CLONED GLUCAGON-LIKE PEPTIDE-2 RECEPTORS
The invention relates to nucleotides and amino acid sequences encoding Glucagon-like peptide-2 receptors, recombinant host cells transformed with such nucleotides, and methods of using the same in drug screening and related applications.
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This application is a divisional application of U.S. patent application Ser. No. 12/272,615 filed Nov. 17, 2008, now U.S. Pat. No. 8,592,553, which is a divisional application of U.S. patent application Ser. No. 09/331,127, filed Oct. 19, 1999, now U.S. Pat. No. 7,473,537, which is a national stage entry of PCT/CA97/00969, filed Dec. 15, 1997, which claims priority under PCT Article 8 to each of the following: U.S. patent application Ser. No. 08/845,546, filed Apr. 24, 1997, issued as U.S. Pat. No. 6,077,949, U.S. patent application Ser. No. 08/767,224, filed Dec. 13, 1996, now abandoned, and U.S. patent application Ser. No. 08/787,721, filed Jan. 24, 1997, now abandoned.
FIELD OF THE INVENTIONThe invention is in the field of molecular biology. It relates, more particularly, to cloned glucagon-like peptide 2 receptors and their use in drug screening and related applications.
BACKGROUND TO THE INVENTIONGlucagon-like peptide-2 (GLP-2) is a 33 amino acid peptide, which is expressed in a tissue determined fashion from the pleiotrophic glucagon gene and is highly related in terms of amino acid sequence to glucagon and Glucagon-like peptide-1 (GLP-1). Mammalian forms of GLP-2 are highly conserved: for example, the human and degu (a south American rodent) forms differ by one and three amino acids respectively from rat GLP-2. Recently it was demonstrated that GLP-2 is an intestinotrophic peptide hormone; when given exogenously, GLP-2 can produce a marked increase in the proliferation of small intestinal epithelium of the test mice (Drucker et al, (1996) PNAS, 93:7911-7961). More recently, GLP-2 has been shown to increase D-Glucose maximal transport rate across the intestinal basolateral membrane (Cheeseman and Tseng: American Journal of Physiology (1996) 271:G477-G482).
To accelerate research into gastrointestinal biology and development of drugs useful in the treatment of various medical conditions including gastrointestinal disorders, it would be useful to provide the receptor through which the effects of GLP-2 are mediated.
SUMMARY OF THE INVENTIONThe GLP-2 receptor has now been cloned and characterized. Accordingly, the present invention provides an isolated polynucleotide encoding a GLP-2 receptor, particularly including mammalian forms and homologs thereof such as, in specific embodiments, the rat and human forms. In aspects of the invention, polynucleotide coding for a GLP-2 receptor is utilized for expression to obtain functional receptor protein and, in optionally labelled form, for further gene cloning to identify structurally related receptor proteins. In related aspects of the invention, anti-sense versions of GLP-2 receptor-encoding polynucleotides and fragments thereof are obtained and utilized to regulate GLP-2 receptor expression.
In another of its aspects, the invention provides GLP-2 receptor as a product of recombinant production in a cellular host. In related aspects, there are provided recombinant host cells that express GLP-2 receptor, as well as receptor-bearing membranes derived from such cells, and expression constructs in which polynucleotide coding for the GLP-2 receptor is linked to expression controls functional in the selected host cell.
In another of its aspects, the GLP-2 receptor is utilized in a chemicals screening program to identify GLP-2 receptor ligands. This method comprises the steps of incubating the candidate ligand with a GLP-2 receptor-producing cell of the present invention, or with a membrane preparation derived therefrom, and then measuring whether, or the extent to which, binding has occurred. Using cells that express a GLP-2 receptor coupled functionally to a second messenger system, such binding can be determined indirectly, to reveal ligand against activity, by detecting an appropriate reporter.
In another of its aspects, the invention provides antibodies directed to the GLP-2 receptor, for use for example in diagnostic procedures.
The invention is further described with reference to the following drawings in which:
The invention relates in one respect to polynucleotides, in their isolated form, that code for GLP-2 receptors. As used herein “isolated” means separated from polynucleotides that encode other proteins. In the context of polynucleotide libraries, for instance, GLP-2 receptor-encoding polynucleotide is considered “isolated” when it has been selected, and hence removed from association with other polynucleotides within the library. Such polynucleotides may be in the form of RNA, or in the form of DNA including cDNA, genomic DNA and synthetic DNA. The GLP-2 receptors are characterized by structural features common to the G-protein coupled receptor class, including seven transmembrane regions, and by the functional properties of binding GLP-2 peptide selectively, i.e., preferentially, to GLP-1 peptide. Such selective binding is revealed as a statistically significant greater binding affinity of GLP-2 than of GLP-1, in the context of the assay chosen to measure such affinity. When expressed functionally in a host cell, i.e., in operable linkage with a responsive second messenger system the GLP-2 receptors are capable further of responding to GLP-2 binding by signal transduction. In this regard, the activity of a G-protein coupled receptor such as a GLP-2 receptor can be measured using any of a variety of appropriate functional assays in which activation of the receptor results in detectable change in the level of some second messenger system, such as adenylate cyclase, calcium mobilization, inositol phospholipid hydrolysis products or guanylyl cyclase.
With reference to
In one embodiment of the invention, the GLP-2 receptor is a rat GLP-2 receptor having the amino acid sequence of SEQ ID NO:2. In a specific embodiment of the invention, this rat GLP-2 receptor is encoded by the polynucleotide sequence of SEQ ID NO: 1. This particular GLP-2 receptor-encoding polynucleotide, also referred to as the WBR gene, is a cDNA of rat origin. The expression product of this polynucleotide incorporates the mature form of the GLP-2 receptor, and additionally incorporates a secretion signal that is removed before membrane integration of the mature GLP-2 receptor product. Such a signal sequence may be naturally present on the polypeptides or replaced with a functionally equivalent secretion signal which is heterologous to the GLP-2 receptor. The replacement secretion signal chosen will depend on the expression system being used and will typically, but not essentially be endogenous to the chosen host and, also typically but not essentially, be homologous to the chosen expression controlling sequences.
The expressed rat GLP-2 receptor product (
In a related embodiment, the GLP-2 receptor is of human origin (SEQ ID NO: 9) and incorporates the human GLP-2 receptor fragment having the amino acids of SEQ ID NO: 10.
This polynucleotide was isolated using the rat cDNA sequence as generally described below and as detailed in Example 3. In a further related embodiment of the invention, the cDNA is of human origin (SEQ ID NO: 11) and encodes the full length human GLP-2 receptor having residues 67-533 of the amino acid sequence of SEQ 11) NO: 12. The human GLP-2 receptor precursor product (
In another embodiment, the invention provides GLP-2 receptor polynucleotide sequences and their unique sequence fragments as a tool useful to identify and isolate structurally related polynucleotides. At low stringency hybridization conditions, for instance, polynucleotide libraries can be probed to identify genes that are at least about 50% homologous to the GLP-2 receptor gene. To facilitate isolation of rat GLP-2 receptor gene homologs that are also GLP-2 receptor-encoding, stringency conditions are desirably enhanced to identify homologs having at least 80% (medium stringency) sequence identity homology at the polynucleotide level to receptor gene. More desirably the WBR gene homologs are 90% identical, (high stringency) and most desirably they have at least 95% sequence (high stringency) identity when compared to WBR. Preferably, the isolated WBR homologs are characterized in that (1) they can be amplified using the PCR primers of SEQ ID NO: 3 and SEQ ID NO: 4 and (2) they bind to the probe of SEQ ID NO: 5 under high stringency conditions.
