (s, 3H), 3.85 (s, 3H), 6.07 (d, J=10.5 Hz, 1H), 6.83 (d, J=9.0 Hz, 2H), 6.93-6.95 (dd, 3.0 and 8.5 Hz, 1H), 6.99 (d, J=9.0 Hz, 2H), 7.08 (d, J=8.5 Hz, 1H), 7.49 (d, J=3.0 Hz, 1H). HFABMS m/z 368.1439 (calc for C20H21N3O2S, MH+, 368.1433).
(118): yield 28%, mp 199-200° C., 1H NMR (500 MHz, CDCl3): 1.02-1.11 (m, 1H), 1.76-1.81 (m, 1H), 2.75-2.86 (m, 2H), 3.21 (d, J=5.0 Hz, 3H), 3.56-3.62 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 6.10 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.91-6.94 (dd, J=3.0 and 8.5 Hz, 1H), 6.96 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.5 Hz, 1H), 7.46 (m, 1H), 7.48 (d, J=3.0 Hz, 1H). HFABMS m/z 382.1579 (calc for C21H23N3O2S, MH+, 382.1589).
(120): yield 75%, mp 217-20° C., 1H NMR (500 MHz, CDCl3): 1.02-1.11 (m, 1H), 1.74-1.79 (m, 1H), 2.73-2.86 (m, 2H), 3.54-3.60 (m, 1H), 3.75 (s, 3H), 3.86 (s, 3H), 5.58 (d, J=10.5 Hz, 1H), 6.81 (d, J=8.5 Hz, 2H), 6.88-6.90 (dd, J=3.0 and 8.5 Hz, 1H), 7.01 (d, J=8.5 Hz, 2H), 7.05 (d, J=8.5 Hz, 1H), 7.47 (d, J=3.0 Hz, 1H). HFABMS m/z 352.1663 (calc for C20H21N3O3, MH+, 352.1663).
Preparation of (119): A solution of (117) (0.5 g, 1.3 mmol) and methyl iodide (1.0 mL) in ethanol (10 mL) was refluxed for two hours. When the reaction mixture was concentrated to a fourth of its volume, a solid precipitate formed. The mixture was filtered and the solid washed with cold ethanol to give cis-8-methoxy-3-(4-methoxyphenyl)-3,3a,4,5-tetrahydrobenzo[g]indazole-2-carboximidothioic acid methyl ester hydroiodide (565 mg, 85%), which was used without further purification. A solution of cis-8-methoxy-3-(4-methoxyphenyl)-3,3a,4,5-tetrahydrobenzo[g]indazole-2-carboximidothioic acid methyl ester hydroiodide (175 mg, 0.34 mmol) and ammonia (2.0 N solution in ethanol, 15 mL) in ethanol (15 mL) was stirred at 60° C. for 16 hours. The reaction mixture was concentrated. The solid was recrystallized from methanol-diethyl ether to give (119) (105 mg, 88%): mp 170-75° C., 1H NMR (500 MHz, CDCl3): 1.07-1.15 (m, 1H), 1.74-1.78 (m, 1H), 2.76-2.89 (m, 2H), 3.77 (s, 3H), 3.79-3.84 (m, 1H), 3.88 (s, 3H), 6.19 (d, J=10.5 Hz, 1H), 6.86 (d, J=8.5 Hz, 2H), 6.97-6.99 (dd, J=3.0 and 8.5 Hz, 1H), 7.10 (d, J=8.5 Hz, 2H), 7.50 (d, J=3.0 Hz, 1H). HFABMS m/z 351.1825 (calc for C20H22N4O2, MH+, 351.1821).
Preparation of (135): To a solution of (19) (800 mg, 2.2 mmol) in acetonitrile (10 mL) under an argon atmosphere was added trimethylsilyl azide (1.517 mL, 5.0 eq.) followed by slow addition of [bis(trifluoroacetoxy)iodo]-benzene (2.948 g, 3.0 eq.). The reaction mixture was stirred at room temperature for 24 h. The reaction mixture was concentrated to give a dark brown residue that was purified by column chromatography on silica gel using ethyl acetate-hexane (1:3) as eluent to give (135) (252 mg, 29%), and recovered starting material, (19) (45 mg).
(135): thick oil, 1H NMR (500 MHz, CDCl3): 1.82-1.88 (m, 1H), 3.74 (s, 3H), 3.86-3.89 (m, 2H), 3.91 (s, 3H), 4.66 (m, 1H), 5.70 (d, J=11.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.96 (d, J=2H), 7.0-7.02 (dd, J=3.0 nd 9.0 Hz, 1H), 7.19 (d, J=9.0 Hz, 1H), 7.60 (d, J=3.0 Hz, 1H). HFABMS m/z 392.1722 (calc for C21H22N5O3, MH+, 392.1723).
Preparation of (136): A solution of (135) (0.240 g, 0.61 mmol) and 10% Pd—C (50 mg) in ethyl acetate (10 mL) was stirred under hydrogen (80 psi) for 24 h. The reaction mixture was filtered though a short column of celite. The filtrate was triturated with aqueous acetic acid (50%, 10 mL). The solid was recrystallized from ethyl acetate-water to give (136) (0.153 g, 59%): mp 116-19° C., 1H NMR (500 MHz, CDCl3): 1.68-1.72 (m, 1H), 2.10-2.12 (m, 1H), 2.62 (s, 3H), 3.75 (s, 3H), 3.88 (s, 3H), 4.01-4.07 (m, 1H), 4.14-4.16 (m, 1H), 5.69 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.95-6.98 (m, 3H), 7.19 (d, J=9.0 Hz, 1H), 7.53 (d, J=3.0 Hz, 1H). HFABMS m/z 366.1818 (calc for C21H24N3O3, MH+, 366.1818).
Preparation of (137): To a solution of (136) (210 mg, 0.57 mmol) in THF (10 mL) was added formic acid (0.150 mL) at 0° C., followed by slow addition of aqueous formaldehyde (37%). The reaction mixture was refluxed for 24 h. The solution was allowed to cool, basified with aqueous NaOH (25%), and the extracted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate as eluent to give (137) (105 mg, 47%): mp 123-28° C., 1H NMR (500 MHz, CDCl3): 0.9-1.02 (m, 1H), 2.21 (s, 6H), 2.43 (s, 3H), 3.23 (m, 1H), 3.73 (s, 3H), 3.89 (s, 3H), 4.03-4.09 (m, 1H), 5.66 (d, J=11.0 Hz, 1H), 6.78 (d, J=8.5 Hz, 2H), 6.90-6.92 (dd, J=2.5 and 8.5 Hz, 1H), 6.96 (d, J=8.5 Hz, 2H), 7.12 (d, J=8.5 Hz, 1H), 7.58 (d, J=2.5 Hz, 1H). Anal. Calcd for C23H27N3O3: C, 70.21; H, 6.92; N, 10.68. Found: C, 69.93; H, 7.14; N, 10.45.
Preparation of (122): To the solution of (19) (180 mg, 0.51 mmol) in THF (5 mL) was added LiAlH4 (2.056 mL, 2.056 mmol; 1M in THF) at room temperature. The reaction mixture was stirred at room temperature for 1 h and then quenched with methanol followed by ice. The reaction mixture was extracted with ethyl acetate. Organic layer was washed with water, dried over anhydrous sodium sulfate and concentrated. The residue was purified by column chromatography on silica gel using 25% ethyl acetate-hexane as eluent to give (122) (30 mg, 17%): thick oil, 1H NMR (500 MHz, CDCl3): 1.40 (t, J=7.0 Hz, 3H), 1.72-2.04 (m, 2H), 2.62-2.85 (m, 2H), 3.87 (s, 6H), 4.15 (q, J=7.0 Hz, 2H), 4.75 (d, J=10.5 Hz, 1H), 6.75-6.77 (dd, J=8.0 and 3.0 Hz, 1H), 7.01 (d, J=8.0 Hz, 2H), 7.12 (d, J=8.5 Hz, 1H), 7.29 (d, J=8.0 Hz, 2H), 7.44 (d, J=3.0 Hz, 1H). LRMS m/z 336.3 (calc for C21H24N2O2, M+, 336.2).
Other compounds, e.g., (6), (7), (8), (9), (17), (18), (21), (27), (29), (30), (32), (33), (35), (37), (38), (40), (41), (42), (43), (44), (45), (46), (81), (83), (88), (96), (99), (106), (107), (108), (109), (110), (111), (112), (114), and (116) were prepared using analogous procedures to those described herein.
Example 22 The Role of Fas-Associated Death Domain Protein in zVAD-Fmk/TNFα- or zVAD-Fmk/DMSO-Induced NecrosisA cell expressing a dominant negative form of the protein Fas-associated death domain (FADD) can also prevent a cell from undergoing necrosis in response to treatment with zVAD-fmk/TNFα- or zVAD-fmk/DMSO. Jurkat cells were stably transfected with a FADD-FKBP fusion construct (Kawahara et al., J. Cell Biol. 143:1353-60, 1998). Normally, such cells undergo apoptosis when FADD is multimerized. However, these cells, in the presence of the caspase inhibitor zVAD-fmk, are protected from apoptosis, and instead undergo necrosis, thus establishing the dependence of apoptosis in this system on caspase activity and induction of necrosis in the absence of caspases.
The stably transfected Jurkat cells (500,000 cells/ml) were treated with 100 nM of FKBP dimerizer (Ariad Pharmaceuticals; used to stimulate FADD multimerization) in the presence of 100 μM of zVAD-fmk (pre-treated for one hour) and compounds from the library identified to decrease necrosis (dissolved in DMSO to give a final DMSO concentration of 0.5%; added 30 minutes after zVAD-fmk) for 48 hours. Cell viability was then assessed by measuring cellular ATP levels. The small molecules provided protection from necrosis induced in the presence of zVAD-fmk, but not from apoptosis induced by FADD dimerization in the absence of zVAD-fmk. These results indicate that FADD may be involved in mediating necrosis in response to zVAD-fmk/TNFα- or zVAD-fmk/DMSO. It is possible that the small molecules that decrease necrosis may function by interacting with FADD and disrupting FADD's normal function of promoting necrosis upon treatment of a cell with zVAD-fmk/TNFα or zVAD-fmk/DMSO.
Example 23 Identification of Intracellular Targets of Small Molecules that Decrease NecrosisMolecules within a cell that interact with the small molecule compounds that decrease necrosis can be identified using a number of different strategies. Each strategy involves detecting interactions between various proteins from a cell and a small molecule that decreases necrosis, identified according to the methods described above. To identify proteins that interact with a small molecule that decreases necrosis, the small molecule may be bound to a bead, using methods known to those skilled in the art. Each strategy should be carried out using proteins from cells which have been exposed to zVAD-fmk/TNFα or zVAD-fmk/DMSO.
In one strategy, the signaling complex containing FADD, among other proteins, may be immunoprecipitated, using standard techniques known to those skilled in the art. This complex may then be added to the beads containing the desired small molecule compound that decreases necrosis. Proteins that interact with the small molecule that decreases necrosis may be identified by Western blot detection of proteins contained in the complex, or other techniques known to those skilled in the field of molecular biology. Any detected binding interactions indicate that the target of the small molecule that decreases necrosis is present in the immunoprecipitated FADD complex.
In a second strategy for identifying targets of a small molecule that decreases necrosis, a cell may be fractionated, and the various fractionated pools may be assayed for interaction with the chemical compound using standard molecular biology techniques. A pool of proteins which interacts with the small molecule that decreases necrosis indicates that the pool contains a protein that is a target of the small molecule that decreases necrosis. The target of the small molecule that decreases necrosis may be isolated using techniques known to those skilled in the art.
A third strategy involves small pool expression screening systems. Targets of a small molecule that decreases necrosis can be identified from any cell in which the small molecule protects cells from necrosis triggered by zVAD-fmk/TNFα or zVAD-fmk/DMSO. This method for identifying targets of small molecules that decrease necrosis can be done, for example, according to the methods of Lustig et al. (Methods in Enzymology 283:83-99, 1997). In this method a cDNA library is made from a desired cell line, or any other desired source. The cDNA library is then divided into pools of 100 clones, and the cDNAs are transcribed and translated to form proteins pools for the detection of interactions between a protein and a small molecule that decreases necrosis. Interactions between the small molecules that decrease necrosis and pools of library proteins can be detected using standard molecular biology techniques, for example, SDS-PAGE.
Example 24 Structural Derivatives of Small Molecules that Decrease NecrosisThe following modifications of the small molecules that decrease necrosis may be made and evaluated for their efficacy in decreasing necrosis, for example, that induced by zVAD-fmk/TNF.alpha. or zVAD-fmk/DMSO.
The chemical compound 115807 may be modified, for example, by the introduction of a hydroxyl, methyl, carboxy, methoxyl, amino or nitro group into the benzyl ring (for example, at any or all of the R1-R4 positions of formula (VII)). Double bonds may be introduced in the linker between indol and hydantoin moieties (for example, in formula (VII), bonds (a), (b), or (c) may be double bonds, provided that not both of bonds (a) and (b) are double bonds). The thiourea moiety may be reduced or alkylated (for example, the moiety may be —SH or SR8, wherein R8 is an alkyl group). The indol amino group may be reduced, alkylated, or acylated (for example, in formula (VII), R5 may be CH3, CH3(CH2)n, where n is between 1 and 4, and HOOC—(CH2)n, where n is between 1 and 4,
In addition, the hydantoin 3-methyl group may be substituted with linear or branching alkyl groups of varying length, and with hydroxyl, methyl, or acyl functionalities; for example, the following groups may be present at the R7 position of formula (VII); CH3, CH3(CH2)n, where n is between 1 and 4, OH, or HOOC—(CH2)n—, where n is between 1 and 4. In addition, the linker CH2 group between the indol and hydantoin moieties can be alkylated, acylated, halogenated, or hydroxylated; for example, in formula (VII), R7 may be CH3, CH3(CH2)n, where n is between 1 and 4, and HOOC—(CH2)n, where n is between 1 and 4,
Lastly, the hydantoin ketone moiety may be reduced to a hydroxyl group or a hydrogen.
The chemical compound 210227 may be modified, for example, by the attachment of a halide, or hydroxyl or amino groups to either or both of the benzyl rings (for example, in any of the positions R1-R2 or R4-R9 of formula (XX)). The C═N double bond may be reduced, or the fluoride may be eliminated or substituted with a hydroxyl group or other halide.
The chemical compound 215686 may be modified, for example, by reducing the two central aliphatic double bonds, together, or each one individually. The ketone may also be reduced, or the methoxyl groups may be substituted with hydroxyl groups, each individually, or together.
The chemical compound 115681 may be modified, for example, in the following ways. The aliphatic double bond or the aliphatic ketone may be reduced. The nitro group may be substituted with a proton, halide, or sulfate. The C═O double bond in the flavone ring may be reduced. Either one or two of the oxygens attached to the flavone may also be eliminated.
Example 25 Synthetic Scheme for Nec-2 CompoundsNec-2 compounds can be made by methods known in the art (see, e.g., Revue Roumaine de Chimie, 30:245-8, 1985; Indian Journal of Chemistry, Section B: Organic Chemistry Including Medicinal Chemistry, 42B:145-149, 2003; and Russian Journal of Organic Chemistry (Translation of Zhurnal Organicheskoi Khimii), 35:1516-1524, 1999). For example, Scheme 6 can be used:
If 4-hydroxy-3-nitrobenzaldehyde (available from Matrix Scientific or Wako Pure Chemicals) is used as a starting material, Nec-2 can be produced with the above scheme:
Three additional synthetic schemes that are useful for preparing Nec-2 compounds of the invention, in particular, compounds of formula (XVIII), are shown below in Scheme 7, 8, and 9:
A structure-activity relationship (SAR) study was carried out for a series of Nec-3 tricyclic compounds of formula (XXX) that inhibit tumor necrosis factor alpha (TNF- ) induced necroptosis.