Still more preferably, the isolated homologs are those which bind, under conditions of high stringency, with consensus regions of the GLP-2 receptor-encoding polynucleotides, i.e., those regions of the rat and human GLP-2 receptor-encoding polynucleotides which are identical and, relative to GLP-1 receptor-encoding sequences, are also unique to the GLP-2 receptor-encoding polynucleotides. Alignment of this nature reveals a number of consensus regions for GLP-2: for example nucleotides spanning from 1460-1786. In one embodiment of the invention, these sequences, and their complements, constitute polynucleotide fragments useful, as just described for the intact gene, to identify polynucleotides structurally related to the human and rat GLP-2 receptor embodiments of the invention.
In a related embodiment, the cDNA sequence or the unique fragments of the GLP-2 receptor, most preferably of the human GLP-2 receptor, can be used in appropriately labelled form, e.g., p32 labelled, for diagnosis of conditions associated with aberrant expression of the GLP-2 receptor. For example, over or under expression or expression in an inappropriate tissue. In one embodiment appropriate PCR primers (e.g., regions unique to the GLP-2 receptor but conserved between species) can be used diagnostically to identify aberrant structure or levels of GLP-2 receptor mRNA, e.g., associated with inherited or acquired disease states.
It has been found that the human GLP-2 receptor is located on chromosome 17P13. Thus, in a further embodiment, the invention provides expression products from this locus that hybridize with the human GLP-2 receptor polynucleotide (
As source material to isolate GLP-2 receptor-encoding homologs of the rat GLP-2 receptor-encoding polynucleotide gene, it is desirable but not necessary to use libraries of fetal or mature hypothalamal, jejunal, hindbrain or stomach tissue obtained from the vertebrate species targeted for receptor isolation. The invention accordingly includes not only the rat GLP-2 receptor-encoding polynucleotide of SEQ ID NO:1, but structural homologs thereof and particularly those that code for proteins having GLP-2 receptor properties. As exemplified hereinbelow, the WBR gene has been used successfully as a starting material to clone the human homolog of the rat GLP-2 receptor. Thus, the invention provides polynucleotides that encode GLP-2 receptors, including rat GLP-2 receptor and vertebrate homologs, particularly mammalian homologs thereof including human homologs, as well as synthetic variants of these.
It will be appreciated that such homologs can also be identified in libraries by screening, as noted, with fragments of the rat receptor gene or the human homolog, which incorporate at least 15 nucleotides, and preferably at least 25 nucleotides. With reference to SEQ ID NO: 1 and the nucleotide numbering appearing thereon, suitable nucleotide fragments include in addition to the consensus nucleotide fragments noted above, those corresponding in sequence to the extracellular GLP-2 binding domain, and the stipulated transmembrane regions and the C-terminal portion of the receptor.
Technically, the identification of GLP-2 receptor genes can be achieved by applying standard hybridization or amplification techniques to a tissue-derived polynucleotide library. A wide variety of such libraries are commercially available. Where construction of a cDNA library is necessary, established techniques are applied. For example, isolation of such a WBR homolog typically will entail extraction of total messenger RNA from a fresh source of tissue, such as hypothalamal, jejunal, stomach or hindbrain tissue, preferably hypothalamal tissue or cell lines derived from these tissues, followed by conversion of message to cDNA and formation of a library in for example a bacterial plasmid, more typically a bacteriophage.
Such bacteriophage harboring fragments of the DNA are typically grown by plating on a lawn of susceptible E. coli bacteria, such that individual phage plaques or colonies can be isolated. The DNA carried by the phage colony is then typically immobilized on a nitro-cellulose or nylon-based hybridization membrane, and then hybridized, under carefully controlled conditions, to a radioactively (or otherwise) labelled probe sequence to identify the particular phage colony carrying the fragment of DNA of particular interest, in this case a rat or human GLP-2 homolog. The phage carrying the particular gene of interest is then purified away from all other phages from the library, in order that the foreign gene may be more easily characterized. Typically, the gene or a portion thereof is then isolated by subcloning into a plasmidic vector for convenience, especially with respect to the full determination of its DNA sequence.
As an alternative to obtaining GLP-2 encoding DNA directly as a DNA insert from an available or a constructed cDNA library, in light of the present disclosure it can be synthesized de novo using established techniques of gene synthesis. Because of the length of the GLP-2 receptor-encoding DNAs of SEQ ID NO: 1, SEQ ID NO: 9 and SEQ ID NO: 11, application of automated synthesis may require staged gene construction, in which regions of the gene up to about 300 nucleotides in length are synthesized individually and then ligated in correct succession for final assembly. Individually synthesized gene regions can be amplified by PCR. The application of automated synthesis may typically be applied by synthesizing specific regions or fragments of the gene and ligating them, usually via designed overlaps, in correct succession to form the final gene sequence. In this case, the longer the oligonucleotide building blocks, the fewer will be the ligations needed, resulting in greater ease of assembly.
The application of automated gene synthesis techniques provides an opportunity for generating sequence variants of the naturally occurring GLP-2 receptor gene. It will be appreciated, for example, that polynucleotides coding for the GLP-2 receptor herein described can be generated by substituting one or more synonymous codons for those represented in the naturally occurring polynucleotide sequences herein provided and such “synonymous codon equivalents” are within the scope of the present invention. In addition, polynucleotides coding for synthetic variants of the GLP-2 receptor herein provided can be generated which incorporate from 1 to 20, e.g., from 1 to 5, amino acid substitutions, or deletions or additions. Preferred sites for such a modification include areas of non homology between the rat and human sequence, for example amino acid ranges 70-92, 328-350 and 475-504. Since it will be desirable typically to retain the natural ligand binding profile of the receptor for screening purposes, it is desirable to limit amino acid substitutions, for example to the so-called conservative replacements in which amino acids of similar charge are substituted (
Having obtained GLP-2 receptor encoding polynucleotide, GLP-2 receptor can be produced in a number of ways, including in vitro transcription and via incorporation of the DNA into a suitable expression vector and expression in the appropriate host, for example in a bacterium such as E. coli, in yeast or in insect or in a mammalian cell. A variety of gene expression systems have been adapted for use with these hosts and are now commercially available, and any one of these systems can be selected to drive expression of the GLP-2 receptor-encoding DNA. Expression vectors may be selected to provide transformed cell lines that express the receptor-encoding DNA either transiently or in a stable manner. For transient expression, host cells are typically transformed with an expression vector harboring an origin of replication functional in a mammalian cell. For stable expression, such replication origins are unnecessary, but the vectors will typically harbor a gene coding for a product that confers on the transformants a survival advantage, to enable their selection such as a gene coding for neomycin resistance in which case the transformants are plated in medium supplemented with neomycin.