Chemistry
Compounds of formula (XXX), such as 3-phenyl-3,3a,4,5-tetrahydro-2H-benz[g]indazoles (X═CH2), 3-phenyl-2,3,3a,4-tetrahydro[1]benzopyrano[4,3-c]pyrazoles (X═O) and 3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazoles (X═S), were prepared from 1-tetralones, 4-chromanones and 4-thiochromanones, respectively, according to the procedures outlined in Scheme 10. For example, compounds of formula (XXXI) (X═CH2, O or S) were condensed with aromatic aldehydes in the presence of sodium hydroxide to give chalcone compounds of formula (XXXII). In the cases of 7-nitro-1-tetralone and 7-methoxy-4-chromanone condensations with 4-anisaldehyde were accomplished under acidic conditions. Treatment of compounds of formula (XXXII) with hydrazine hydrate in acetic acid gave a mixture of readily separable diastereomers of formula (XXXIII) [i.e. (3R,3aS)-rel-isomer] and formula (XXXIV) [i.e. (3R,3aR)-rel-isomer. 5,5-Dioxo-3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazoles (X═SO2) compounds were prepared by oxidizing the corresponding 3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazoles of formula (XXXIII) and formula (XXXIV) with m-chloroperoxybenzoic acid (MCPBA).
The stereochemical assignments were confirmed using 1H-NMR, 1-D nOe and HH-COSY experiments. For example, compound (141) was assigned as the (3R,3aR)-rel-isomer due to an intense nOe between protons at the 3a-position (δ 3.47-3.55) and the 3-position (δ 5.66), and a large coupling constant (J=11.2 Hz). The (3R,3aS)-rel-isomer (142) had a weak nOe between the protons at the 3a-position (δ 3.16-3.23) and at the 3-position (δ 4.91), a smaller coupling constant (J=9.2 Hz) and the proton at the 3a-position (δ 3.20) was shielded by the 4′-methoxyphenyl ring compared to the corresponding proton in the (3R,3aR)-rel-isomer.
The 5-position of the 3,3a,4,5-tetrahydro-2H-benz[g]indazole ring system of (141) was modified as shown in Scheme 11. Introduction of an azide to this benzylic position utilizing Me3SiN3 in the presence of [bis(trifluoroacetoxy)iodo]-benzene was accomplished following the procedure of Kita et al. (Synlett 427-428, 1994) to give (143) in 29% yield. This reaction was also accompanied by an elimination reaction giving (144) in 31% yield. The azide (143) was subsequently reduced by hydrogenation to amine (145) and then converted to the tertiary amine (146) by reductive amination. The relative stereochemistry at the 5-position of (146) was established by 1H-NMR and HH-COSY experiments. The dimethylamine protons of (146) (δ 2.21) had an intense coupling interaction with the proton at the 3a-position (δ 4.03-4.09) indicative of a syn-relationship.
Derivatives with various substituents on the 2-position of the tricyclic ring were also prepared. Compounds (147) and (148) were synthesized according to Scheme 10, except that formic acid and propionic acid, respectively, were used as solvent in place of acetic acid. When chalcone (I-15) was allowed to react with hydrazine hydrate in the presence of trimethylacetic acid, as shown in Scheme 12, amine (149) was isolated as a mixture of diastereomers (the material was subsequently used without purification). Unlike the case with acetic acid, utilizing a sterically demanding acid like trimethylacetic acid prevented direct amide formation and allowed for the isolation of the amine. Treatment of (149) with various acid chlorides yielded compounds of formula (XXXV) and formula (XXXVI). Amide (151) was subsequently generated from (150) upon treatment with NaOH in methanol. Cyclization of (I-15) with various semicarbazides and thiosemicarbazides, as depicted in Scheme 12, gave compounds of formula (XXXVII) and formula (XXXVIII). For example, (152), (153) and (154) are all compounds generated by this cyclization method. In all cyclization reactions reported herein the (3R,3aR)-rel- and (3R,3aS)-rel-isomers were isolated following separation by column chromatography on silica gel. Compound (152) was subsequently converted to (157) by a sequence of reactions involving alkylation with MeI to give intermediate (156) followed by treatment with ammonia in ethanol (Scheme 13). Finally, compound (213) was prepared from (141) by reduction with lithium aluminum hydride.
Evaluation of necroptosis inhibitory activity was performed using a FADD-deficient variant of human Jurkat T cells treated with TNF-α as described herein. Utilizing these conditions, the cells efficiently underwent necroptosis, which was completely and selectively inhibited by Nec-1 (EC50=0.050 μM) as a positive control. For EC50 value determinations, cells were treated with 10 ng/mL of human TNF-α in the presence of increasing concentration of test compounds for 24 hours followed by ATP-based viability assessment. For several key derivatives, EC50 values were independently obtained in three separate experiments to verify accuracy and reproducibility. The EC50 values±the standard deviations are shown.
In five cases examined with the 3,3a,4,5-tetrahydro-2H-benz[g]indazole ring system, the (3R,3aR)-rel-isomers were more active than the corresponding (3R,3aS)-rel-isomers at inhibiting necroptosis (Table 7). For example, (141) was 28-times more potent than (142). In addition, introduction of the methoxy group at the 8-position of the tricyclic ring gave increased activity, e.g. (165) vs. (161) and (167) vs. (141).
Translocation of the methoxy group to the 6-, 7-, or 9-positions of the tricyclic ring, e.g. (173), (163) and (180), resulted in loss of activity. Increasing the size (181) or introduction of an amine onto the ether (183) at the 8-position of the tricyclic ring also resulted in diminished activity. An electron-withdrawing fluorine (171) was tolerated at the 8-position of the tricyclic ring. However, replacing the fluorine with a nitro group (169) diminished inhibitory activity. An electron-donating methoxy group on the 4′-position of the pendent phenyl ring resulted in increased activity compared to a fluorine or nitro substituent, e.g, (141) vs (161) and (172). However, increasing the size of the ether (174), transposition to the 2′-position (179), replacing it with a hydroxyl (175) or a thioether (182) was detrimental to activity to varying degrees. Introduction of a primary amine (145) or a tertiary amine (146) on the 5-position of the tricyclic ring also resulted in a significant (>10-fold) erosion of activity.
Replacing the 3,3a,4,5-tetrahydro-2H-benz[g]indazole ring with a 2,3,3a,4-tetrahydro-[1]-benzopyrano[4,3-c]pyrazole ring (Table 8) only resulted in a slight decrease in activity, e.g. (141) vs. (188) and (171) vs. (190). However, the difference in activities between the (3R,3aR)-rel- and (3R,3aS)-rel-isomers in some cases appeared to be more dramatic in the 2,3,3a,4-tetrahydro-[1]benzopyrano[4,3-c]pyrazole ring system, e.g. (189) vs. (190). The SAR of the pendent phenyl group appears to be comparable between the two ring systems. Replacing the 3,3a,4,5-tetrahydro-2H-benz[g]indazole ring with a 3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazole or a 5,5-dioxo-3-phenyl-2,3,3a,4-tetrahydro-[1]-benzothiopyrano[4,3-c]pyrazole ring resulted in a more significant decrease in activity, e.g. (141) vs. (192) and (194).
Next, the SAR of various nitrogen substituents on the 2-position of the 3,3a,4,5-tetrahydro-2H-benz[g]indazole ring was examined (Table 9). In general, amides were best with the ethyl, hydroxymethyl and trifluoromethyl amides, i.e. (148), (191) and (159) being most comparable to (141). Introduction of ureas or thioureas to the 2-position of the tricyclic ring were detrimental to activity. Likewise, replacing the amide with an alkyl group (213) resulted in complete loss of necroptosis inhibitory activity.
The tricyclic compounds 3-phenyl-3,3a,4,5-tetrahydro-2H-benz[g]indazoles and 3-phenyl-2,3,3a,4-tetrahydro-[1]-benzopyrano[4,3-c]pyrazoles were found to be potent necrostatins. A SAR study revealed that the (3R,3aR)-rel-diastereomers were more active then the corresponding (3R,3aS)-rel-diastereomers for both ring systems. Introduction of fluorine or methoxy to the 8-position of the tricyclic ring increased activity, while substitution at the 6, 7 and 9-positions were detrimental. Also, introduction of a methoxy group to the 4-position of the pendent phenyl ring increased activity, while placing the methoxy at the 2-position of the phenyl ring eliminated activity. Amides at the 2-position of the tricyclic ring systems were best. Furthermore, replacing the 3,3a,4,5-tetrahydro-2H-benz[g] indazole ring with a 3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazole or a 5,5-dioxo-3-phenyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazole ring resulted in a significant decrease in activity. Studies are currently underway to further evaluate these compounds in animal models of disease where necroptosis is likely to play a significant role (i.e., ischemic stroke). Moreover, these compounds can serve as molecular tools (i.e., infinity reagents) to further interrogate the mechanism(s) of necroptotic cell death.
Example 27 MethodsChemistry Material and Methods
NMR spectra were obtained using a Bruker 400 MHz, Varian 400 MHz, or 500 MHz spectrometer. All 1H NMR spectra are reported in δ units ppm and are reference to tetramethylsilane (TMS) if conducted in CDCl3, to the central line of the quintet at 3.30 ppm for samples in CD3OD, to the central line of the quintet at 2.49 ppm for samples in d6-DMSO. All 13C NMR spectra are reported in δ units ppm and are reference to the central line of the triplet at 77.23 ppm if conducted in CDCl3, to the central line of the septet at 49.0 ppm for samples in CD3OD, to the central line of the septet at 39.5 ppm for samples in d6-DMSO. Coupling constants (J values) are reported in Hz. Column chromatography was performed on silica gel (Merck, grade 60, 230-400 mesh) or utilizing a CombiFlash Sg 100c separation system (ISCO) with RediSep disposable silica gel columns (ISCO). High-resolution mass spectra were obtained by using a SX-102A mass spectrometer (JEOL USA, Inc., Peabody, Mass.) or a LCT mass spectrometer (Micromass Inc., Beverly, Mass.). All melting points were taken in glass capillary tubes on a MeI-Temp® apparatus and are uncorrected. The elemental compositions of the compounds agreed to within ±0.4% of the calculated values.
Preparation and Characterization of Compounds
General procedure for the synthesis of 2-arylidene-1-tetralones, 2-(arylidene)chroman-4-ones and 2-(arylidene)thiochroman-4-ones under basic conditions, exemplified for 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone: To a solution of 7-methoxy-1-tetralone (1.760 g, 0.01 mol) and 4-fluorobenzaldehyde (1.240 g, 0.01 mol) in ethanol (20 mL) was slowly added an aqueous solution of NaOH (0.012 mol, 8 N) at room temperature. The mixture was stirred for two hours. The solid precipitate was collected by filtration and then washed sequentially with ethanol, water, and again with ethanol. The solid was dried in vacuo to give 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone (2.485 g, 88%): mp 129-30° C., 1H NMR (500 MHz, CDCl3): δ 2.88-2.91 (m, 2H), 3.06-3.10 (m, 2H), 3.87 (s, 3H), 7.06-7.13 (m, 3H), 7.17 (d, J=8.4 Hz, 1H), 7.42 (d, J=5.2 Hz, 1H), 7.44 (d, J=5.6 Hz, 1H), 7.61 (d, J=3.2 Hz, 1H), 7.81 (s, 1H). HFABMS m/z 283.1134 (calc for C18H16FO2, MH+, 283.1134).
General procedure for the synthesis of 2-arylidene-1-tetralones and 2-(arylidene)chroman-4-ones under acidic conditions, exemplified for 2-(4-methoxybenzylidene)-7-nitro-1-tetralone: A mixture of 7-nitro-1-tetralone (0.382 g, 2.0 mmol), 4-methoxybenzaldehyde (0.243 mL, 2.0 mmol) and concentrated HCl (10 mL) in methanol (5.4 mL) was heated at reflux for four hours. The mixture was allowed to cool to room temperature and then filtered. The residue was washed with a small amount of methanol and dried in vacuo to give 2-(4-methoxybenzylidene)-7-nitro-1-tetralone (2.485 g, 88%) as a pale yellow solid: 1H NMR (500 MHz, CDCl3): δ 3.04-3.9 (m, 2H), 3.19-3.22 (m, 2H), 3.87 (s, 3H), 6.96-6.99 (m, 2H), 7.44-7.47 (m, 3H), 7.93 (s, 1H), 8.32 (dd, J1=8.5 Hz, J2=2.5 Hz, 1H), 8.94 (d, J=2.0 Hz, 1H). For characterization of other 2-arylidene-1-tetralones, 2-(arylidene)chroman-4-ones and 2-(arylidene)thiochroman-4-ones, see Example 28.
General procedure for the preparation of (3R,3aS)-rel- and (3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(aryl)-2H-benz[g]indazoles, 2-acetyl-2,3,3a,4-tetrahydro-[1]benzopyrano[4,3-c]pyrazoles and 2-acetyl-2,3,3a,4-tetrahydro-[1]benzothiopyrano[4,3-c]pyrazoles. Exemplified for (3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-8-methoxy-2H-benz[g]indazole (160) and (3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-8-methoxy-2H-benz[g]indazole (161): A solution of 2-(4-fluorobenzylidene)-7-methoxy-1-tetralone (0.300 g, 1.0 mmol), hydrazine hydrate (0.3 mL) in acetic acid (3 mL) was refluxed at 120° C. for 15 hours. The reaction mixture was concentrated and then dissolved in ethyl acetate. The organic layer was washed sequentially with water, saturated aqueous NaHCO3, water and brine, dried over anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified by silica gel column using ethyl acetate-hexane (3:7) to give (160) (0.051 g, 21%) and (161) (0.109 g, 45%). Yields were based on the recovery of starting material (95 mg).
(160): mp 165-67° C., 1H NMR (400 MHz, CDCl3): δ 1.94-1.99 (m, 1H), 2.29-2.31 (m, 1H), 2.32 (s, 3H), 2.40-2.42 (m, 2H), 3.16-3.22 (m, 1H), 3.89 (s, 3H), 4.95 (d, J=9.6 Hz, 1H), 6.93-6.96 (dd, J=2.8 and 8.4 Hz, 1H), 7.04-7.08 (t, J=8.8 Hz, 2H), 7.12 (d, J=8.4 Hz, 1H), 7.28-7.32 (m, 2H), 7.46 (d, J=2.4 Hz, 1H). Anal. (C20H19FN2O2) C, H, N.