These expression systems, available typically but not exclusively in the form of plasmidic vectors, incorporate expression cassettes the functional components of which include DNA constituting expression controlling sequences and optionally also signal peptides encoding sequences, which are host-recognized and enable expression of the receptor-encoding DNA when linked 5′ thereof. The systems further incorporate DNA sequences which terminate expression when linked 3′ of the receptor-encoding region. Thus, for expression in the selected mammalian cell host, there is generated a recombinant DNA expression construct in which the receptor-encoding DNA is linked with expression controlling DNA sequences recognized by the host, and which include a region 5′ of the receptor-encoding DNA to drive expression, and a 3′ region to terminate expression.
Included among the various recombinant DNA expression systems that can be used to achieve mammalian cell expression of the receptor-encoding DNA are those that exploit promoters of viruses that infect mammalian cells, such as the promoter from the cytomegalovirus (CMV), the Rous sarcoma virus (RSV), simian virus (SV40), murine mammary tumor virus (MMTV) and others. Also useful to drive expression are promoters such as the LTR of retroviruses, insect cell promoters such as those regulated by temperature, and isolated from Drosophila, as well as mammalian gene promoters such as those regulated by heavy metals i.e. the metallothionein gene promoter, and other steroid-inducible promoters.
In another of its aspects, the invention provides cells or membranes derived therefrom which are adapted by genetic alteration for use, for example, in identifying GLP-2 receptor ligands. In preferred embodiments, such cells are adapted genetically by the insertion of polynucleotide coding for a GLP-2 receptor. In particularly preferred embodiments, such cells incorporate a recombinant DNA molecule, e.g. an expression construct/vector, in which DNA coding for the GLP-2 receptor and expression controlling elements functional in the host are linked operably to drive expression of the DNA. For incorporation of receptor into cell plasma membranes, the vector can, if desired, be designed to provide a suitable heterologous signal peptide sequence to substitute for the signal peptide encoded naturally within the receptor DNA.
Suitable GLP-2 producing cells include the Chinese hamster ovary (CHO) cells for example of K1 lineage (ATCC CCL 61) including the ProS variant (ATCC CRL 1281); the fibroblast-like cells derived from SV40-transformed African Green monkey kidney of the CV-1 lineage (ATCC CCL 70), of the COS-1 lineage (ATCC CRL 1650) and of the COS-7 lineage (ATCC CRL 1651); murine L-cells, murine 3T3 cells (ATCC CRL 1658), murine C127 cells, human embryonic kidney cells of the 293 lineage (ATCC CRL 1573), human carcinoma cells including those of the HeLa lineage (ATCC CCL 2), and neuroblastoma cells of the lines IMR-32 (ATCC CCL 127), SK-N-MC (ATCC HTB 10) and SK-N-SH (ATCC HTB 11).
For use in ligand screening assays, cell lines expressing the receptor-encoding DNA can be stored frozen for later use. Such assays may be performed either with intact cells, or with membrane preparations derived from such cells. The membrane preparations typically provide a more convenient substrate for the ligand binding experiments, and are therefore preferred as binding substrates. To prepare membrane preparations for screening purpose, i.e., ligand binding experiments, frozen intact cells are homogenized while in cold water suspension and a membrane pellet is collected after centrifugation. The pellet is then washed in cold water, and dialyzed to remove any endogenous GLP-2 receptor ligands that would otherwise compete for binding in the assays. The dialyzed membranes may then be used as such, or after storage in lyophilized form, in the ligand binding assays.
The binding of a candidate ligand to a selected GLP-2 receptor of the invention can be assessed typically using a predetermined amount of cell-derived membrane (measured for example by protein determination), generally from about 25 ug to 100 ug. Generally, competitive binding assays will be useful to evaluate the affinity of a test compound relative to GLP-2. This competitive binding assay is performed by incubating the membrane preparation with radiolabelled GLP-2 peptide, for example [H3] or a radioiodinated GLP-2 analog, in the presence of unlabelled test compound added at varying concentrations. Following incubation, either displaced or bound radiolabelled GLP-2 can be recovered and measured, to determine the relative binding affinities of the test compound and GLP-2 for the G12-2 receptor used as substrate. In this way, the affinities of various compounds for the GLP-2 receptor can be measured.
Alternatively, binding of a candidate ligand to a GLP-2 receptor can be assessed using a functional assay. Using this approach, for example, intact cells harvested about two days following transient transfection or after about the same period following plating of stably transfected cells can be used to assess ligand binding. In a preferred embodiment, 293 EBNA cells (Invitrogen Cat. R620-07) are stably transformed with the pREP7 vector (Invitrogen Cat. V007-50) incorporating expressibly therein a GLP-2 receptor. Thereafter, binding of an agonist (or using a competition base format an antagonist) to the receptor can be discerned by measuring the level of intracellular cAMP. Most conveniently, intracellular cAMP is measured indirectly using a reporter system, wherein an easily measurable and preferably easily quantifiable downstream event indicates the level of intracellular cAMP. For example, measuring the level of the expression of a reporter gene construct having polynucleotide sequence under the control of a promoter which is responsive to cAMP. Alternatively, measurement of intracellular calcium, released from intracellular stores in response to an increase in intracellular cAMP, can be used as an indicator of the level of intracellular cAMP, for example, by incorporating into the transformed cell a protein that fluorescences on binding to calcium. In a preferred embodiment, intracellular cAMP levels are measured using the commercially available EIA kit. An additional advantage of the functionally based approach to assessing ligand binding is that the system can be automated allowing high throughput and ultra high through screening of vast chemical libraries.
As an alternative to using cells that express receptor-encoding DNA, ligand characterization may also be performed using cells for example Xenopus oocytes, that yield functional membrane-bound receptor following introduction of messenger RNA coding for the GLP-2 receptor. In this case, the GLP-2 receptor-encoding polynucleotide of the invention is typically subcloned into a plasmidic vector such that the introduced gene may be easily transcribed into RNA via an adjacent RNA transcription promoter supplied by the plasmidic vector, for example the T3 or T7 bacteriophage promoters. RNA is then transcribed from the inserted gene in vitro, and can then be injected into Xenopus oocytes. Each oocyte is a single cell, but is large enough to be penetrated by a fine-tipped microneedle without causing irreparable damage. Following the injection of nL volumes of an RNA solution, the oocytes are left to incubate for up to several days, whereupon the oocytes are tested for the ability to respond to a particular ligand molecule supplied in a bathing solution.
Candidate GLP-2 receptor ligands can vary widely in structure, and most suitably include proteins which are highly related to GLP-2 itself in terms of amino acid sequence. For instance, the peptides disclosed in co-pending United States patent applications WO97/39031 and WO96/32414, incorporated herein by reference, may usefully be screened for GLP-2 receptor binding activity.
In addition to naturally occurring GLP-2 receptor sequences functional chimeric, receptors, incorporating portions of the GLP-2 receptor sequence and the polynucleotides encoding them are also embodiments of the invention. Functional chimeric GLP-2 receptors are constructed by combining the extracellular receptive sequences of a GLP-2 receptor with one or more of the transmembrane and intracellular segments of a known seven transmembrane G-protein coupled receptors for test purposes. This concept was demonstrated by Kobilka et al. (1988, Science 240:1310-1316) who created a series of chimeric α2-β2 adrenergic receptors (AR) by inserting progressively greater amounts of α2-AR transmembrane sequence into β2-AR. The binding activity of known agonists changed as the molecule shifted from having more α2 than β2 conformation, and intermediate constructs demonstrated mixed specificity. The specificity for binding antagonists, however, correlated with the source of the transmembrane domain VII. The importance of transmembrane domain VII for ligand recognition was also found in chimeras utilizing two yeast α-factor receptors and is significant because the yeast receptors are classified as miscellaneous receptors. Thus, the functional role of specific domains appears to be preserved throughout the seven transmembrane G-protein coupled receptor family regardless of category.
In parallel fashion, internal segments or cytoplasmic domains from a particular GLP-2 receptor are exchanged with the analogous domains of a known seven transmembrane G-protein coupled receptor and used to identify the structural determinants responsible for coupling the receptors to trimeric G-proteins (Dohlman et al. (1991) Annu Rev Biochem 60:653-688). A chimeric receptor in which domains V, VI, and the intracellular connecting loop from β2-AR were substituted into a2-AR was shown to bind ligands with a2-AR specificity, but to stimulate adenylate cyclase in the manner of β2-AR. This demonstrates that for adrenergic-type receptors, G-protein recognition is present in domains V and VI and their connecting loop. The opposite situation was predicted and observed for a chimera in which the V->VI loop from α1-AR replaced the corresponding domain on β2-AR and the resulting receptor bound ligands with β2-AR specificity and activated G-protein-mediated phosphatidylinositol turnover in the α1-AR manner. Finally, chimeras constructed from muscarinic receptors also demonstrated that V->VI loop is the major determinant for specificity of G-protein activity.
Chimeric or modified seven transmembrane G-protein coupled receptors containing substitutions in the extracellular and transmembrane regions have shown that these portions of the receptor determine ligand binding specificity. For example, two Ser residues conserved in domain V of all adrenergic and D catecholamine receptors are necessary for potent agonist activity. These serines are believed to form hydrogen bonds with the catechol moiety of the agonists within the binding site. Similarly, an Asp residue present in domain III of all seven transmembrane G-protein coupled receptors which bind biogenic amines is believed to form an ion pair with the ligand amine group in the binding site.
Functional, cloned seven transmembrane G-protein coupled receptors are expressed in heterologous expression systems and their biological activity assessed (e.g., Marullo et al. (1988) Proc Natl Acad Sci 85:7551-7555; King et al. (1990) Science 250:121-123). One heterologous system introduces genes for a mammalian seven transmembrane G-protein coupled receptor and a mammalian G-protein into yeast cells. The seven transmembrane G-protein coupled receptor is shown to have appropriate ligand specificity and affinity and trigger appropriate biological activation—growth arrest and morphological changes—of the yeast cells.
An alternate procedure for testing chimeric receptors is based on the procedure utilizing the P2u purinergic receptor (P2u) as published by Erb et al. (1993, Proc Natl Acad Sci 90:104411-104453). Function is easily tested in cultured K562 human leukaemia cells because these cells lack P2u receptors. K562 cells are transfected with expression vectors containing either normal or chimeric P2u and loaded with fura-a, fluorescent probe for Ca++. Activation of properly assembled and functional P2u receptors with extracellular UTP or ATP mobilizes intracellular Ca++ which reacts with fura-a and is measured spectrofluormetrically. As with the seven transmembrane G-protein coupled receptors above, chimeric genes are created by combining sequences for extracellular receptive segments of any newly discovered seven transmembrane G-protein coupled receptors polypeptide with the nucleotides for the transmembrane and intracellular segments of the known P2u molecule. Bathing the transfected K562 cells in microwells containing appropriate ligands triggers binding and fluorescent activity defining effectors of the seven transmembrane G-protein coupled receptors molecule. Once ligand and function are established, the P2u system is useful for defining antagonists or inhibitors which block binding and prevent such fluorescent reactions.
In addition to using the receptor-encoding DNA to construct cell lines useful for ligand screening, expression of the DNA can according to another aspect of the invention be performed to produce fragments of the receptor in soluble form, for structure investigation, to raise antibodies and for other experimental uses. It is expected that the extracellular portion of the GLP-2 receptor contributes significantly to the binding of ligand molecule. It is therefore desirable in the first instance to facilitate the characterization of the receptor-ligand interaction by providing this extracellular ligand-binding domain in quantity and in isolated form, i.e., free from the remainder of the receptor. Such a construct has been made for the rat GLP-1 receptor, and it was shown to bind GLP-1 (Wilmen et al. (1996) FEBS LETTS, 398:43-47).
To accomplish this, the full-length GLP-2 receptor-encoding DNA may be modified by site directed mutagenesis, so as to introduce a translational stop codon into the extracellular N-terminal region, immediately before the sequence encoding the first transmembrane domain (TM1), i.e., before residue 181 of SEQ ID NO: 2 and before residue 181 of SEQ ID NO: 12. Since there will no longer be produced any transmembrane domain(s) to “anchor” the receptor into the membrane, expression of the modified gene will result in the secretion, in soluble form, of only the extracellular ligand-binding domain. Standard ligand-binding assays may then be performed to ascertain the degree of binding of a candidate compound to the extracellular domain so produced. It may of course be necessary, using site-directed mutagenesis, to produce several different versions of the extracellular regions, in order to optimize the degree of ligand binding to the isolated domains.
It will be appreciated that the production of such extracellular ligand binding domains may be accomplished in a variety of host cells. Mammalian cells such as CHO cells may be used for this purpose, the expression typically being driven by an expression promoter capable of high-level expression, for example the CMV (cytomegalovirus) promoter. Alternately, non-mammalian cells, such as insect Sf 9 (Spodoptera frugiperda) cells may be used, with the expression typically being driven by expression promoters of the baculovirus, for example the strong, late polyhedron protein promoter. Filamentous fungal expression systems may also be used to secrete large quantities of such extracellular domains of the GLP-2 receptor. Aspergillus nidulans, for example, with the expression being driven by the alcA promoter, would constitute such an acceptable system. In addition to such expression hosts, it will be further appreciated that any prokaryotic or other eukaryotic expression system capable of expressing heterologous genes or gene fragments, whether intracellularly or extracellularly would be similarly acceptable.
The availability of isolated extracellular ligand-binding domains of the receptor protein makes it feasible to determine the 3-dimensional structures of these ligand-binding regions, with or without a candidate ligand complexed thereto, by a combination of X-ray crystallographic and advanced 2D-NMR techniques. In this way, additional new candidate compounds, predicted to have the required interactions with the 3-dimensional receptor structure, can be specifically designed and tested.
With large domains, crystallography is the method of choice for structure determination of both the domain in isolation, and of the co-complex with the natural ligand (or an appropriate antagonist or agonist molecule). If a particular domain can be made small enough, for example approximately 100-130 amino acids in length, then the powerful technique of 2-D NMR can also be applied to structure determination. This enables not only the determination of the domain structure, but also provides dynamic information about the drug-receptor interaction.
For use particularly in detecting the presence and/or location, for example in intestinal tissue, the present invention also provides, in another of its aspects, labelled antibody to a GLP-2 receptor. To raise such antibodies, there may be used as immunogen either the intact, soluble receptor or an immunogenic fragment thereof, produced in a microbial or mammalian cell host as described above or by standard peptide synthesis techniques. Regions of the GLP-2 receptor particularly suitable for use as immunogenic fragments include those corresponding in sequence to an extracellular region of the receptor, or a portion of the extracellular region, such as peptides consisting of 10 or more amino acids of the 401-509 region of SEQ ID NO: 2. With regard to the human GLP-2 receptor (SEQ ID NO: 12), peptides comprising the mature extracellular domain (residues 65-180), intracellular loop 3 (resides 363-385) and the intracellular C-terminal domain (residues 442-533) may be usefully employed as immunogens for the production of antibodies to the human GLP-2 receptor.