(161): mp 182-85° C., 1H NMR (400 MHz, CDCl3): δ 1.02-1.06 (m, 1H), 1.75-1.78 (m, 1H), 2.48 (s, 3H), 2.81-2.87 (m, 2H), 3.54-3.57 (m, 1H), 3.90 (s, 3H), 5.72 (d, J=12.0 Hz, 1H), 6.93-7.11 (m, 6H), 7.56 (d, J=4.0 Hz, 1H). 13C NMR (400 MHz, CDCl3): δ 22.13, 24.50, 28.30, 48.77, 55.73, 62.61, 107.83, 112.70, 115.62, 118.72, 127.99, 128.21, 130.26, 132.25, 132.92, 155.79, 158.35, 161.13, 163.58, 168.72. Anal. (C20H19FN2O2) C, H, N.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-7-methoxy-2H-benz[g]indazole (162): yield 18%, mp 228-30° C., 1H NMR (400 MHz, CDCl3): δ 1.89-2.00 (m, 1H), 2.24-2.30 (m, 1H), 2.38 (s, 3H), 2.88-2.94 (m, 2H), 3.12-3.19 (m, 1H), 3.83 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.68 (d, J=2.4 Hz, 1H), 6.83-6.85 (dd, J=2.4 and 8.4 Hz, 1H), 7.00-7.06 (m, 2H), 7.26-7.29 (m, 2H), 7.90 (d, J=8.8 Hz, 1H). Anal. (C20H19FN2O2) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-7-methoxy-2H-benz[g]indazole (163): yield 20%, 1H NMR (400 MHz, CDCl3): δ 1.00-1.07 (m, 1H), 1.74-1.76 (m, 1H), 2.42 (s, 3H), 2.76-2.89 (m, 2H), 3.49-3.56 (m, 1H), 3.81 (s, 3H), 5.67 (d, J=10.8 Hz, 1H), 6.65 (s, 1H), 6.83-6.85 (dd, J=6.0 and 2.4 Hz, 1H), 6.94-7.06 (m, 4H), 7.99 (d, J=9.2 Hz, 1H). Anal. (C20H19FN2O2) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-7,8-dimethoxy-2H-benz[g]indazole (164): yield 33%, mp 189-93° C., 1H NMR (400 MHz, CDCl3): δ 1.01-1.08 (m, 1H), 1.72-1.77 (m, 1H), 1.44 (s, 3H), 2.72-2.93 (m, 2H), 3.48-3.55 (m, 1H), 3.88 (s, 3H), 3.95 (s, 3H), 5.67 (d, J=10.8 Hz, 1H), 6.60 (s, 1H), 6.94-6.99 (dd, J=9.2 and 8.8 Hz, 2H), 7.04-7.07 (m, 2H), 7.47 (s, 1H). Anal. (C21H21FN2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-2H-benz[g]indazole (165): yield 23%, mp 166-68° C., 1H NMR (400 MHz, CDCl3): δ 1.06-1.11 (m, 1H), 1.77-1.81 (m, 1H), 2.47 (s, 3H), 2.87-2.95 (m, 2H), 3.56-3.63 (m, 1H), 5.72 (d, J=12.0 Hz, 1H), 7.00 (t, J=8.0 Hz, 2H), 7.06-7.10 (m, 2H), 7.19 (d, J=8.0 Hz, 1H), 7.28-7.36 (m, 2H), 8.09 (d, J=8.0 Hz, 1H). Anal. (C19H17FN2O) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3-fluorophenyl)-8-methoxy-2H-benz[g]indazole (166): yield 39%, mp 176-77° C., 1H NMR (400 MHz, CDCl3): δ1.00-1.08 (m, 1H), 1.75-1.80 (m, 1H), 2.46 (s, 3H), 2.75-2.83 (m, 2H), 3.52-3.60 (m, 1H), 3.87 (s, 3H), 5.69 (d, J=11.2 Hz, 1H), 7.76-6.79 (dd, J=2.4 and 9.6 Hz, 1H), 6.86-6.95 (m, 3H), 7.06 (d, J=8.8 Hz, 1H), 7.23-7.28 (m, 1H), 7.53 (d, J=3.2 Hz, 1H). 13C NMR (400 MHz, CDCl3): δ 22.18, 24.54, 28.97, 46.79, 55.75, 62.97, 107.18, 113.16, 114.65, 118.71, 121.92, 128.05, 130.27, 132.13, 139.57, 155.62, 156.22, 161.60, 164.24, 168.50. Anal. (C20H19FN2O2) C, H, N.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (142): yield 25%, mp 146-48° C., 1H NMR (400 MHz, CDCl3): δ 1.89-1.95 (m, 1H), 2.25-2.29 (m, 1H), 2.39 (s, 3H), 2.85-2.87 (m, 2H), 3.16-3.23 (m, 1H), 3.79 (s, 3H), 3.86 (s, 3H), 4.91 (d, J=9.2 Hz, 1H), 6.87-6.93 (m, 3H), 7.09 (d, J=8.4 Hz, 1H), 7.22-7.25 (m, 2H), 7.44 (d, J=2.4 Hz, 1H). Anal. (C21H22N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (141): yield 30%, mp 151-53° C., 1H NMR (400 MHz, CDCl3): δ 1.03-1.11 (m, 1H), 1.72-1.76 (m, 1H), 2.44 (s, 3H), 2.77-2.91 (m, 2H), 3.47-3.55 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.66 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.8 Hz, 2H), 6.89-6.92 (dd, J=3.2 and 8.8 Hz, 1H), 6.99 (d, J=8.4 Hz, 2H), 7.06 (d, J=8.4 Hz, 1H), 7.54 (d, J=2.8 Hz, 1H).). 13C NMR (400 MHz, CDCl3): δ 22.15, 24.42, 28.93, 48.84, 55.42, 55.70, 63.03, 107.76, 112.66, 114.15, 118.56, 127.44, 127.88, 128.39, 129.26, 130.24, 132.32, 155.60, 158.28, 159.14, 168.56. Anal. (C21H22N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-2H-benz[g]indazole (167): yield 30%, mp 257-60° C., 1H NMR (400 MHz, CDCl3): δ 1.01-1.11 (m, 1H), 1.70-1.75 (m, 1H), 2.40 (s, 3H), 2.76-2.89 (m, 2H), 3.47-3.54 (m, 1H), 3.71 (s, 3H), 5.63 (d, J=11.2 Hz, 1H), 6.76 (d, J=8.4 Hz, 2H), 6.96 (d, J=8.8 Hz, 2H), 7.11 (d, J=6.8 Hz, 1H), 7.23-7.29 (m, 2H), 8.02-8.04 (dd, J=1.6 and 7.6 Hz, 1H). Anal. (C20H20N2O2) C, H, N.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-nitro-2H-benz[g]indazole (168): yield 25%, 1H NMR (500 MHz, CDCl3): δ 1.94-2.05 (m, 1H), 2.34-2.38 (m, 1H), 2.42 (s, 3H), 2.97-3.09 (m, 2H), 3.23-3.29 (m, 1H), 3.71 (s, 3H), 4.98 (d, J=9.5 Hz, 1H), 6.90 (d, J=9.0 Hz, 2H), 7.24 (d, J=7.0 Hz, 2H), 7.36 (d, J=8.5 Hz, 1H), 8.14 (dd, J=8.5 and 2.5 Hz, 1H), 8.79 (d, J=2.0 Hz, 1H). HFABMS m/z 366.1467 (calc for C20H20N3O4, MH+, 366.1454).
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-nitro-2H-benz[g]indazole (169): yield 45%, 1H NMR (500 MHz, CDCl3): δ 1.07-1.16 (m, 1H), 1.81-1.86 (m, 1H), 2.47 (s, 3H), 2.95-2.97 (m, 2H), 3.56-3.62 (m, 1H), 3.76 (s, 3H), 5.72 (d, J=11.5 Hz, 1H), 6.82 (d, J=9.0 Hz, 2H), 6.97 (d, J=8.5 Hz, 2H), 7.33 (d, J=8.5 Hz, 1H), 8.13 (dd, J=8.5 and 2.5 Hz, 1H), 8.89 (d, J=2.5 Hz, 1H). HFABMS m/z 366.1467 (calc for C20H20N3O4, MH+, 366.1454).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-fluoro-2H-benz[g]indazole (170): Required a second silica gel column chromatography purification using 2% MeOH in CH2Cl2; yield 26%, 1H NMR (500 MHz, CDCl3): δ 1.89-1.99 (m, 1H), 2.27-2.32 (m, 1H), 2.38 (s, 3H), 2.85-2.95 (m, 2H), 3.18-3.24 (m, 1H), 3.70 (s, 3H), 4.92 (d, J=9.0 Hz, 1H), 6.88-6.91 (m, 2H), 7.01-7.05 (m, 1H), 7.14-7.16 (m, 1H), 7.23-7.25 (m, 2H), 7.63 (dd, J=9.5 and 2.5 Hz, 1H). HFABMS m/z 339.1523 (calc for C20H20FN2O2, MH+, 339.1509).
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-fluoro-2H-benz[g]indazole (171): yield 29%, 1H NMR (500 MHz, CDCl3): δ 1.03-1.12 (m, 1H), 1.74-1.79 (m, 1H), 2.44 (s, 3H), 2.78-2.89 (m, 2H), 3.49-3.55 (m, 1H), 3.76 (s, 3H), 5.67 (d, J=11.0 Hz, 1H), 6.81 (d, J=9.0 Hz, 2H), 6.97-7.04 (m, 3H), 7.11-7.13 (m, 1H), 7.72 (dd, J=9.5 and 3.0 Hz, 1H). HFABMS m/z 339.1493 (calc for C20H20FN2O2, MH+, 339.1509).
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-nitroxyphenyl)-8-methoxy-2H-benz[g]indazole (172): yield 29%, mp 219-21° C., 1H NMR (400 MHz, CDCl3): δ 0.91-1.01 (m, 1H), 1.71-1.75 (m, 1H), 2.43 (s, 3H), 2.75-2.82 (m, 2H), 3.57-3.64 (m, 1H), 3.84 (s, 3H), 5.74 (d, J=11.6 Hz, 1H), 6.88-6.91 (dd, J=3.2 and 8.4 Hz, 1H), 7.22 (d, J=9.6 Hz, 2H), 7.48 (d, J=3.2 Hz, 1H), 8.13 (d, J=9.6 Hz, 2H). Anal. (C20H19N3O4) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-6-methoxy-2H-benz[g]indazole (173): yield 43%, mp 203-207° C., 1H NMR (500 MHz, CDCl3): δ 0.98-1.07 (m, 1H), 1.74-1.79 (m, 1H), 2.43 (s, 3H), 2.45-2.52 (m, 1H), 3.04-3.09 (m, 1H), 3.48-3.54 (m, 1H), 3.76 (s, 3H), 3.82 (s, 3H), 5.68 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.86 (d, J=8.0 Hz, 1H), 7.00 (d, J=8.5 Hz, 2H), 7.24 (t, J=8.0 Hz, 1H), 7.68 (d, J=8.0 Hz, 1H).). Anal. (C21H22N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-benzyloxyphenyl)-8-methoxy-2H-benz[g]indazole (174): yield 41%, mp 156-61° C., 1H NMR (400 MHz, CDCl3): δ 1.01-1.14 (m, 1H), 1.72-1.79 (m, 1H), 2.45 (s, 3H), 2.75-2.83 (m, 2H), 3.87 (s, 3H), 4.99 (s, 2H), 5.67 (d, J=10.8 Hz, 1H), 6.87-6.92 (m, 2H), 6.99 (d, J=8.4 Hz, 1H), 7.06 (d, J=8.8 Hz, 1H), 7.30-7.40 (m, 7H), 7.54 (d, J=3.2 Hz, 1H). Anal. (C27H26N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3,4-methylenedioxyphenyl)-8-methoxy-2H-benz[g]indazole (177): yield 41%, mp 206-209° C., 1H NMR (500 MHz, CDCl3): δ 1.08-1.17 (m, 1H), 1.75-1.80 (m, 1H), 2.42 (s, 3H), 2.76-2.84 (m, 2H), 3.47-3.53 (m, 1H), 3.87 (s, 3H), 5.62 (d, J=11.4 Hz, 1H), 5.90 (s, 2H), 6.52 (d, J=1.5 Hz, 1H), 6.57-6.59 (dd, J=1.5 and 8.0 Hz, 1H), 6.72 (d, J=7.5 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 7.07 (d, J=8.2 Hz, 1H), 7.52 (d, J=2.5 Hz, 1H). Anal. (C21H20N2O4) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3,4-ethylenedioxyphenyl)-8-methoxy-2H-benz[g]indazole (178): yield 17%, mp 189-93° C., 1H NMR (500 MHz, CDCl3): δ1.06-1.15 (m, 1H), 1.78-1.80 (m, 1H), 2.41 (s, 3H), 2.75-2.86 (m, 2H), 3.46-3.52 (m, 1H), 3.87 (s, 3H), 4.22 (s, 4H), 5.60 (d, J=11.5 Hz, 1H), 6.55-6.58 (m, 2H), 6.76 (d, J=8.5 Hz, 1H), 6.89-6.91 (dd, J=3.0 and 9.0 Hz, 1H), 7.06 (d, J=8.0 Hz, 1H), 7.52 (d, J=3.0 Hz, 1H). Anal. (C22H22N2O4) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-9-methoxy-2H-benz[g]indazole (180): yield 27%, mp 157-60° C., 1H NMR (500 MHz, CDCl3): δ1.09-1.18 (m, 1H), 1.67-1.72 (m, 1H), 2.49 (s, 3H), 2.83-2.95 (m, 2H), 3.53-3.59 (m, 1H), 3.78 (s, 3H), 3.98 (s, 3H), 5.57 (d, J=11.0 Hz, 1H), 6.77 (d, J=7.0 Hz, 1H), 6.80 (d, J=9.0 Hz, 2H), 6.84 (d, J=9.0 Hz, 1H), 7.04 (d, J=9.0 Hz, 2H), 7.25 (t, J=9.0 Hz, 1H).). Anal. (C21H22N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-benzyloxy-2H-benz[g]indazole (181): yield 36%, mp 155-57° C., 1H NMR (500 MHz, CDCl3): δ 1.03-1.12 (m, 1H), 1.72-1.77 (m, 1H), 2.44 (s, 3H), 2.74-2.86 (m, 2H), 3.48-3.54 (m, 1H), 3.75 (s, 3H), 5.12 (s, 2H), 5.66 (d, J=10.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.96 (d, J=3.0 Hz, 1H), 6.99 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.0 Hz, 2H), 7.33-7.47 (m, 4H), 7.64 (d, J=3.0 Hz, 1H). Anal. (C27H26N2O3) C, H, N.
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-thiomethoxyphenyl)-8-methoxy-2H-benz[g]indazole (182): yield 22%, mp 144-47° C., 1H NMR (500 MHz, CDCl3): δ 1.02-1.09 (m, 1H), 1.73-1.76 (m, 1H), 2.43 (s, 3H), 2.45 (s, 3H), 2.74-2.86 (m, 2H), 3.50-3.56 (m, 1H), 3.87 (s, 3H), 5.66 (d, J=10.5 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 8.5 Hz, 1H), 6.99 (d, J=8.5 Hz, 2H), 7.06 (d, J=8.5 Hz, 1H), 7.16 (d, J=8.5 Hz, 2H), 7.53 (d, J=3.0 Hz, 1H). Anal. (C21H22N2O2S) C, H, N.
(3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-fluorophenyl)-8-methyl-[1]benzopyrano[4,3-c]pyrazole (184): yield 15%, mp 218-20° C., 1H NMR (400 MHz, CDCl3): δ 2.36 (s, 3H), 2.42 (s, 3H), 3.53-3.57 (m, 1H), 4.13-4.19 (m, 1H), 4.60-4.64 (m, 1H), 4.99 (d, J=8 Hz, 1H), 6.85 (d, J=8 Hz, 1H), 7.05-7.09 (m, 2H), 7.16-7.31 (m, 3H), 7.63 (s, 1H). HFABMS m/z 325.1354 (calc for C19H17FN2O2, MH+, 325.1352).
(3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-(4-morpholino)ethoxy-2H-benz[g]indazole (183): yield 33%, mp 122-26° C., 1H NMR (500 MHz, CDCl3): δ 1.02-1.11 (m, 1H), 1.72 (m, 1H), 2.44 (s, 3H), 2.60 (t, J=4.5 Hz, 4H), 2.76-2.84 (m, 4H), 3.48-3.54 (m, 1H), 3.74-3.79 (m, 7H), 4.16-4.19 (m, 2H), 5.66 (d, J=10.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.90-6.93 (dd, J=3.0 and 9.0 Hz, 1H), 6.99 (d, H=8.5 Hz, 2H), 7.06 (d, J=9.0 Hz, 1H), 7.55 (d, J=3.0 Hz, 1H). HFABMS m/z 450.2391 (calc for C26H31N3O4, MH+, 450.2393).
(3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-fluorophenyl)-8-methyl-[1]benzopyrano[4,3-c]pyrazole (185): Required a second silica gel column chromatography purification using hexane/EtOAc/MeCN (65:25:10); yield 42%, mp 243-46° C., 1H NMR (400 MHz, CDCl3): δ 2.36 (s, 3H), 2.48 (s, 3H), 3.29 (t, J=12 Hz, 1H), 3.72-3.83 (m, 1H), 4.14-4.18 (m, 1H), 5.77 (d, J=12 Hz, 1H), 6.82 (d, J=8 Hz, 1H), 7.0-7.15 (m, 5H), 7.78 (s, 1H). HFABMS m/z 325.1359 (calc for C19H17FN2O2, MH+, 325.1352).
(3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-fluorophenyl)-8-methoxy-[1]benzopyrano[4,3-c]pyrazole (186): yield 32%, mp 245° C. 1H NMR (500 MHz, CDCl3): δ 2.45 (s, 3H), 3.21-3.27 (m, 1H), 3.84 (s, 3H), 3.82-3.87 (m, 1H), 4.10-4.14 (dd, J=10.5 and 12.5 Hz, 1H), 4.55-4.59 (dd, J=6.0 and 10.5 Hz, 1H), 5.75 (d, J=10.5 Hz, 1H), 6.82 (d, J=9.0 Hz, 1H), 6.91-6.94 (dd, J=3.5 and 9.5 Hz, 1H), 6.98-7.01 (dd, J=8.5 and 8.5 Hz, 2H), 7.06-7.08 (m, 2H). 7.33 (d, J=3.5 Hz, 1H). HFABMS m/z 341.1304 (calc for C19H17FN2O3, MH+, 341.1301).
(3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-[1]benzopyrano[4,3-c]pyrazole (187): yield 39%, 1H NMR (500 MHz, CDCl3): δ2.39 (s, 3H), 3.53-3.59 (m, 1H), 3.80 (s, 3H), 3.84 (s, 3H), 4.11 (dd, 1H, J=10.3, 12.8 Hz), 4.57 (dd, 1H, J=6.0, 10.5 Hz), 4.95 (d, 1H, J=10.0 Hz), 6.86 (d, 1H, J=9.0 Hz), 6.88-6.91 (m, 2H), 6.93 (dd, 1H, J=2.8, 9.3 Hz), 7.21-7.24 (m, 2H), 7.26-7.27 (m, 1H). HFABMS m/z 353.1485 (calc for C20H21N2O4, MH+, 353.1501).
(3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-[1]benzopyrano[4,3-c]pyrazole (188): yield 50%, 1H NMR (500 MHz, CDCl3): δ2.45 (s, 3H), 3.30 (dd, 1H, J=11.0, 13.0 Hz), 3.76 (s, 3H), 3.78-3.83 (m, 1H), 3.85 (s, 3H), 4.13 (dd, 1H, J=5.8, 10.8 Hz), 5.72 (d, 1H, J=11.0 Hz), 6.81-6.84 (m, 3H), 6.91 (dd, 1H, J=3.0, 9.5 Hz), 7.00-7.02 (m, 2H), 7.34 (d, 1H, J=3.5 Hz). HFABMS m/z 353.1492 (calc for C20H21N2O4, MH+, 353.1501).
(3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-fluoro-[1]benzopyrano[4,3-c]pyrazole (189): yield 33%, 1H NMR (500 MHz, CDCl3): δ2.38 (s, 3H), 3.53-3.59 (m, 1H), 3.80 (s, 3H), 4.13 (dd, 1H, J=10.3, 12.8 Hz), 4.60 (dd, 1H, J=5.8, 10.3 Hz), 4.97 (d, 1H, J=9.5 Hz), 6.87-6.91 (m, 3H), 7.02-7.06 (m, 1H), 7.21-7.24 (m, 2H), 7.49 (dd, 1H, J=3.0, 8.0 Hz). HFABMS m/z 341.1312 (calc for C19H18FN2O3, MH+, 341.1301).
(3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-fluoro-[1]benzopyrano[4,3-c]pyrazole (190): yield 53%, 1H NMR (500 MHz, CDCl3): δ2.44 (s, 3H), 3.31 (dd, 1H, J=11.0, 13.0 Hz), 3.76 (s, 3H), 3.78-3.84 (m, 1H), 4.16 (dd, 1H, J=5.8, 11.3 Hz), 5.73 (d, 1H, J=11.0 Hz), 6.82-6.86 (m, 3H), 6.98-7.05 (m, 3H), 7.57 (dd, 1H, J=3.0, 8.5 Hz). HFABMS m/z 341.1310 (calc for C19H18FN2O3, MH+, 341.1301).
(3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-[1]benzothiopyrano[4,3-c]pyrazole (191): yield 36%, 1H NMR (500 MHz, CDCl3): δ2.39 (s, 3H), 3.07 (dd, 1H, J=4.5, 12.3 Hz), 3.33 (dd, 1H, J=12.3 Hz), 3.57-3.62 (m, 1H), 3.79 (s, 3H), 3.86 (s, 3H),), 5.02 (d, 1H, J=8.5 Hz), 6.87-6.90 (m, 2H), 7.09 (d, 1H, J=9.0 Hz), 7.20-7.23 (m, 2H), 7.52 (d, 1H, J=3.0 Hz). HFABMS m/z 369.1273 (calc for C20H21N2O3S, MH+, 369.1273).
(3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-[1]benzothiopyrano[4,3-c]pyrazole (192): yield 52%, 1H NMR (500 MHz, CDCl3): δ2.41-2.51 (m, 2H), 2.45 (s, 3H), 3.77 (s, 3H), 3.86 (s, 3H), 3.89-3.95 (m, 1H), 5.67 (d, 1H, J=11.0 Hz), 6.83-6.85 (m, 2H), 6.88 (dd, 1H, J=3.0, 8.8 Hz), 7.00-7.03 (m, 2H), 7.09 (d, 1H, J=9.0 Hz), 7.65 (d, 1H, J=3.0 Hz). HFABMS m/z 369.1267 (calc for C20H21N2O3S, MH+, 369.1273).
Preparation of (3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-hydroxyphenyl)-8-methoxy-2H-benz[g]indazole (175): A mixture of (174) (0.370 mg, 0.86 mmol) and 5% Pd—C (10 mg) in ethyl acetate (20 mL) was stirred under a hydrogen atmosphere for 20 h and then filtered though the pad of celite. The celite was then washed sequentially with ethyl acetate and acetic acid. The combined filtrates were concentrated. The solid obtained was recrystallized from ethyl acetate to give (175) (0.185 g, 63%): mp 240-41° C., 1H NMR (400 MHz, d6-DMSO-CDCl3): δ 0.99-1.11 (m, 1H), 1.72-1.76 (m, 1H), 2.43 (s, 3H), 2.67-2.83 (m, 2H), 3.46-3.53 (m, 1H), 3.87 (s, 3H), 5.61 (d, J=10.8 Hz, 1H), 6.74 (d, J=8.4 Hz, 2H), 6.87 (d, J=8.8 Hz, 2H), 6.61 (m, 1H), 7.07 (d, J=8.4 Hz, 1H), 7.43-7.46 (m, 1H), 7.52 (d, J=3.2 Hz, 1H). Anal. (C20H20N2O3) C, H, N.
Preparation of (3R,3aR)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-hydroxyphenyl)-8-hydroxy-2H-benz[g]indazole (176): To a solution of (175) (0.100 g, 0.28 mmol) under an argon atmosphere in dichloromethane (5 mL) was added BBr3 (1.0 mL, 1.0 M solution in dichloromethane) at −78° C. The reaction mixture was stirred at room temperature for 1 h and then poured into an ice cold solution of HCl (1.0 N). The mixture was extracted in ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The solid obtained was recrystallized from ethyl acetate to give (176): (62 mg, 67%): mp 164-67° C., 1H NMR (400 MHz, DMSO-CDCl3): δ 0.70-0.90 (m, 1H), 1.41-1.46 (m, 1H), 2.41-2.57 (m, 5H), 3.15-3.22 (m, 1H), 5.29 (d, J=11.2 Hz, 1H), 6.43 (d, J=6.8 Hz, 2H), 6.53-6.57 (m, 3H), 6.68 (d, J=8.4 Hz, 1H), 7.19 (s, 1H). HFABMS m/z 323.1399 (calc for C19H18N2O3, MH+, 323.1396).
Preparation of (3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-5,5-dioxo-8-methoxy-[1]benzothiopyrano[4,3-c]pyrazole (193) and (3R,3aR)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-methoxyphenyl)-5,5-dioxo-8-methoxy-[1]benzothiopyrano[4,3-c]pyrazole (194): A solution of (191) (21 mg, 0.057 mmol) in dichloromethane (5 mL) at 0° C. was treated with MCPBA (60 mg). The reaction mixture was stirred at room temperature for 16 h and then diluted with ethyl acetate (50 mL), washed sequentially with saturated NaHCO3 and brine, and dried over anhydrous sodium sulfate, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (2:3) as eluent to give (193) (96%) as a white solid. (194) (92%) was prepared in a similar manner from (192).
(193): 1H NMR (500 MHz, CDCl3): δ2.41 (s, 3H), 3.54-3.62 (m, 2H), 3.81 (s, 3H), 3.95 (s, 3H), 4.09-4.15 (m, 1H), 5.03 (d, 1H, J=10.5 Hz), 6.89-6.92 (m, 2H), 7.14 (dd, 1H, J=2.3, 8.8), 7.21-7.24 (m, 2H), 7.56 (d, 1H, J=2.5 Hz), 7.88 (d, 1H, J=9.0 Hz). HFABMS m/z 401.1159 (calc for C20H21N2O5S, MH+, 401.1171).
(194): 1H NMR (500 MHz, CDCl3): δ2.48 (s, 3H), 2.68 (dd, 1H, J=13.8 Hz), 3.11 (dd, 1H, J=4.3, 13.8 Hz), 3.77 (s, 3H), 3.95 (s, 3H), 4.40-4.46 (m, 1H), 5.80 (d, 1H, J=11.5 Hz), 6.84-6.86 (m, 2H), 6.96-6.98 (m, 2H), 7.14 (dd, 1H, J=3.0, 9.0 Hz), 7.64 (d, 1H, J=2.5 Hz), 7.86 (d, 1H, J=9.5 Hz). HFABMS m/z 401.1160 (calc for C20H21N2O5S, MH+, 401.1171).
Preparation of (3R,3aS)-rel-2-formyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g] indazole (195) and (3R,3aR)-rel-2-formyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (147): A solution of 2-(4-methoxybenzylidene)-7-methoxy-1-tetralone (2.0 g, 0.0068 mol), hydrazine hydrate (2.0 mL) in formic acid (20 mL) was heated at 120° C. for 2 days. The reaction mixture was concentrated and then extracted with ethyl acetate. The organic layer was washed sequentially with water, saturated aqueous NaHCO3, water and brine, dried over anhydrous Na2SO4, filtered and then concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to give compounds (195) (0.740 g, 32%) and (147) (0.905 g, 40%).
(195): mp 166-68° C., 1H NMR (400 MHz, CDCl3): δ1.90-1.99 (m, 1H), 2.27-2.31 (m, 1H), 2.86-2.90 (m, 2H), 3.21-3.28 (m, 1H), 3.80 (s, 3H), 3.86 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.90-6.98 (m, 3H), 7.10 (d, J=8.8 Hz, 1H), 7.25-7.27 (m, 2H), 7.43 (d, J=2.4 Hz, 1H), 8.97 (s, 1H). Anal. (C20H20N2O3) C, H, N.
(147): mp 155-59° C., 1H NMR (400 MHz, CDCl3): δ 1.01-1.12 (m, 1H), 1.69-1.74 (m, 1H), 2.68-2.85 (m, 2H), 3.49-3.76 (m, 1H), 3.76 (s, 3H), 3.81 (s, 3H), 5.58 (d, J=11.2 Hz, 1H), 6.78-7.04 (m, 6H), 7.48 (d, J=3.2 Hz, 1H), 8.94 (s, 1H). Anal. (C20H20N2O3) C, H, N.
Preparation of (3R,3aS)-rel-2-propionyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (196) and (3R,3aR)-rel-2-propionyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (148): A solution of 2-(4-methoxybenzylidene)-7-methoxy-1-tetralone (0.500 g, 1.7 mmol) and hydrazine hydrate (0.5 mL) in propionic acid (5 mL) was refluxed at 140° C. for 2 days. The reaction mixture was concentrated and the residue dissolved in ethyl acetate (25 mL). The mixture was washed sequentially with water, saturated aqueous NaHCO3 and water, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (3:7) as eluent to give (196) (0.217 g, 35%) and (148) (0.252 g, 41%).
(196): mp 133-36° C., 1H NMR (400 MHz, CDCl3): δ1.15 (t, J=7.6 Hz, 3H), 1.85-1.96 (m, 1H), 2.23-2.29 (m, 1H), 2.74-2.87 (m, 4H), 3.15-3.22 (m, 1H), 3.78 (s, 3H), 3.86 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.87-6.92 (m, 3H), 7.08 (d, J=8.4 Hz, 1H), 7.23 (d, J=8.8 Hz, 2H), 7.44 (d, J=2.4 Hz, 1H). Anal. (C22H24N2O3) C, H, N.
(148): mp 150-52° C., 1H NMR (400 MHz, CDCl3): δ 1.05-1.10 (m, 1H), 1.21 (t, J=8.0 Hz, 3H), 1.70-1.78 (m, 1H), 2.74-2.88 (m, 4H), 3.47-3.52 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.65 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.4 Hz, 2H), 6.89-6.92 (dd, J=3.2 and 8.4 Hz, 1H), 6.98 (d, J=8.8 Hz, 2H), 7.06 (d, J=8.4 Hz, 1H), 7.54 (d, J=3.2 Hz, 1H). Anal. (C22H24N2O3) C, H, N.
General procedure for the preparation of 2-substituted (3R,3aS)-rel- and (3R,3aR)-rel-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazoles. Exemplified for (3R,3aS)-rel-2-acetoxyacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (197) and (3R,3aR)-rel-2-acetoxyacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (150): A solution of 2-(4-methoxybenzylidene)-1-tetralone (1.0 g, 3.4 mmol), trimethylacetic acid (5.0 g), hydrazine hydrate (1.0 mL) in ethanol (5 mL) was refluxed for 6 h and then concentrated. The residue obtained was dissolved in ethyl acetate (10 mL) and then washed with water. The organic layer was slowly poured into a saturated NaHCO3 solution (10 mL). The resulting solution was slowly treated with acetoxyacetyl chloride (1.83 mL, 17 mmol). The mixture was stirred at room temperature for 30 min. The ethyl acetate layer was separated, washed sequentially with water and brine, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel column using ethyl acetate-hexane (2:3) as eluent to give compounds (197) (11%) and (150) (68%).