Antibodies to the desired GLP-2 receptor or fragment immunogen are available, for polyclonal antibody production, from the blood of an animal that has been immunized with the immunogen. Alternatively, for monoclonal antibody production, immunocytes such as splenocytes can be recovered from the immunized animal and fused, using hybridoma technology, to myeloma cells. The fusion products are then screened by culturing in a selection medium, and cells producing antibody are recovered for continuous growth, and antibody recovery. Recovered antibody can then be coupled covalently to a detectable label, such as a radiolabel, enzyme label, luminescent label or the like, using linker technology established for this purpose.
Animal model systems which elucidate the physiological and behavioral roles of the GLP 2 receptor are produced by creating transgenic animals in which the activity of the GLP 2 receptor is either increased or decreased, or the amino acid sequence of the expressed GLP-2 receptor is altered, by a variety of techniques. Examples of these techniques include, but are not limited to: 1) Insertion of normal or mutant versions of DNA encoding a GLP-2 receptor, by microinjection, electroporation, retroviral transfection or other means well known to those skilled in the art, into appropriate fertilized embryos in order to produce a transgenic animal or 2) Homologous recombination of mutant or normal, human or animal versions of these genes with the native gene locus in transgenic animals to alter the regulation of expression or the structure of these GLP-2 receptor sequences. The technique of homologous recombination is well known in the art. It replaces the native gene with the inserted gene and so is useful for producing an animal that cannot express native GLP-2 receptors but does express, for example, an inserted mutant GLP-2 receptor, which has replaced the native GLP-2 receptor in the animal's genome by recombination, resulting in under expression of the transporter. Microinjection adds genes to the genome, but does not remove them, and so is useful for producing an animal which expresses its own and added GLP-2 receptors, resulting in over expression of the GLP-2 receptors.
One means available for producing a transgenic animal, with a mouse as an example, is as follows: Female mice are mated, and the resulting fertilized eggs are dissected out of their oviducts. The eggs are stored in an appropriate medium such as M2 medium. DNA or cDNA encoding a GLP-2 receptor is cesium chloride purified from a vector by methods well known in the art. Inducible promoters may be fused with the coding region of the DNA to provide an experimental means to regulate expression of the transgene. Alternatively or in addition, tissue specific regulatory elements may be fused with the coding region to permit tissue-specific expression of the trans-gene. The DNA, in an appropriately buffered solution, is put into a microinjection needle (which may be made from capillary tubing using a piper puller) and the egg to be injected is put in a depression slide. The needle is inserted into the pronucleus of the egg, and the DNA solution is injected. The injected egg is then transferred into the oviduct of a pseudopregnant mouse (a mouse stimulated by the appropriate hormones to maintain pregnancy but which is not actually pregnant), where it proceeds to the uterus, implants, and develops to term. As noted above, microinjection is not the only methods for inserting DNA into the egg cell, and is used here only for exemplary purposes.
The invention having been described above, may be better understood by referring to the following examples. The following examples are offered for the purpose of illustrating the invention and should not be interpreted as a limitation of the invention.
Example 1 Isolation of the GLP-2 ReceptorPCR-Assisted Cloning of Partial Rat and Mouse GLP-2 Receptor cDNAs
Rat Neonate Intestine cDNA library (Stratagene, La Jolla, Calif.; Cat. 936508) and Mouse Jejunum first strand cDNA was prepared. Degenerate primers M-2F/S (SEQ ID NO: 3) and M-7R/S (SEQ ID NO: 4) were used to amplify a partial fragment of the rat GLP-2 receptor from the Rat Neonate Intestine cDNA library and of the mouse GLP-2 receptor from Mouse Jejunum template. The protocol is described below:
Degenerate PCR:
6 μl 10× VENT buffer from New England Biolabs
6 μl 2.5 μM each stock dATP, dCTP, dGTP and dTTP
4 μl rat neonate intestine cDNA (1:10 dilution)
2 μl (10 units) Amplitaq DNA polymerase (Perkin Elmer)
36 μl ddH2O.
Reaction conditions: 35 cycles at 94° C., 2 min.; 94° C., 1 min.; 53° C., 30 sec.; 72° C., 1 min.
The predominant PCR product was a 303 base pair (bp) DNA fragment. 30 μl samples of the above PCR were purified using the QIAGEN PCR purification kit and eluted in 30 μl ddH2O. The resulting product was then re-amplified using the same degenerate PCR conditions, with the exception only of 31 cycles at 94° C.
The predominant product at 303 base pair (bp) was cut out and purified using QIAGEN QIAquick gel purification protocol into 30 μl ddH2O. The resulting product was then re-amplified using the same degenerate PCR conditions, with the exception only of 31 cycles at 94° C.
Next, double digest (Xba I and Xho I) was done on the entire reamplified PCR reaction as follows: 28 μl DNA; 16 μl 10× One-Phor-All buffer (Pharmacia); 2 μl (40 units) Xba I enzyme (Pharmacia); 2 μl (40 units) Xho I enzyme (Pharmacia); and 30 μl ddH2O.
The samples were digested 4 hours in 37° C. water block heater, brought up to 100 μl volume with ddH2O (sterile) and purified by (1) equal amount (100 μl) chloroform extraction; (2) weekend precipitation with 2 volumes ethanol/10 volumes 3M sodium acetate; (3) lx wash with 70% EtOH; and (4) resuspension in 10 μl 1×TE (pH 8.0).
pBluescript clone 5HT1F#9 was next digested with Xba I and Xho I as follows:
10 μl DNA (pBluescript clone 5HT1F#9)
5 μl 10×NEBuffer 2 (New England Biolabs)3 μl (1:20 dilution=3 units) Xba I (New England Biolabs)
3 μl (1:20 dilution=3 units) Xho I (New England Biolabs)
24 μl ddH2O.
The sample was digested for 3 hours in 37 C water block heater, heat-inactivated at 65° C. for 20 min and purified using GeneCleanII kit from BIO 101. Aliquots of the PCR reactions were cloned into the above pBluescript plasmid vector using T4 DNA ligase kit (New England Biolabs) and transformed into Epicurean Coli XL-2 Blue MRF′ Ultracompetent cells (Stratagene). The transformation was plated onto 2×YT+AMP plates and single colonies were picked. DNA minipreps were made using QIAGEN QIA prep 8 miniprep kit and the sequences of the fragments were determined using ABI system. Novel sequences were identified containing a partial fragment of the rat and mouse GLP-2 receptor sequence.
Cloning of cDNA with complete GLP-2 receptor coding region was achieved as follows: First, cDNA libraries from the following three tissues were used for screening,
1. Rat Hypothalamus (RHT) 2. Rat Hind Brain (RHB) 3. Rat Duodenum and Jejunum (RDJ)The three cDNA libraries were prepared by priming with random primer and subcloning unidirectionally into Hind III and Not I sites of pcDNA3.