(197): mp 159-61° C., 1H NMR (400 MHz, CDCl3): δ1.87-1.98 (m, 1H), 2.13 (s, 3H), 2.26-2.31 (m, 1H), 2.86-2.89 (m, 2H), 3.17-3.24 (m, 1H), 3.78 (s, 3H), 3.86 (s, 3H), 4.90 (d, J=9.2 Hz, 1H), 5.09 (d, J=15.6 Hz, 1H), 5.22 (d, J=15.6 Hz, 1H), 6.87-6.95 (m, 3H), 7.10 (d, J=8.8 Hz, 1H), 7.24 (d, J=8.8 Hz, 2H), 7.41 (d, J=3.2 Hz, 1H). Anal. (C23H24N2O5) C, H, N.
(150): mp 201-204° C., 1H NMR (400 MHz, CDCl3): δ 1.05-1.16 (m, 1H), 1.73-1.77 (m, 1H), 2.16 (s, 3H), 2.72-2.89 (m, 2H), 3.48-3.55 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 5.16-5.25 (m, 2H), 5.64 (d, J=11.2 Hz, 1H), 6.80 (d, J=8.8 Hz, 2H), 6.91-6.94 (dd, J=2.0 and 8.4 Hz, 1H), 6.99 (d, J=8.8 Hz, 2H), 7.07 (d, J=7.49 (d, J=3.2 Hz, 1H). Anal. (C23H24N2O5) C, H, N.
(3R,3aR)-rel-2-methoxyacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (158): yield 16%, mp 157-59° C., 1H NMR (500 MHz, CDCl3): δ1.06-1.12 (m, 1H), 1.75-1.77 (m, 1H), 2.76-2.88 (m, 2H), 3.46-3.50 (m, 1H), 3.51 (s, 3H), 3.75 (s, 3H), 3.87 (s, 3H), 4.54 (d, J=16.0 Hz, 1H), 4.66 (d, J=16.0 Hz, 1H), 5.68 (d, J=11.0 Hz, 1H), 6.80 (d, J=9.5 Hz, 2H), 6.91-6.93 (dd, J=3.0 and 9.0 Hz, 1H), 6.98 (d, J=9.5 Hz, 2H), 7.07 (d, J=8.0 Hz, 1H), 7.50 (d, J=3.0 Hz, 1H). HFABMS m/z 381.1810 (calc for C22H24N2O4, MH+, 381.1814).
(3R,3aR)-rel-2-trifluoroacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (159): yield 22%, mp 220-22° C., 1H NMR (500 MHz, CDCl3): δ 1.09-1.18 (m, 1H), 1.75-1.80 (m, 1H), 2.77-2.89 (m, 2H), 3.53-3.59 (m, 1H), 3.76 (s, 3H), 3.87 (s, 3H), 5.68 (d, J=10 Hz, 1H), 6.84 (d, J=8.5 Hz, 2H), 6.94-6.97 (dd, J=3.0 and 8.5 Hz, 1H), 7.01 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.5 Hz, 1H), 7.56 (d, J=3.0 Hz, 1H). HFABMS m/z 405.1432 (calc for C21H19F3N2O3, MH+, 405.1426).
Preparation of (3R,3aR)-rel-2-hydroxyacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (151): To a solution 150 (0.150 g, 0.36 mmol) in methanol (10 mL) was added NaOH (50%, 2 mL) at room temperature. The reaction mixture was stirred at room temperature for 24 h before being diluted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue obtained was purified by column chromatography on silica gel column using ethyl acetate-hexane (2:3) as eluent to furnish (151) (0.105 g, 78%): mp 163-64° C., 1H NMR (400 MHz, CDCl3): δ 1.06-1.17 (m, 1H), 1.72-1.78 (m, 1H), 2.76-2.89 (m, 2H), 3.76 (s, 3H), 3.87 (s, 3H), 4.55-7.70 (m, 2H), 5.66 (d, J=10.0 Hz, 1H), 6.82 (d, J=9.2 Hz, 2H), 6.92-6.95 (dd, J=2.4 and 8.8 Hz, 1H), 6.99 (d, J=9.2 Hz, 2H), 7.07 (d, J=8.4 Hz, 1H), 7.50 (d, J=2.4 Hz, 1H). 13C NMR (400 MHz, CDCl3): δ 24.38, 28.90, 48.57, 55.46, 55.76, 61.40, 69.61, 108.02, 114.34, 119.12, 127.53, 127.84, 128.47, 130.32, 132.61, 157.67, 158.36, 159.42, 168.66. Anal. (C21H22N2O4) C, H, N.
General procedure for the preparation of 2-carbothioamides and 2-carboxamides of (3R,3aR)-rel-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazoles. Exemplified for (3R,3aR)-rel-2-carbothioamide-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (152): A suspension of 2-(4-methoxybenzylidene)-7-methoxy-1-tetralone (0.850 g, 0.0028 mol) and thiosemicarbazide (0.790 g, 0.0084 mol) in ethanol (30 mL) and concentrated HCl (2 mL) was refluxed for 6 h. The resulting solution was cooled to room temperature. The solid precipitate was isolated by filtration, washed with ethanol and then recrystallized from ethanol to give (152) (0.985 g, 96%): mp 236-39° C., 1H NMR (500 MHz, CDCl3): δ 1.04-1.13 (m, 1H), 1.76-1.81 (m, 1H), 2.75-2.87 (m, 2H), 3.60-3.66 (m, 1H), 3.76 (s, 3H), 3.85 (s, 3H), 6.07 (d, J=10.5 Hz, 1H), 6.83 (d, J=9.0 Hz, 2H), 6.93-6.95 (dd, J=3.0 and 8.5 Hz, 1H), 6.99 (d, J=9.0 Hz, 2H), 7.08 (d, J=8.5 Hz, 1H), 7.49 (d, J=3.0 Hz, 1H). HFABMS m/z 368.1439 (calc for C20H21N3O2S, MH+, 368.1433).
(3R,3aR)-rel-2-carboxamide-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (153): yield 75%, mp 217-20° C., 1H NMR (500 MHz, CDCl3): δ 1.02-1.11 (m, 1H), 1.74-1.79 (m, 1H), 2.73-2.86 (m, 2H), 3.54-3.60 (m, 1H), 3.75 (s, 3H), 3.86 (s, 3H), 5.58 (d, J=10.5 Hz, 1H), 6.81 (d, J=8.5 Hz, 2H), 6.88-6.90 (dd, J=3.0 and 8.5 Hz, 1H), 7.01 (d, J=8.5 Hz, 2H), 7.05 (d, J=8.5 Hz, 1H), 7.47 (d, J=3.0 Hz, 1H). HFABMS m/z 352.1663 (calc for C20H21N3O3, MH+, 352.1663).
(3R,3aR)-rel-2-carbothioamide-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-N-methyl-2H-benz[g]indazole (154): yield 28%, mp 199-200° C., 1H NMR (500 MHz, CDCl3): δ 1.02-1.11 (m, 1H), 1.76-1.81 (m, 1H), 2.75-2.86 (m, 2H), 3.21 (d, J=5.0 Hz, 3H), 3.56-3.62 (m, 1H), 3.75 (s, 3H), 3.87 (s, 3H), 6.10 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.91-6.94 (dd, J=3.0 and 8.5 Hz, 1H), 6.96 (d, J=8.5 Hz, 2H), 7.07 (d, J=8.5 Hz, 1H), 7.46 (m, 1H), 7.48 (d, J=3.0 Hz, 1H). HFABMS m/z 382.1579 (calc for C21H23N3O2S, MH+, 382.1589).
Preparation of (3R,3aR)-rel-2-carboxamidine-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (156): A solution of (152) (0.5 g, 1.3 mmol) and methyl iodide (1.0 mL) in ethanol (10 mL) was refluxed for 2 h. When the reaction mixture was concentrated to a fourth of its volume a solid precipitate formed. The mixture was filtered and the solid was washed with cold ethanol to give (156) (565 mg, 85%) which was used without further purification. A solution of (156) (175 mg, 0.34 mmol) and ammonia (2.0 N solution in ethanol, 15 mL) in ethanol (15 mL) was stirred at 60° C. for 16 h. The reaction mixture was concentrated. The solid was recrystallized from methanol-diethyl ether to give (157) (105 mg, 88%): mp 170-75° C., 1H NMR (500 MHz, CDCl3): δ1.07-1.15 (m, 1H), 1.74-1.78 (m, 1H), 2.76-2.89 (m, 2H), 3.77 (s, 3H), 3.79-3.84 (m, 1H), 3.88 (s, 3H), 6.19 (d, J=10.5 Hz, 1H), 6.86 (d, J=8.5 Hz, 2H), 6.97-6.99 (dd, J=3.0 and 8.5 Hz, 1H), 7.10 (d, J=8.5 Hz, 2H), 7.50 (d, J=3.0 Hz, 1H). HFABMS m/z 351.1825 (calc for C20H22N4O2, MH+, 351.1821).
Preparation of (3R,3aR,5S)-rel-2-acetyl-5-azido-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (143) and 2-acetyl-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (144): To a solution of (141) (800 mg, 2.2 mmol) in acetonitrile (10 mL) under an argon atmosphere was added trimethylsilyl azide (1.517 mL, 5.0 eq.) followed by slow addition of [bis(trifluoroacetoxy)iodo]benzene (2.948 g, 3.0 eq.). The reaction mixture was stirred at room temperature for 24 h. The reaction mixture was concentrated to give a dark brown residue that was purified by column chromatography on silica gel using ethyl acetate-hexane (1:3) as eluent to give (143) (252 mg, 29%), (144) (239 mg, 31%) and recovered starting material (141) (45 mg).
(143): thick oil, 1H NMR (500 MHz, CDCl3): δ 1.24-1.28 (m, 1H), 1.82-1.88 (m, 1H), 2.46 (s, 3H), 3.74 (s, 3H), 3.86-3.89 (m, 1H), 3.91 (s, 3H), 4.66 (m, 1H), 5.70 (d, J=11.5 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.96 (d, J=8.5 Hz, 2H), 7.0-7.02 (dd, J=3.0 and 9.0 Hz, 1H), 7.19 (d, J=9.0 Hz, 1H), 7.60 (d, J=3.0 Hz, 1H). HFABMS m/z 392.1722 (calc for C21H22N5O3, MH+, 392.1723).
(144): mp 169-73° C., 1H NMR (500 MHz, CDCl3): δ 3.02 (s, 3H), 3.91 (s, 3H), 4.04 (s, 3H), 7.10 (d, J=8.5 Hz, 2H), 7.27-7.29 (dd, J=3.0 and 8.5 Hz, 1H), 7.74 (d, J=2.5 Hz, 2H), 7.87 (d, J=8.5 Hz, 1H), 7.92 (d, J=8.5 Hz, 2H), 8.96 (d, J=2.5 Hz, 1H). HFABMS m/z 347.1365 (calc for C21H19N2O3, MH+, 347.1396).
Preparation of (3R,3aR,5S)-rel-2-acetyl-5-amino-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (145): A solution of (143) (0.240 g, 0.61 mmol) and 10% Pd—C (50 mg) in ethyl acetate (10 mL) was stirred under hydrogen (80 psi) for 24 h. The reaction mixture was filtered though a short column of celite. The filtrate was triturated with aqueous acetic acid (50%, 10 mL). The solid was then recrystallized from ethyl acetate-water to give (145) (0.153 g, 59%): mp 116-19° C., 1H NMR (500 MHz, CDCl3): δ 1.68-1.72 (m, 1H), 2.10-2.12 (m, 1H), 2.62 (s, 3H), 3.75 (s, 3H), 3.88 (s, 3H), 4.01-4.07 (m, 1H), 4.14-4.16 (m, 1H), 5.69 (d, J=11.0 Hz, 1H), 6.80 (d, J=8.5 Hz, 2H), 6.95-6.98 (m, 3H), 7.19 (d, J=9.0 Hz, 1H), 7.53 (d, J=3.0 Hz, 1H). HFABMS m/z 366.1818 (calc for C21H24N3O3, MH+, 366.1818).
Preparation of (3R,3aR,5S)-rel-2-acetyl-5-(N,N-dimethylamino)-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (146): To a solution of (145) (210 mg, 0.57 mmol) in THF (10 mL) was added formic acid (0.150 mL) at 0° C., followed by slow addition of aqueous formaldehyde (37 wt %). The reaction mixture was refluxed for 24 h. The solution was allowed to cool, made basic with aqueous NaOH (25 wt %) and the extracted with ethyl acetate. The organic layer was washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate as eluent to give (146) (105 mg, 47%): mp 123-28° C., 1H NMR (500 MHz, CDCl3): δ 0.9-1.02 (m, 1H), 2.21 (s, 6H), 2.43 (s, 3H), 3.23 (m, 1H), 3.73 (s, 3H), 3.89 (s, 3H), 4.03-4.09 (m, 1H), 5.66 (d, J=11.0 Hz, 1H), 6.78 (d, J=8.5 Hz, 2H), 6.90-6.92 (dd, J=2.5 and 8.5 Hz, 1H), 6.96 (d, J=8.5 Hz, 2H), 7.12 (d, J=8.5 Hz, 1H), 7.58 (d, J=2.5 Hz, 1H). Anal. (C23H27N3O3) C, H, N.
Preparation of (3R,3aR)-rel-2-ethyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (157): To the solution of (141) (180 mg, 0.51 mmol) in THF (5 mL) was added LiAlH4 (2.056 mL, 2.056 mmol; 1M in THF) at room temperature. The reaction mixture was stirred at room temperature for 1 h and then quenched with methanol followed by ice. The reaction mixture was extracted with ethyl acetate. Organic layer was washed with water, dried over anhydrous sodium sulfate and concentrated. The residue was purified by column chromatography on silica gel using 25% ethyl acetate-hexane as eluent to give (157) (30 mg, 17%): thick oil, 1H NMR (500 MHz, CDCl3): δ 1.40 (t, J=7.0 Hz, 3H), 1.72-2.04 (m, 2H), 2.62-2.85 (m, 2H), 3.87 (s, 6H), 4.15 (q, J=7.0 Hz, 2H), 4.75 (d, J=10.5 Hz, 1H), 6.75-6.77 (dd, J=8.0 and 3.0 Hz, 1H), 7.01 (d, J=8.0 Hz, 2H), 7.12 (d, J=8.5 Hz, 1H), 7.29 (d, J=8.0 Hz, 2H), 7.44 (d, J=3.0 Hz, 1H). LRMS m/z 336.3 (calc for C21H24N2O2, M+, 336.2).
Characterization of Compounds 198-212(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-7,8-dimethoxy-2H-benz[g]indazole (198): yield 28%, mp 231-33° C., 1H NMR (400 MHz, CDCl3): δ 1.92-1.97 (m, 1H), 2.24-2.27 (m, 1H), 2.40 (s, 3H), 2.86-2.90 (m, 2H), 3.11-3.18 (m, 1H), 3.89 (s, 3H), 3.96 (s, 3H), 4.89 (d, J=9.6 Hz, 1H), 6.63 (s, 1H), 7.01-7.06 (dd, J=2.4 and 8.8 Hz, 2H), 7.26-7.29 (m, 2H), 7.38 (s, 1H). HRFABMS m/z 369.5 (calc for C21H22FN2O3, MH+, 369.4095).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-fluorophenyl)-2H-benz[g]indazole (199): yield 15%, mp 168-71° C., 1H NMR (400 MHz, CDCl3): δ 2.00-2.04 (m, 1H), 2.31-2.35 (m, 1H), 2.42 (s, 3H), 2.96-2.99 (m, 2H), 3.19-3.25 (m, 1H), 4.97 (d, J=12.0 Hz, 1H), 7.07 (t, J=8.0 Hz, 2H), 7.22 (d, J=8.0 Hz, 1H), 7.28-7.35 (m, 4H), 7.99 (d, J=8.0 Hz, 1H). Anal. Calcd for C19H17FN2O: C, 74.01; H, 5.56; N, 9.08. Found: C, 73.88; H, 5.48; N, 9.12.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3-fluorophenyl)-8-methoxy-2H-benz[g]indazole (200): yield 30%, mp 196-99° C., 1H NMR (400 MHz, CDCl3): δ1.92-1.99 (m, 1H), 2.27-2.32 (m, 1H), 2.42 (s, 3H), 2.86-2.89 (m, 2H), 3.14-3.20 (m, 1H), 3.87 (s, 3H), 4.93 (d, J=7.2 Hz, 1H), 6.91-7.01 (m, 3H), 7.08-7.10 (m, 2H), 7.29-7.34 (m, 1H), 7.43 (d, J=2.0 Hz, 1H). HFABMS m/z 339.1419 (calc for C20H19FN2O2, MH+, 339.1509).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-2H-benz[g]indazole (201): yield 20%, mp 260-62° C., 1H NMR (500 MHz, CDCl3): δ 1.91-2.00 (m, 1H), 2.27-2.32 (m, 1H), 2.38 (s, 3H), 2.99-2.95 (m, 2H), 3.20-3.25 (m, 1H), 3.78 (s, 3H), 4.91 (d, J=9.5 Hz, 1H), 6.88 (d, J=9.0 Hz, 2H), 7.17 (d, J=2.5 Hz, 1H), 7.23-7.34 (m, 4H), 7.86 (d, J=7.0 Hz, 1H).). Anal. Calcd for C20H20N2O2: C, 74.98; H, 6.29; N, 8.74. Found: C, 74.15; H, 6.18; N, 8.58.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-nitroxyphenyl)-8-methoxy-2H-benz[g]indazole (202): yield 20%, mp 170-75° C., 1H NMR (400 MHz, CDCl3): δ 1.90-2.01 (m, 1H), 2.23-2.28 (m, 1H), 2.38 (s, 3H), 2.83-2.87 (m, 2H), 3.10-3.17 (m, 1H), 3.83 (s, 3H), 4.98 (d, J=9.2 Hz, 1H), 6.89-6.91 (dd, J=2.4 and 7.6 Hz, 1H), 7.07 (d, J=8.4 Hz, 1H), 7.40 (d, J=2.4 Hz, 1H), 7.43 (d, J=8.4 Hz, 2H), 8.19 (d, J=8.4 Hz, 2H). HFABMS m/z 366.1462 (calc for C20H19N3O4, MH+, 366.1454).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-6-methoxy-2H-benz[g]indazole (203): yield 27%, mp 175-78° C., 1H NMR (500 MHz, CDCl3): δ1.85-1.89 (m, 1H), 2.32-2.35 (m, 1H), 2.38 (s, 3H), 2.53-2.60 (m, 1H), 3.09-3.18 (m, 2H), 3.79 (s, 3H), 3.84 (s, 3H), 4.91 (d, J=9.5 Hz, 1H), 6.86-6.89 (m, 3H), 7.23-7.27 (m, 3H), 7.57 (d, J=7.5 Hz, 1H).). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.72; H, 6.35; N, 8.02.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-benzyloxyphenyl)-8-methoxy-2H-benz[g]indazole (204): yield 11%, mp 149-51° C., 1H NMR (500 MHz, CDCl3): δ 1.88-1.97 (m, 1H), 2.25-2.29 (m, 1H), 2.39 (s, 3H), 2.86-2.88 (m, 2H), 3.17-3.22 (m, 1H), 3.87 (s, 3H), 4.95 (d, J=9.2 Hz, 1H), 5.07 (s, 2H), 6.90-6.92 (dd, J=3.0 and 9.0 Hz, 1H), 6.96 (d, J=9.0 Hz, 2H), 7.09 (d, J=8.5 Hz, 1H), 7.23 (d, J=8.5 Hz, 2H), 7.25 (s, 1H), 7.30-7.43 (m, 4H). Anal. Calcd for C27H26N2O3: C, 76.03; H, 6.14; N, 6.57. Found: C, 76.07; H, 5.95; N, 6.60.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3,4-methylenedioxyphenyl)-8-methoxy-2H-benz[g]indazole (205): yield 21%, mp 165-69° C., 1H NMR (500 MHz, CDCl3): δ 1.87-1.94 (m, 1H), 2.25-2.29 (m, 1H), 2.41 (s, 3H), 2.86-2.88 (m, 2H), 3.14-3.19 (m, 1H), 3.84 (s, 3H), 4.87 (d, J=9.4 Hz, 1H), 5.94 (s, 2H), 6.76-6.78 (m, 3H), 6.90-6.93 (dd, J=3.0 and 8.5 Hz, 1H), 7.09 (d, J=9.0 Hz, 1H), 7.42 (d, J=2.5 Hz, 1H). Anal. Calcd for C21H20N2O4: C, 69.22; H, 5.53; N, 7.69. Found: C, 68.94; H, 5.65; N, 7.60.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(3,4-ethylenedioxyphenyl)-8-methoxy-2H-benz[g]indazole (206): yield 28%, mp 194-97° C., 1H NMR (500 MHz, CDCl3): δ 1.82-1.94 (m, 1H), 2.25-2.30 (m, 1H), 2.40 (s, 3H), 2.82-2.84 (m, 2H), 3.16-3.20 (M, 1H), 3.86 (s, 3H), 4.27 (s, 4H), 4.82 (d, J=9.0 Hz, 1H), 6.77-6.81 (m, 2H), 6.84 (d, J=8.0 Hz, 1H), 6.90-6.92 (dd, J=3.0 and 9.0 Hz, 1H), 7.08 (d, J=8.5 Hz, 1H), 7.42 (d, J=2.5 Hz, 1H). Anal. Calcd for C22H22N2O4: C, 69.83; H, 5.86; N, 7.40. Found: C, 68.58; H, 5.75; N, 7.25.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-9-methoxy-2H-benz[g]indazole (207): yield 14%, mp 158-62° C., 1H NMR (500 MHz, CDCl3): δ 1.91-1.99 (m, 1H), 2.23-2.28 (m, 1H), 2.42 (s, 3H), 2.95-2.97 (m, 2H), 3.19-3.24 (m, 1H), 3.79 (s, 3H), 3.98 (s, 3H), 4.84 (d, J=9.0 Hz, 1H), 6.79-6.80 (dd, J=1.0 and 8.5 Hz, 1H), 6.84 (d, J=8.5 Hz, 1H), 6.88 (d, J=9.0 Hz, 2H), 7.25-7.28 (m, 3H).). Anal. Calcd for C21H22N2O3: C, 71.98; H, 6.33; N, 7.99. Found: C, 71.91; H, 6.38; N, 7.96.
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-benzyloxy-2H-benz[g]indazole (208): yield 19%, mp 144-46° C., 1H NMR (500 MHz, CDCl3): δ 1.88-1.97 (m, 1H), 2.25-2.29 (m, 1H), 2.38 (s, 3H), 2.86-2.88 (m, 2H), 3.17-3.22 (m, 1H), 3.79 (s, 3H), 4.90 (d, J=9.5 Hz, 1H), 5.12 (s, 2H), 6.89 (d, J=9.0 Hz, 2H), 6.97-6.99 (dd, J=2.0 and 8.5 Hz, 1H), 7.09 (d, J=8.5 Hz, 1H), 7.24 (d, J=9.0 Hz, 2H), 7.33-7.36 (m, 1H), 7.39-7.42 (m, 2H), 7.46-7.47 (m, 2H), 7.53 (d, J=2.0 Hz, 1H). HFABMS m/z 427.2029 (calc for C27H26N2O3, MH+, 427.2022).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-thiomethoxyphenyl)-8-methoxy-2H-benz[g]indazole (209): yield 19%, mp 144-45° C., 1H NMR (500 MHz, CDCl3): δ 1.89-1.98 (m, 1H), 2.25-2.30 (m, 1H), 2.40 (s, 3H), 2.46 (s, 3H), 2.85-2.88 (m, 2H), 3.15-3.21 (m, 1H), 3.86 (s, 3H), 4.90 (d, J=9.5 Hz, 1H), 6.90-6.93 (dd, J=3.0 and 8.5 Hz, 1H), 7.09 (d, J=9.0 Hz, 1H), 7.22-7.25 (m, 4H), 7.43 (d, J=3.0 Hz, 1H). HFABMS m/z 367.1471 (calc for C21H22N2O2S, MH+, 367.1480).
(3R,3aS)-rel-2-acetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-(4-morpholino)ethoxy-2H-benz[g]indazole (210): yield 30%, mp 97-99° C., 1H NMR (500 MHz, CDCl3): δ 1.88-1.96 (m, 1H), 2.25-2.29 (m, 1H), 2.38 (s, 3H), 2.60 (t, J=3.6 Hz, 4H), 2.82-2.87 (m, 4H), 3.17-3.22 (m, 1H), 3.75 (t, J=4.5 Hz, 4H), 3.79 (s, 3H), 4.17 (d, J=5.5 Hz, 2H), 4.90 (d, J=9.5 Hz, 1H), 6.88 (d, J=9.5 Hz, 2H), 6.91-6.93 (dd, J=3.0 and 9.0 Hz, 1H), 7.08 (d, J=8.5 Hz, 1H), 7.24 (d, J=9.0 Hz, 2H), 7.45 (d, J=3.0 Hz, 1H). HFABMS m/z 450.2393 (calc for C26H31N3O4, MH+, 450.2393).
(3R,3aS)-rel-2-acetyl-2,3,3a,4-tetrahydro-3-(4-fluorophenyl)-8-methoxy-[1]benzopyrano[4,3-c]pyrazole (211): yield 34%, mp 174-76° C. 1H NMR (500 MHz, CDCl3): δ 2.40 (s, 3H), 3.50-3.56 (m, 1H), 3.84 (s, 3H), 4.10-4.14 (dd, J=10.5 and 12.5 Hz, 1H), 4.55-4.59 (dd, J=6.0 and 10.5 Hz, 1H), 4.97 (d, J=9.5 Hz, 1H), 6.86 (d, J=8.5 Hz, 1H), 6.92-6.94 (dd, J=3.0 and 8.5 Hz, 1H), 7.05 (dd, J=8.5 and 9 Hz, 2H), 7.25-7.28 (m, 3H). HFABMS m/z 341.1306 (calc for C19H17FN2O3, MH+, 341.1301).
(3R,3aS)-rel-2-methoxyacetyl-3,3a,4,5-tetrahydro-3-(4-methoxyphenyl)-8-methoxy-2H-benz[g]indazole (212): yield 49%, mp 124-27° C., 1H NMR (500 MHz, CDCl3): δ 1.87-1.96 (m, 1H), 2.26-2.30 (m, 1H), 2.86-2.88 (m, 2H), 3.15-3.21 (m, 1H), 3.48 (s, 3H), 3.78 (s, 3H), 3.87 (s, 3H), 4.50 (d, J=16.0 Hz, 1H), 4.56 (d, J=16.0 Hz, 1H), 4.93 (d, J=9.5 Hz, 1H), 6.88 (d, J=9.0 Hz, 2H), 6.91-6.94 (dd, J=3.0 and 8.5 Hz, 1H), 7.10 (d, J=8.5 Hz, 1H), 7.22 (d, J=9.0 Hz, 2H), 7.40 (d, J=3.0 Hz, 1H).
Evaluation of Necroptosis Inhibitory Activity
Necroptosis activity was performed using a FADD-deficient variant of human Jurkat T cells treated with TNF-α as described herein. For EC50 value determinations, cells (500,000 cells/mL, 100 μL per well in a 96-well plate) were treated with 10 ng/mL of human TNF-α′ in the presence of increasing concentration of test compounds for 24 hours followed by ATP-based viability assessment. Compound test concentrations were 0.03-100 μM. Cell viability assessments were performed using a commercial luminescent ATP-based assay kit (CellTiter-Glo, Promega, Madison, Wis.). Cell viability values were adjusted to account for nonspecific toxicity, which in most cases were <10%. EC50 values were calculated using nonlinear regression analysis of sigmoid dose-response (variable slope) curves from plots of log [I] verses viability values.
Example 28 Synthesis of TetralonesPreparation of 7-benzyloxy-1-tetralone: To a suspension of 7-hydroxy-1-tetralone (1.0 g, 0.0061 mol) and K2CO3 (5.5 g) in DMF (20 mL) under an argon atmosphere was added benzyl bromide (0.725 mL, 0.0061 mol) at room temperature. The reaction mixture was then stirred at room temperature for 18 h before being poured onto ice. The aqueous solution was extracted with ethyl acetate, washed with water, dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (15%) as eluent to give compound 7-benzyloxy-1-tetralone (1.395 g, 90%): thick oil, 1H NMR (500 MHz, CDCl3): δ 2.09-2.14 (m, 2H), 2.63 (d, J=6.5 Hz, 2H), 2.90 (d, J=6.0 Hz, 2H), 5.75 (s, 2H), 7.11-7.13 (dd, J=3.0 and 8.5 Hz, 1H), 7.17 (d, J=8.5 Hz, 1H), 7.31-7.45 (m, 5H), 7.62 (d, J=3.0 Hz, 1H). HFABMS m/z 253.1231 (calc for C17H16O2, MH+, 253.1229).
Preparation of 7-(2-morpholino-4-yl-ethoxy)-1-tetralone: To a suspension of 7-hydroxy-1-tetralone (0.900 g, 5.5 mmol) and K2CO3 (5 g) in DMF (20 mL) was added 4-(2-chloroethyl)morpholine hydrochloride (1.035 g, 5.5 mmol) at room temperature and under an argon atmosphere. The reaction mixture was stirred at room temperature for ˜16 hours before being poured on ice. The aqueous solution was extracted in ethyl acetate, washed with water, and dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (2:8) as eluent to give 7-(2-morpholino-4-ylethoxy)-1-tetralone (1.260 g, 83%): thick oil, 1H NMR (500 MHz, CDCl3): δ 2.08-2.14 (m, 2H), 2.56-2.58 (m, 4H), 2.63 (t, J=7.0 Hz, 2H), 2.80 (t, J=5.0 Hz, 2H), 2.88 (t, J=6.5 Hz, 2H), 3.73 (t, J=5.0 Hz, 2H), 4.14 (t, J=6.0 Hz, 2H), 7.06-7.08 (dd, J=3.0 and 8.5 Hz, 1H), 7.17 (d, J=8.5 Hz, 1H), 7.51 (d, J=3.0 Hz, 1H). HFABMS m/z 276.1599 (calc for C16H21NO3, MH+, 276.1600).