Next, the three cDNA libraries were homology screened by a degenerate oligo C4-4 [5′-AACTACATCCACMKGMAYCTGTTYVYGTCBTTCATSCT-3′] (SEQ ID NO: 5) by colony lifts and filter hybridization. The following hybridization conditions were employed: 5×SSPE (1×SSPE is 0.18M NaCL, 10 mM NaH2PO4 (pH 7.4), 10 mM EDTA (pH 7.4)) and 5×Denharts solution (1% Ficoll, 1% Polyvinylpyrrolidone, 1% BSA); 25 mg/ml salmon sperm DNA.
Filters were hybridized at 50° C. overnight. Then the filters were washed 2 times in 2×SSPE and 1% SDS at room temperature for 30 min, 2 times in 2×SSPE and 1% SDS at 50° C. for 20 min per wash, and finally two times in 1×SSPE and 0.5% SDS. Positive clones were identified by autoradiography. A plug of 1 cm2 surrounding the positive clone was removed from the plate and placed in 1 ml of 2×YT+20% Glycerol, vortexed and was frozen at −80° C.
Plasmid DNA from positive plugs was prepared as follows: 100 ml of bacterial culture of each positive plug was grown on an agar plate. The bacterial cells were scraped and resuspended in 1 ml of 2×YT medium+20% Glycerol. Bacterial pellet from the 250 ml of bacterial resuspension was resuspended in 150 ml of Solution I (50 mM Glucose, 10 mM Tris-HCl, 1 mM EDTA), lyse in Solution II (0.2M NAOH, 1% SDS), neutralized with ice cold Solution III (Potassium acetate; 4 vol. of 5M potassium acetate+1 vol. of 10M acetic acid). After pelleting bacterial DNA, 340 ml isopropanol was added to the supernatant. This was centrifuged at max for 15 min. The pellet was resuspended in TE+20 mgml RNase, incubated at 37 C for 30 minutes and precipitated with isopropanol+0.2M potassium acetate. After centrifugation, the pellet was washed with 70% alcohol, allowed to air dry and resuspended in TE.
Plasmid DNA from 2777-clone pools of rat hypothalamus cDNA library RHT cDNA library was next exploited as follows: Two primers were designed from an area of the PCR-cloned GLP-2 receptor cDNA sequence that did not have identity to known receptors of the gene family. The two primers P23-R1 and P23-F1 amplified a 196 bp fragment only from novel clone DNA but not with GLP-1 receptor cDNA or PACAP receptor cDNA. The Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842) was used under the following conditions:
2 μl of 10× Expand™ Buffer 12.8 μl of 2.5 mM dNTP mix
0.3 μl of Expand PCR enzyme (1 unit)
12.7 μl water
Reaction conditions: 32 cycles at 93° C., 40 sec; (cycles) 58° C., 40 sec; (cycles) 68° C., 40 sec
DNAs from each positive plug or pool of 2777-clone pools were amplified with specific primers P23-F1 and P23-R1 under the conditions specified above. Out of 1057 C4-4 hybridization-positive plugs and 884 2777-clone pools only five template sources amplified a 196 bp PCR product. These were: (1) Plug 334, (2) Plug 780, (3) RHT pool 233, (4) RHT pool 440, and (5) RHT pool 587.
Amplification of GLP-2R cDNA from the five positive templates was then performed. By using one specific primer (P23-R1 or P23-F1) and one primer based on pcDNA3 vector (Invitrogen) sequence (830F or 1186R), the GLP-2R cDNA insert was directly amplified from clonally impure plugs or 2777-clone pools. The sequences of the vector primers were as follows:
The PCR was done, under the following conditions just noted, using Expand™ PCR system.
The most prominent band was reamplified, purified and sequenced. Based on the amplified sequence obtained, additional primers were designed and new sequencing carried out. In this manner the complete sequences of the GLP-2R cDNA inserts in all five sources of clones were determined. Sequence analysis showed that only pool RHT 440 and pool RHT 587 contain clones with complete coding sequence of GLP-2R and that the two clones were identical (derived from the same cDNA clone).
Because of difficulty in clonally purifying the GLP-2 receptor cDNA clone from the RHT 440 or RHT 587 cDNA library pools, the cDNA was amplified and recloned into pcDNA3. Based on the sequence obtained from RHT 440 and RHT 587, two primers were designed one which primed starting 4 bp upstream of the initiation codon and another which primed starting 8 bp downstream of the stop codon.
The two primers were used to amplify a DNA fragment of approximately 1525 bp fragment under the following PCR conditions using Expand™ PCR system from Boehringer Mannheim (Catalogue no. 1681-842).
10 μl of 10× Expand™ PCR Buffer 114 μl of 2.5 mM dNTP mix
3.0 μl of Primer 1 (10 μM) (WBR-05) 3.0 μl of Primer 2 (10 μM) (WBR-C3)1.5 μl Of Enzyme (5 units)
63.5 μl water
Reaction conditions: 5 cycles (93° C., 1 Min; 72° C., 40 s; 60° C., 45 sec; 68° C., 2 min) and 25 cycles (93° C., 1 min; 72° C., 1 min; 68° C., 2 min).
The amplified product was subcloned into Kpn I and Xho I sites of pcDNA3 vector (Invitrogen). Plasmid DNA was prepared using the method described above.
Example 2 Functional AssayCos-1 cells were transfected as described in Analytical Biochemistry, 218:460-463(1994) with Rat clone 587 GLP-2 receptor, cloned human GLP-2 receptor (pC3/HuGL2R-2), or cloned residue 85 variant human GLP-2 receptor (pC3.1/HuGL2R-MH4), pcDNA3. Rat GLP-1 (7-36) amide was used as a control peptide. Solutions used were as follows:
RSC in RPMI 1640 (49 ml RPMI+1 ml FCS+5)0 ulchloroquine, 100 mM); DEAE/RSC Solution: 18.4 ml RSC+1.6 ml DEAE/Dextran (10 mg/ml).
The assay procedure entailed the following:
a) 50 mg of either rat clone 587 GLP-2 receptor, or cloned human GLP-2 receptor, or cloned residue 85 variant human GLP-2 receptor was added (as plasmid pcDNA3) to a 50 ml tube containing six mls. of RSC and incubated at 37° C.
b) Six ml of DEAE/RSC solution was added to each tube and incubated at 37° C. for 2 min.
c) 1.5 ml of COS-1 cell suspension (5.5 millions cells) was added to each tube and incubated for 1 hr 45 min at 37° C.
d) Following incubation, the sample was spun for 5 minutes at low speed, washed with DMEM/F12+10% FBS twice, and the pellet resuspended in 12.5 ml DMEM/F12+10% FBS media.
e) One ml of cell suspension (step d) was added to each well of 6 well plates coated with poly-D-lysine (from Collaborative Biomedical), containing 3 ml of media (0.45 million cells/well).
f) Plates were incubated at 37° C. for 3 days.
Treatment of Transfected Cos-1 cells with GLP-1/GLP-2 analog was done as follows: Solutions: DMEM/F12 (SFM)+IBMX (3-isobutyl-1-methylxanthin) 0.85 mM+0.1% ascorbic acid and 10 um pargyline (all solutions purchased from Sigma). Media was prepared fresh on day of use.