Preparation of 7-(3-ethoxycarbonylpropoxy)-1-tetralone: To a suspension of 7-hydroxy-tetralone (0.870 g, 5.3 mmol) and K2CO3 (5 g, excess) in DMF (20 mL) was added ethyl-4-bromobutyrate (0.770 mL, 5.3 mmol) at room temperature and under argon atmosphere. The reaction mixture was stirred at room temperature for ˜16 hours before being poured on ice. The aqueous solution was extracted in ethyl acetate, washed with water, and dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified by column chromatography on silica gel using ethyl acetate-hexane (2:8) as eluent to give 7-(3-ethoxycarbonylpropoxy)-1-tetralone (1.180 g, 80%): mp 62-63° C., 1H NMR (500 MHz, CDCl3): δ 1.26 (t, J=7.0 Hz, 3H), 2.08-2.14 (m, 4H), 2.48-2.51 (dd, J=7.00 and 7.5 Hz, 2H), 2.62-2.64 (dd, J=6.0 and 6.5 Hz, 2H), 2.88-2.90 (dd, J=6.0 and 6.5 Hz, 2H), 4.02-4.05 (dd, J=6.0 and 6.5 Hz, 2H), 4.15 (q, J=7.0 Hz, 2H), 7.03-7.05 (dd, J=3.0 and 8.0 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.49 (d, J=3.0 Hz, 1H). HFABMS m/z 277.1436 (calc for C16H20O4, MH+, 277.1440).
Preparation of 4-(8-oxo-5,6,7-tetrahydro-naphathalen-2-yloxy)butyric acid: The 7-(3-ethoxycarbonylpropoxy)-1-tetralone (1.100 g, 3.9 mmol) was dissolved in methanol (20 mL), and treated with NaOH (2 mL, 10N) and stirred at room temperature for 30 minutes, and acidified with dilute HCl (1.0 N). Then the reaction mixture was extracted in ethyl acetate, washed with water, and dried on Na2SO4. The residue obtained after concentration of ethyl acetate was recrystallized from ethyl acetate-hexane give acid 4-(8-oxo-5,6,7-tetrahydro-naphathalen-2-yloxy)butyric acid (0.970 g, 99%): mp 119-20° C., 1H NMR (500 MHz, CDCl3): δ 2.10-2.15 (m, 4H), 2.56-2.59 (m, 2H), 2.63 (t, J=6.5 Hz, 2H), 2.89 (t, J=6.5 Hz, 2H), 4.06 (t, J=6.5 Hz, 2H), 7.03-7.05 (dd, J=3.0 and 8.5 Hz, 1H), 7.15 (d, J=8.5 Hz, 1H), 7.49 (d, J=3.0 Hz, 1H). HFABMS m/z 249.1132 (calc for C14H16O4, MH+, 249.1127).
Preparation of 7-(4-morpholin-4-yl-4-oxo-butoxy)-1-tetralone: To a suspension of 7-(3-ethoxycarbonylpropoxy)-1-tetralone (0.925 g, 3.7 mmol), HUBT (1.415 g, 3.7 mmol), N,N-diisopropylethyl amine (1.3 mL) in CH2Cl2 (20 mL) was added morpholine (0.330 mL, 3.7 mmol) at room temperature and under argon atmosphere. The reaction mixture was then stirred at room temperature for 24 h and then concentrated. The residue dissolved in ethyl acetate (50 mL) and the organic layer was washed with dil. HCl, water, brine, and dried over anhydrous Na2SO4, filtered and concentrated. The residue was purified on the column of silica gel using ethyl acetate-hexane (8:2) as an eluent to give 7-(4-morpholin-4-yl-4-oxo-butoxy)-1-tetralone (1.010 g, 86%): mp 88-90° C., 1H NMR (500 MHz, CDCl3): δ 2.07-2.15 (m, 4H), 2.50 (t, J=7.5 Hz, 2H), 2.61 (T, J=7.5 Hz, 2H), 2.88 (t, J=6.0 Hz, 2H), 3.46 (t, J=5.0 Hz, 2H), 3.59-3.66 (m, 6H), 4.04 (t, J=6.0 Hz, 2H), 7.01-7.03 (dd, J=3.0 and 8.5 Hz, 1H), 7.15 (d, J=8.5 Hz, 1H), 7.48 (d, J=3.0 Hz, 1H). HFABMS m/z 318.1706 (calc for C18H23NO4, MH+, 318.1705).
All 2-arylidene-1-tetralones, 2-(arylidene)chroman-4-ones and 2-(arylidene)thiochroman-4-ones were prepared using the basic conditions, except where noted.
R1═H; R2=4′-F: yield 70%, mp 114-17° C., 1H NMR (500 MHz, CDCl3): δ 2.95 (t, J=6.5 Hz, 2H), 3.09-3.12 (m, 2H), 7.09-7.13 (dd, J=9.0 and 8.5 Hz, 2H), 7.24-7.26 (m, 1H), 7.31-7.52 (m, 4H), 7.81 (s, 1H), 8.18 (d, J=9.00 Hz, 1H), HFABMS m/z 253.1026 (calc for C17H14FO, MH+, 253.1029).
R1=6-OMe; R2=4′-F: yield 75%, mp 104-8° C., 1H NMR (500 MHz, CDCl3): δ 2.90-2.93 (dd, J=6.0 and 6.5 Hz, 2H), 3.06-3.10 (m, 2H), 3.87 (s, 3H), 6.71 (d, J=3.0 Hz, 1H), 6.87 (dd, J=2.5 and 9.0 Hz, 1H), 7.08-7.11 (dd, J=9.0 and 8.5 Hz, 2H), 7.39-7.42 (dd, J=8.5 Hz each, 2H), 7.76 (s, 1H), 8.11 (d, J=9.0 Hz, 1H). HFABMS m/z 283.1132 (calc for C18H16FO2, MH+, 283.1134).
R1=6,7-di-OMe; R2=4′-F: yield 89%, mp 151-53° C., 1H NMR (500 MHz, CDCl3): δ 2.88-2.91 (dd, J=6.5 and 7.0 Hz, 2H), 3.07-3.10 (m, 2H), 3.95 (s, 6H), 6.67 (s, 1H), 7.08-7.12 (dd, J=9.0 and 8.5 Hz, 2H), 7.39-7.42 (m, 2H), 7.62 (s, 1H), 7.77 (s, 1H). HFABMS m/z 313.1237 (calc for C19H18FO3, MH+, 313.1240).
R1=7-OMe; R2=3′-F: yield 57%, mp 95-97° C., 1H NMR (500 MHz, CDCl3): δ 2.89-2.91 (m, 2H), 3.07-3.10 (m, 2H), 3.87 (s, 3H), 7.03-7.21 (m, 4H), 7.39-7.40 (m, 1H), 7.61 (d, J=2.4 Hz, 1H), 7.78 (s, 1H). HFABMS m/z 283.1230 (calc for C18H16FO2, MH+, 283.1134).
R1=5-OMe; R2=4′-OMe: yield 69%, mp 97-101° C., 1H NMR (500 MHz, CDCl3): δ 2.91-2.98 (m, 2H), 3.09-3.12 (m, 2H), 3.85 (s, 3H), 3.87 (s, 3H), 6.95 (d, J=9.0 Hz, 2H), 7.04 (d, J=7.5 Hz, 1H), 7.31 (t, J=7.5 Hz, 1H), 7.43 (d, J=9.0 Hz, 2H), 7.74-7.76 (dd, J=1.0 and 7.5 Hz, 1H), 7.80 (s, 1H). HFABMS m/z 295.1335 (calc for C19H18O3, MH+, 295.1334).
R1=7-OMe; R2=4′-OMe: yield 78%, mp 133-37° C., 1H NMR (500 MHz, CDCl3): δ 2.87-2.90 (dd, J=6.0 and 7.0 Hz, 2H), 3.10-3.13 (m, 2H), 3.85 (s, 3H), 3.87 (s, 3H), 6.94-6.96 (dd, J=2.5 and 7.00 Hz, 2H), 7.05-7.07 (dd, J=2.5 and 8.00 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.42-7.44 (dd, J=2.0 and 7.0 Hz, 2H), 7.61 (d, J=2.5 Hz, 1H), 7.83 (s, 1H). HFABMS m/z 295.1339 (calc for C19H19O3, MH+, 295.1339).
R1=8-OMe; R2=4′-OMe: yield 70%, mp 117-20° C., 1H NMR (500 MHz, CDCl3): δ 2.83-2.86 (m, 2H), 3.01-3.04 (m, 2H), 3.87 (s, 3H), 3.92 (s, 3H), 6.81-6.82 (d, J=7.0 Hz, 1H), 6.88 (d, J=8.5 Hz, 1H), 6.92 (d, J=9.0 Hz, 2H), 7.37-7.40 (dd, J=8.0 and 8.5 Hz, 1H), 7.42 (d, J=9.0 Hz, 2H), 7.82 (s, 1H). HFABMS m/z 295.1335 (calc for C19H19O3, MH+, 295.1334).
R1=7-OMe; R2=4′-NO2: yield 86%, mp 158-62° C., 1H NMR (500 MHz, CDCl3): δ 2.91-2.94 (dd, J=6.5 and 6.0 Hz, 2H), 3.06-3.09 (m, 2H), 3.87 (s, 3H), 7.09-7.12 (dd, J=2.5 and 8.0 Hz, 1H), 7.19 (d, J=8.0 Hz, 1H), 7.57 (d, J=9.0 Hz, 2H), 7.62 (d, J=2.5 Hz, 1H), 7.83 (s, 1H), 8.27 (d, J=9.0 Hz, 2H). HFABMS m/z 310.1081 (calc for C18H16NO4, MH+, 310.1079).
R1═H; R2=4′-OMe: yield 64%, mp 110-13° C., 1H NMR (500 MHz, CDCl3): δ 2.94-2.96 (t, J=6.5 Hz, 2H), 3.13-3.16 (m, 2H), 3.87 (s, 3H), 6.94-6.97 (m, 2H), 7.25 (d, J=9.0 Hz, 1H), 7.34-7.37 (dd, J=7.5 and 7.0 Hz, 1H), 7.43 (d, J=9.0 Hz, 2H), 7.46-7.50 (m, 1H), 7.85 (s, 1H), 8.21 (d, J=8.0 Hz, 1H). HFABMS m/z 265.1223 (calc for C18H17O2, MH+, 265.1229).
R1=7-OMe; R2=4′-OBn: yield 53%, mp 119-24° C., 1H NMR (500 MHz, CDCl3): δ 2.87-2.89 (dd, J=6.0 and 7.0 Hz, 2H), 3.10-3.13 (m, 2H), 3.87 (s, 3H), 5.11 (s, 2H), 7.01-7.05 (m, 2H), 7.06 (d, J=3.0 Hz, 1H), 7.07 (d, J=3.0 Hz, 1H), 7.16 (d, J=8.5 Hz, 1H), 7.33-7.45 (m, 6H), 7.61 (d, J=3.0 Hz, 1H), 7.83 (s, 1H). HFABMS m/z 371.1651 (calc for C25H23O3, MH+, 371.1647).
R1=7-OMe; R2=3′,4′-OCH2O: yield 57%, mp 134-35° C., 1H NMR (500 MHz, CDCl3): δ 2.87-2.90 (dd, J=6.0 and 7.0 Hz, 2H), 3.09-3.12 (m, 2H), 3.87 (s, 3H), 6.01 (s, 2H), 6.86 (d, J=8.5 Hz, 1H), 6.95-6.99 (m, 2H), 7.06 (d, J=2.5 Hz, 1H), 7.07 (d, J=2.5 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.60 (d, J=3.0 Hz, 1H), 7.78 (s, 1H). HFABMS m/z 309.1120 (calc for C19H16O4, MH+, 309.1127)
R1=7-OMe; R2=3′,4′-OCH2CH2O: yield 61%, mp 128-34° C., 1H NMR (500 MHz, CDCl3): δ 2.87-2.89 (dd, J=6.0 and 6.5 Hz, 2H), 3.10-3.13 (m, 2H), 3.87 (s, 3H), 4.28-4.31 (m, 4H), 6.90 (d, J=8.0 Hz, 1H), 6.97-7.01 (m, 2H), 7.05-7.07 (dd, J=3.0 and 8.8 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.60 (d, J=3.0 Hz, 1H), 7.76 (s, 1H). HFABMS m/z 323.1279 (calc for C20H19O4, MH+, 323.1283).
R1=7-OBn; R2=4′-OMe: yield 60%, mp 100-104° C., 1H NMR (500 MHz, CDCl3): δ 2.87-2.90 (m, 2H), 3.11-3.14 (m, 2H), 3.85 (s, 3H), 5.13 (s, 3H), 6.95 (d, J=9.0 Hz, 2H), 7.11-7.18 (m, 3H), 7.33-7.47 (m, 6H), 7.71 (d, J=2.5 Hz, 1H), 7.83 (s, 1H). HFABMS m/z 371.1642 (calc for C25H22O3, MH+, 371.1647).
R1=7-OCH2CH2-morpholine; R2=4′-OMe: yield 79%, mp 62-65° C., 1H NMR (500 MHz, CDCl3): δ 2.59 (t, J=4.5 Hz, 4H), 2.82 (t, J=5.5 Hz, 2H), 2.88 (t, J=5.5 Hz, 2H), 3.10-3.13 (m, 2H), 3.74 (t, J=4.5 Hz, 4H), 3.85 (s, 3H), 4.18 (t, J=6.0 Hz, 2H), 6.95 (d, J=9.0 Hz, 2H), 7.07-7.09 (dd, J=2.5 and 8.0 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.43 (d, J=9.0 Hz, 2H), 7.62 (d, J=3.0 Hz, 1H), 7.83 (s, 1H). HFABMS m/z 394.2012 (calc for C24H27NO4, MH+, 394.2018).
R1=7-OCH2CH2CH2C(O)morpholine; R2=4′-OMe: yield 92%, mp 128-31° C., 1H NMR (500 MHz, CDCl3): δ 2.14-2.19 (m, 2H), 2.53 (t, J=6.5 Hz, 2H), 2.88 (t, J=6.5 Hz, 2H), 3.10-3.13 (m, 2H), 3.49 (t, J=5.0 Hz, 2H), 3.62-3.68 (m, 6H), 3.85 (s, 3H), 4.10 (t, J=6.5 Hz, 2H), 6.93-6.96 (m, 2H), 7.03-7.06 (dd, J=3.0 and 8.5 Hz, 1H), 7.16 (d, J=8.0 Hz, 1H), 7.43 (d, J=8.5 Hz, 2H), 7.60 (d, J=3.0 Hz, 1H), 7.83 (s, 1H). HFABMS m/z 436.2119 (calc for C26H29NO5, MH+, 436.2124).
R1=7-OMe; R2=4′-SMe: yield 68%, mp 104-6° C., 1H NMR (500 MHz, CDCl3): δ 2.52 (s, 3H), 2.87-2.90 (m, 2H), 3.09-3.12 (m, 2H), 3.87 (s, 3H), 7.06-7.08 (dd, J=3.0 and 8.0 Hz, 1H), 7.16 (d, J=9.0 Hz, 1H), 7.27 (d, J=8.5 Hz, 1H), 7.38 (d, J=8.5 Hz, 1H), 7.62 (d, J=3.0 Hz, 1H), 7.81 (s, 1H). HFABMS m/z 311.1115 (calc for C19H18O2S, MH+, 311.1106).
R1=7-F; R2=4′-OMe: yield 63%, 1H NMR (500 MHz, CDCl3): δ 2.91-2.93 (m, 2H), 3.13-3.16 (m, 2H), 3.88 (s, 3H), 6.96 (d, J=9.0 Hz, 2H), 7.16-7.24 (m, 2H), 7.44 (d, J=9.0 Hz, 2H), 7.78 (dd, J1=9.0 Hz, J2=2.5 Hz, 1H), 7.86 (s, 1H).
R1=7-OMe; R2=4′-F; X═O: yield 60%, mp 120-25° C., 1H NMR (500 MHz, CDCl3): δ 3.84 (s, 3H), 5.28 (s, 2H), 6.91 (d, J=9.0 Hz, 2H), 7.10-7.16 (m, 3H), 7.29-7.32 (m, 2H), 7.44 (d, J=3.5 Hz, 1H), 7.83 (s, 1H).
R1=7-Me; R2=4′-F; X═O: yield 53%, mp 145-49° C., 1H NMR (500 MHz, CDCl3): δ 2.34 (s, 3H), 5.90 (s, 2H), 6.87 (d, J=8.0 Hz, 1H), 7.11-7.16 (m, 2H), 7.28-7.31 (m, 3H), 7.80-7.81 (m, 1H).
R1=7-OMe; R2=4′-OMe; X═O: Prepared utilizing the acidic conditions. yield 62%, 1H NMR (500 MHz, DMSO-d6): δ 3.79 (s, 3H), 3.83 (s, 3H), 5.38 (d, 2H, J=2.0 Hz), 7.02 (d, 1H, J=8.5 Hz), 7.05-7.08 (m, 2H), 7.21 (dd, 1H, J=3.3, 9.3 Hz), 7.30 (d, 1H, J=3.5 Hz), 7.43-7.46 (m, 2H), 7.72 (1H, br s).
R1=7-F; R2=4′-OMe; X═O: 1H NMR (500 MHz, DMSO-d6): δ 3.83 (s, 3H), 5.43 (d, 2H, J=2.0 Hz), 7.05-7.08 (m, 2H), 7.13 (dd, 1H, J=4.5, 9.0 Hz), 7.44-7.47 (m, 2H), 7.49 (dd, 1H, J=3.5, 9.0 Hz), 7.55 (dd, 1H, J=3.3, 8.3 Hz), 7.74 (1H, br s).
R1=7-OMe; R2=4′-OMe; X═S: 1H NMR (500 MHz, DMSO-d6): δ 3.85 (s, 3H), 3.86 (s, 3H), 4.13 (d, 2H, J=1.0 Hz), 6.95-6.98 (m, 2H), 7.01 (dd, 1H, J=2.8, 8.8 Hz), 7.22 (d, 1H, J=9.0 Hz), 7.37-7.40 (m, 2H), 7.69 (d, 1H, J=3.0 Hz), 7.76 (s, 1H).
Combustion Analyses
HPLC Methods and Purity Assessment
General HPLC information: Instrument: Agilent 1100. Column: Discovery® C18, 25 cm×4.6 mm, 5 μm. Inection volume: 5-10 μL. Sample concentration: 1-2 mg/mL in 100% acetonitrile. λ: 254 nm
HPLC method A: Elution solvent: 66% methanol; 34% water. Elution rate: 0.75 mL/min.
HPLC method B: Elution solvent: 50% acetonitrile; 50% water. Elution rate: 1.00 mL/min.
The following Nec-3-like compounds were synthesized:
The following synthetic scheme was used to generate compounds (216) and (217):
In general, any Nec-3 compound can be modified by the addition of a methyl group, or other alkyl or heteroalkyl group, to position C3a.
Other EmbodimentsAll publications, patents, and patent applications mentioned in the above specification are hereby incorporated by reference. Various modifications and variations of the described method and system of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention that are obvious to those skilled in the art are intended to be within the scope of the invention. Other embodiments are in the claims.
Claims
1. A Nec-3 compound of formula (VI): or a stereoisomer thereof, or a pharmaceutically acceptable salt thereof, wherein
- Z is CH2;
- the bond indicated by (a) can be a single or double bond;
- R1 is hydrogen, alkanoyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; C7-16 aralkyl; amino; aminoalkyl of one to six carbon atoms; C6 or C10 aryl; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9 heterocyclyl; C2-9 (heterocyclyl)oxy; C3-10 (heterocyclyl)oyl; hydroxyl; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6 or C10 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
- each of R2, R4, R7, R8, R10, and R11, independently, represents hydrogen, alkanoyl of one to six carbon atoms; alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; C7-16 aralkyl; amino; aminoalkyl of one to six carbon atoms; C6 or C10 aryl; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9 heterocyclyl; C2-9 (heterocyclyl)oxy; C3-10 (heterocyclyl)oyl; hydroxyl; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6 or C10 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
- R3 is alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; halo; or amino;
- R9 is alkyl of one to six carbon atoms or alkoxy of one to six carbon atoms;
- R5 is C(O)R13, C(S)R13, C(O)OR13, C(O)NR13R14, C(S)NR13R14, C(NH)R13, or S(O2)R13, wherein each of R13 and R14, independently, represents hydrogen, an optionally substituted C1-12 alkyl, an optionally substituted C1-7 heteroalkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15 heteroaralkyl; and
- R6 is hydrogen, C1-6 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C7-16 aralkyl, an optionally substituted C2-9 heteroaryl, or an optionally substituted C2-15 heteroaralkyl, wherein when each of R1, R2, R4, and R6 through R11 is selected from the group consisting of hydrogen, amino, halide, and hydroxyl and Z is CH2, R3 is not hydroxyl or methoxyl.
2. The Nec-3 compound of claim 1, wherein said Nec-3 compound is a substantially pure (3R,3aR)-rel isomer,
- or a pharmaceutically acceptable salt thereof.
3. The Nec-3 compound of claim 2, wherein R5 is —C(O)R13, and R13 is substituted C1-12 alkyl,
- or a pharmaceutically acceptable salt thereof.
4. The Nec-3 compound of claim 2, wherein said Nec-3 compound is a substantially pure (3R,3aR)-enantiomer,
- or a pharmaceutically acceptable salt thereof.
5. The Nec-3 compound of claim 2, wherein said Nec-3 compound is a substantially pure (3S,3aS)-enantiomer,
- or a pharmaceutically acceptable salt thereof.
6. The Nec-3 compound of claim 2, wherein
- the bond indicated by (a) is a double bond; Z is CH2; and
- each of R1, R2, R4, R6, R7, R10, and R11, independently, represents hydrogen,
- or a pharmaceutically acceptable salt thereof.
7. The Nec-3 compound of claim 6, wherein
- R8 is H,
- or a pharmaceutically acceptable salt thereof.
8. The Nec-3 compound of claim 2, wherein
- R3 represents methoxyl; R5 represents C(O)CH2OH; and R9 represents alkoxy of one to six carbon atoms,
- a pharmaceutically acceptable salt thereof.
9. A Nec-3 compound of formula (VI): or a stereoisomer thereof, or a pharmaceutically acceptable salt thereof wherein
- said Nec-3 compound is a substantially pure (3R,3aR)-rel isomer;
- Z is CH2CH2;
- the bond indicated by (a) can be a single or double bond;
- each of R1, R2, R4, R7, R8, R10, and R11, independently, represents hydrogen, alkanoyl of one to six carbon atoms; alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; alkoxyalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; alkylsulfinyl of one to six carbon atoms; alkylsulfinylalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; alkylsulfonyl of one to six carbon atoms; alkylsulfonylalkyl, wherein the alkyl and alkylene groups are independently of one to six carbon atoms; C7-16 aralkyl; amino; aminoalkyl of one to six carbon atoms; C6 or C10 aryl; C7 or C11 aryloyl; azido; azidoalkyl of one to six carbon atoms; carboxaldehyde; (carboxaldehyde)alkyl, wherein the alkylene group is of one to six carbon atoms; cycloalkyl of three to eight carbon atoms; cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms and the alkylene group is of one to ten carbon atoms; halo; haloalkyl of one to six carbon atoms; C2-9 heterocyclyl; C2-9 (heterocyclyl)oxy; C3-10 (heterocyclyl)oyl; hydroxyl; hydroxyalkyl of one to six carbon atoms; nitro; nitroalkyl of one to six carbon atoms; N-protected amino; N-protected aminoalkyl, wherein the alkylene group is of one to six carbon atoms; thioalkoxy of one to six carbon atoms; thioalkoxyalkyl, wherein the alkyl and alkylene groups are independently of from one to six carbon atoms; —(CH2)qCO2RA, wherein q is zero to four and RA is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qCONRBRC, wherein RB and RC are independently selected from the group consisting of (a) hydrogen, (b) C1-6 alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2RD, wherein RD is selected from the group consisting of (a) C1-6 alkyl, (b) C6 or C10 aryl and (c) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qSO2NRERF, wherein RE and RF are independently selected from the group consisting of (a) hydrogen, (b) alkyl, (c) C6 or C10 aryl and (d) arylalkyl, wherein the alkylene group is of one to six carbon atoms; —(CH2)qNRGRH, wherein RG and RH are independently selected from the group consisting of (a) hydrogen; (b) an N-protecting group; (c) alkyl of one to six carbon atoms; (d) alkenyl of two to six carbon atoms; (e) alkynyl of two to six carbon atoms; (f) C6 or C10 aryl; (g) arylalkyl, wherein the alkylene group is of one to six carbon atoms; (h) cycloalkyl of three to eight carbon atoms and (i) cycloalkylalkyl, wherein the cycloalkyl group is of three to eight carbon atoms, and the alkylene group is of one to ten carbon atoms, with the proviso that no two groups are bound to the nitrogen atom through a carbonyl group or a sulfonyl group; C1-6 perfluoroalkyl; C1-6 perfluoroalkoxy; C6 or C10 aryloxy; C3-8 cycloalkoxy; C9-14 cycloalkylalkoxy; or C7-16 arylalkoxy;
- R3 is alkoxy of one to six carbon atoms; halo; or amino;
- R9 is alkyl of one to six carbon atoms; alkoxy of one to six carbon atoms; or halo;
- R5 is C(O)R13, C(S)R13, C(O)OR13, C(O)NR13R14, C(S)NR13R14, C(NH)R13, or S(O2)R13, wherein each of R13 and R14, independently, represents hydrogen, an optionally substituted C1-12 alkyl, an optionally substituted C1-7 heteroalkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C2-9 heteroaryl, an optionally substituted C7-16 aralkyl, or an optionally substituted C2-15heteroaralkyl; and
- R6 is hydrogen, C1-6 alkyl, an optionally substituted C6 or C10 aryl, an optionally substituted C7-16 aralkyl, an optionally substituted C2-9 heteroaryl, or an optionally substituted C2-15heteroaralkyl, wherein when each of R1, R2, R4, and R6 through R11 is selected from the group consisting of hydrogen, amino, halide, and hydroxyl and Z is CH2, R3 is not hydroxyl or methoxyl.
10. The Nec-3 compound of claim 9, wherein said Nec-3 compound is a substantially pure (3R,3aR)-enantiomer,
- or a pharmaceutically acceptable salt thereof.
11. The Nec-3 compound of claim 9, wherein said Nec-3 compound is a substantially pure (3S,3aS)-enantiomer,
- or a pharmaceutically acceptable salt thereof.
12. A pharmaceutical composition comprising:
- (i) the compound of claim 1, or a stereoisomer thereof, or a pharmaceutically acceptable salt thereof; and
- (ii) a pharmaceutically acceptable excipient.
13. A pharmaceutical composition comprising:
- (i) the compound of claim 2, or a pharmaceutically acceptable salt thereof; and
- (ii) a pharmaceutically acceptable excipient.
14. The pharmaceutical composition of claim 13, wherein
- the bond indicated by (a) is a double bond; Z is CH2; and
- each of R1, R2, R4, R6, R7, R10, and R11, independently, represents hydrogen,
- or a pharmaceutically acceptable salt thereof.
15. The pharmaceutical composition of claim 14, wherein
- R8 is H,
- or a pharmaceutically acceptable salt thereof.
16. The pharmaceutical composition of claim 13, wherein
- R3 represents methoxyl; R5 represents C(O)CH2OH; and R9 represents alkoxy of one to six carbon atoms,
- a pharmaceutically acceptable salt thereof.
17. The pharmaceutical composition of claim 13, wherein said compound is selected from the group consisting of: Cmpd C3/ No. Z R3 R7 R8 R9 R13 C3a* 25 CH2 OCH3 H H OCH3 H cis 26 CH2 OCH3 H H OCH3 H trans 39 CH2 OCH3 H H OCH3 CH2CH3 cis 42 CH2 OCH3 H H OCH3 CH2Cl cis 46 CH2 OCH3 H H OCH3 CH2N(CH3)2 cis 47 CH2 OCH3 H H OCH3 CH2OAc cis 71 CH2 OCH3 H H OCH3 CF3 cis 79 CH2 OCH3 H H OCH3 CH2CH3 trans 80 CH2 OCH3 H H OCH3 CH2OAc trans 85 CH2 OCH3 H H OCH3 (CH2)3CO2CH3 cis 86 CH2 OCH3 H H OCH3 (CH2)3CO2H cis 87 CH2 OCH3 H H OCH3 (CH2)3C(O)-morpholine cis 88 CH2 OCH3 H H OCH3 CH2NHCH3 cis 92 CH2 OCH3 H H OCH3 CH2OCH3 cis 93 CH2 OCH3 H H OCH3 OH cis 94 CH2 OCH3 H H OCH3 (CH2)8C(O)-morpholine cis 97 CH2 OCH3 H H OCH3 CF3 cis 98 CH2 OCH3 H H OCH3 C(O)CH3 cis 99 CH2 OCH3 H H OCH3 (CH2)3C(O)—NH(CH2)3CO2Et cis 138 CH2 OCH3 H H OCH3 (CH2)3CO2CH3 trans wherein R5 is as follows Cmpd R 147 HC=O 148 C(=O)Et 150 C(=O)CH2OAc 151 C(=O)CH2OH 158 C(=O)CH2OMe 159 C(=O)CF3 153 C(=O)NH2 152 C(=S)NH2 154 C(=S)NHMe C3/C3a No. stereochemistry R13 214 trans CH2OH 215 cis CH2OH
- (a) a Nec-3 compound wherein R1, R2, R4, R6, R10, and R11 are H, R5 is —C(O)R13, the bond indicated by (a) is a double bond, and Z, R3, R7, R8, R9, and R13 are as follows:
- (b) a Nec-3 compound selected from the group consisting of
- (c) a Nec-3 compound having the following structure,
- and
- (d) a Nec-3 compound having the following structure,
- wherein R13 and the relative C3/C3a stereochemistry are as follows
- or a pharmaceutically acceptable salt thereof.
18. The pharmaceutical composition of claim 17, wherein said compound is selected from compounds (147), (148), (150), (151), (154), (158), and (159),
- or a pharmaceutically acceptable salt thereof.
19. A pharmaceutical composition comprising:
- (i) the compound of claim 9, or a pharmaceutically acceptable salt thereof; and
- (ii) a pharmaceutically acceptable excipient.
Type: Application
Filed: Oct 31, 2012
Publication Date: Jun 20, 2013
Inventors: Junying Yuan (Newton, MA), Alexei Degterev (Brookline, MA), Junichi Hitomi (Indianapolis, IN), Gregory D. Cuny (Houston, TX), Prakash Jagtap (North Andover, MA)
Application Number: 13/665,263
International Classification: C07D 231/54 (20060101); C07D 495/04 (20060101); C07D 491/052 (20060101);