Assay Procedure: The culture media of each well (transfected 6 well plates, cells) was removed, and the wells were washed once with SFM media. Then 2 ml of SFM+IBMX media was added to each well and plates were incubated at 37° C. for 10 min. Following incubation, the SFM+IBMX was removed from each well and fresh SFM+IBMX media containing GLP-1/GLP-2 (GLP-1,7-36, amide from Sigma, [Gly2]hGLP-2 from Allelix) concentration 1, 3, 10 and 30 nM were added to the appropriate wells. Plates incubated at 37° C. incubator for 30 min. Following incubation, the media were removed from each well. The wells were washed once with 1 ml PBS (Phosphate Buffered Saline). Each well was then treated with 1 ml cold 95% ethanol:5 mM EDTA (2:1) at 4° C. for 1 hr. Cells from each well then were scraped and transferred into individual eppendorf tubes. Tubes were centrifuged for 5 min at 4° C., and the supernatants were transferred to new eppendorf tubes and dried in speed vacuum. Following drying, tubes were reconstituted in 100 ul of Na-Acetate and kept at 4° C., 25 μl of this solution used for cAMP Assay.
The functional assay was performed as follows: cAMP content for each extract was determined in duplicate by EIA (Enzyme ImmunoAssay) using the Amersham Biotrak cAMP EIA Kit (Amersham 225). Results of the assays, illustrated in
Medium-Stringency Hybridization Screening of a Human Hypothalamus cDNA Library
One million clones from a λgt10 cDNA library from human hypothalamus (Clontech; Cat. No. 1172a) were screened by plaque lifts on nitrocellulose filters (Amersham; Cat.RPN137E). The probe was prepared by random primer labelling of a DNA fragment containing the complete coding region of rat GLP-2 receptor. The DNA fragment was isolated from clone 587-C1, which contains the complete coding region from SEQ ID NO: 2.
Pre-hybridization and hybridization were each carried out overnight in a hybridization solution consisting of 50% formamide, 5×SSPE, 5×Denhart's solution, 0.5% SDS and salmon sperm DNA (200 mg/ml). After hybridization the filters were washed under the following conditions (medium stringency):
two times at room temperature in 2×SSPE and 0.01% SDS.
two times at 42° C. in 2×SSPE and 0.01% SDS.
two times at 42° C. in 0.2×SSPE and 0.01% SDS.
The filters were autoradiographed and agar plugs, each containing numerous bacteriophage plaques, were picked from regions on the plates corresponding to positive signals on the filter. From one million cDNA clones sampled in the first round screen, there were identified two positive clones (HHP6-1 and HHP13). On secondary screening only HHP13 turned out positive. Several positive plaques (HHIS13) from the HHP13 μlate were pooled and taken for tertiary screening. Three single positive plaques from this round of screening were picked (HHT13-1, HHT13-2, HHT13-3).
PCR amplification was then used for partial sequencing of the positive clones. On a lawn of bacterial cells (E. coli C600Hfl), 10 μl of phage suspension from each clone was applied at marked spots. After 5 hr incubation at 37° C., the phage plaques were clearly visible and covered ˜1 cm2. A portion of each plaque was transferred to 200 μl of water. The samples were incubated in a boiling water bath for 5 min and centrifuged at room temperature for 10 min. One millilitre of sample was used for PCR amplification with two sets of degenerate primers:
The Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842) was used under the following conditions:
5 μl of 10× Expand™ Buffer 37 μl of 2.5 mM dNTP mix
1.5 μl of primer M2FS or C4-4
1.5 μl of primer M7RS (with M2FS) or C9-2R (with C4-4)
0.75 μl of Expand PCR enzyme (1 unit)
33.25 μl water and
Reaction conditions were: 32 cycles at 93° C., 1 min; cycles 50° C., 1 min; cycles 45° C., 1 min; cycles 68° C., 2 min.
M2F/S and M7R/S amplified a DNA fragment of about 300 bp and C4-4 and C92-R amplified a DNA fragment of about 700 bp. The PCR products were purified using the QIAGEN QIAquick PCR purification kit (Cat. 28104) and eluted in 50 μl 10 mM Tris, pH 8.0. Sequence analysis of the products revealed no differences between the templates, as expected from the fact that they represent multiple copies of a single cDNA clone (HHT13).
A number of factors indicate that this clone contains coding sequence of the human GLP 2 receptor. One factor is the degree of sequence similarity. The glucagon receptor cDNA can be used to predict the expected degree of sequence conservation found between rat and human receptors. At the nucleotide level, there is 82.6% identity within the coding regions of the rat and human glucagon receptors. At the amino acid level, there is 80.9% identity and 89.1% amino acid similarity between the glucagon receptors of the two species.
In the case of the human GLP-2 receptor cloned herein, the sequence of the partial human GLP-2 receptor cDNA (HHT13) is highly homologous to rat GLP-2 receptor cDNA at both the nucleotide and amino acid level. SEQ ID NO: 9 shows 87.1% identity with the rat GLP-2 receptor cDNA sequence. The predicted amino acid sequence of this cDNA region has 87.4% identity and 93.2% similarity with the predicted amino acid sequence of the rat GLP-2 receptor. The total predicted length of the rat receptor preprotein is 550 amino acids, suggesting about 44% of the coding region of the human receptor had been identified.
Further evidence supporting this conclusion comes from a comparison of the partial human GLP-2 receptor amino acid sequence with the rat GLP-2 receptor and the 3 next closest family members, shown below:
These comparisons, together with the benchmark provided by sequence similarities between the rat and human glucagon receptors, provide definitive evidence that the cDNA designated HHT13 represents a fragment of the human counterpart of the rat GLP 2 receptor.
The full amino acid sequence of the human GLP-2 receptor can be obtained by first determining the sequence of the complete cDNA inserts in HHT13-1, HHT13-2 and HHT13-3. By using degenerate primers for PCR amplification and subsequent sequencing, we obtained sequence from only part of each insert. It is possible that these identical clones contain an insert which spans the complete coding sequence of the human GLP-2 receptor preprotein. To determine the complete sequence of the cDNA insert, the clones are grown in large quantity to prepare approximately 20 mg of each equivalent clone. The complete cDNA insert is excised by restriction with Eco RI, and subcloned into pcDNA3 (Invitrogen). Alternatively, two primers from vector sequence flanking the insert are used to amplify the complete cDNA insert using the Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842). The amplified cDNA is cut with appropriate restriction enzymes and is subcloned into pcDNA3 (Invitrogen).
If a complete coding sequence is not present in the HHT13 clones, cDNA libraries are screened for additional clones to complete the coding region of human GLP-2 receptor cDNA. Preferably human cDNA libraries (from Stratagene or Clontech) representing the following tissues are used for screening: Human hypothalamus; Human fetal brain; Human duodenum and jejunum; Human stomach; and Human fetal intestine.
Two PCR primers are designed from the sequence of human GLP-2 receptor cDNA already determined. These primers are designed such that they could not amplify any related gene family members other than the GLP-2 receptor cDNA itself. A dilution of the cDNA library stock is used to make library sub-pools such that 50,000 clones are represented in each pool. PCR is conducted with the GLP-2 receptor-specific primers to diagnose pools containing a GLP-2 receptor cDNA clone, using the Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842) under the following conditions:
2 μl of 10× Expand™ Buffer 12.8 μl of 2.5 mM dNTP mix
0.6 μl of primer P1
0.6 μl of primer P2
0.3 μl of Expand PCR enzyme (1 unit)
12.7 μl water
1 μl of library pool containing 50,000 clones
Reaction conditions: 32 cycles at 93° C., 40 sec; 50-58° C., 40 sec; 68° C., 40 sec.
Sequence is then obtained from the complete GLP-2 receptor cDNA insert from a positive pool. By using one specific primer and one primer based on vector sequence close to the cloning site, the GLP-2 receptor cDNA insert is directly amplified from clonally impure clone pools, using the Expand™ PCR system from Boehringer Mannheim (Catalogue no. 1681-842) most suitably under the following conditions:
2 μl of 10× Expand™ Buffer 12.8 μl of 2.5 mM dNTP mix
0.6 μl of Primer 1 0.6 μl of Primer 20.3 μl of Enzyme (1 unit)
12.7 μl water
1 μl of library pool stock
Reaction conditions: 32 cycles at 93° C., 45 sec; 50° C., 45 sec; 68° C., 1 min.
The reaction is run on a preparative agarose gel, and the most prominent band is purified and sequenced. Based on the amplified sequence obtained, additional primers are designed to obtain sequence and clones of complete coding region and clone the complete cDNA
5′ RACE and 3′ RACE are used to obtain complete coding sequence of the human GLP-2 receptor cDNA. Rapid Amplification of cDNA Ends (RACE) is a procedure routinely used for amplification of DNA sequences from first cDNA strand (easily prepared from mRNA) template between a defined internal site and either 3′ or the 5′ end of the mRNA. Total or mRNA from different human tissues are commercially available from Clontech. The 3′ RACE System (Gibco-BRL Life Technologies; Cat. 18373-019) and 5′ RACE System (Cat. 18374-058) kits are used. The manuals of these two products provide detailed protocols. In brief, protocols are as described below.
For the 3′ RACE procedure, first strand cDNA synthesis is initiated at the poly (A) tail of mRNA using the adapter primer (provided with system) incorporating a unique sequence for universal PCR amplification of the RACE products. After synthesis of the first strand cDNA from this primer, the original mRNA template is destroyed with RNase H. Amplification is then performed using two primers: one is a gene-specific primer (which will be designed from the available partial cDNA sequence of HHT13); the other is the universal amplification primer provided with the kit. The amplified product is subcloned into a plasmid vector for sequencing.
For the 5′ RACE System, the first strand cDNA is synthesized from mRNA using a gene specific primer (which is based on the available partial cDNA sequence of HHT13) and SuperScript II reverse transcriptase. The original mRNA template is removed by treatment with RNase H. Unincorporated dNTPs, primer, and proteins are separated from cDNA using spin cartridge. A homopolymeric dCTP tail is then added to the 3′-end of the first strand cDNA using TdT enzyme and dCTP nucleotides. PCR amplification is performed using two primers: one is a nested, gene-specific primer designed from the available partial DNA sequence of HHT13; and the other is an “anchor primer” provided with the system. Both primers incorporate restriction sites for subcloning into plasmids and subsequent sequencing.
Sub-Cloning of HHT13 λgt10 Clones into pcDNA3, their Sequencing and Expression
A. Amplification of cDNA Inserts with λgt10 Primers.
On a lawn of bacterial cells (E. coli C600Hf1), 10 μl of phage resuspension from each clone was placed at marked spots. After 5 hr incubation at 37° C., the phage plaques were clearly visible. The surface of each plaque was transferred to 200 μl of water. The samples were kept in boiling water bath for 5 minutes and centrifuged at room temperature for 10 minutes. 1 μl of sample was used to amplify with a set of λgt10 primers.
The Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842) was used under the following conditions:
5 μl of 10× Expand™ Buffer 37 μl of 2.5 mM dNTP mix
1.5 μl of primer GT10-5KXb
1.5 μl of primer GT10-3BXh
0.75 μl of Expand PCR enzyme (1 unit)
33.25 μl water
Reaction conditions: 5 cycles of 93° C.-40 sec; 50° C.-1 min; 68° C.-2 min and 30 cycles of 93° C.-40 sec; Ramp to 68° C.-1 min; 68° C.-2 min.
An amplified DNA fragment of about 2200 bp long was seen on the agarose gel from all three clones. The PCR product were purified using the QIAGEN's QIAquick PCR purification kit (Cat. No. 28104) and eluted in 50 μl 10 mM Tris, pH 8.0. The templates were sequenced.
B. Subcloning into pcDNA3 Vector.
The amplified and purified DNA from the three clones was restricted with Kpn I and Xho I and subcloned into pcDNA3 restricted with similar restriction enzymes. The plasmids were named pHHT13-1, pHHT13-2, and pHHT13-3. Plasmids DNAs were prepared using either crude method (alkaline treatment, bacterial DNA precipitation with 3 M KOAc, isopropanol precipitation followed by RNAse treatment and second round of isopropanol precipitation) or plasmid DNA kits from Qiagen Inc. The templates prepared using Qiagen's kits were sequenced.
C. Functional Assay
Transfections were carried out with each clone, using the rat GLP-2R, 587 clone as a positive control for cAMP response to GLP-2 peptide. Methods for transfection, cell culture and cAMP assay were identical to those described for the functional assay of rat, 587 clone. Results showed that although the positive control gave good cAMP response in COS cells, none of the HHT13 clones gave any cAMP response. As confirmed by sequencing which showed a frame-shift mutation, the functional data suggested that no functional GLP-2R protein was expressed from these cDNA clones.
D. Comparison of DNA Sequences Between Rat GLP-2R and HHT13 Subclones.
The comparison showed a 2 bp deletion at a position corresponding to nucleotides 389-390 of the rat GLP-2R cDNA, resulting in the loss of nucleotides 374-375 of the human GLP-2R cDNA sequence presented herein.
PCR was used to incorporate two by of the rat GLP-2R DNA sequence into HHT13-1 DNA at the site of the 2 bp frame-shift deletion identified relative to the rat GLP-2R coding sequence. The following primers were designed from HHT13 DNA sequence to insert two bp:
PCR 1: One ng of pHHT13-1 DNA was used as template to do two PCRs with primers, HWBR-F7 vs HWBR/2BPI-506R and HWBR/2BPI-475F vs HWBR-1910R. The Expand™ PCR system from Boehringer Mannheim (Cat. 1681-842) was used under the following conditions:
5 of 10× Expand™ Buffer 17 gl of 2.5 mM dNTP mix
1.5 μl of primer HWBR-F7 or HWBR/2BPI-475F
1.5 μl of primer HWBR/2BPI-506R or HWBR-1910R
0.75 μl of Expand PCR enzyme (1 unit)
33.25 μl water and
Reaction conditions: 10 cycles of 92° C.-40 sec; 48° C.-1 min; 68° C.-3 min and 30 cycles of 92° C.-40 sec; 55° C.-40 sec; 68° C.-2 min.
The primers HWBR-F7 and HWBR/2BPI-506R amplified a DNA fragment of 400 bp and HWBR/J2BPI-475F and HWBR-1910R amplified a DNA fragment of approximately 1.4 kb on an agarose gel. The two bands were cut out of the agarose gel and purified with Qiaquick gel extraction kit from Qiagen Inc. (Cat no. 28706) and the DNAs were eluted in 50 μl of 10 mM Tris (pH 8.5).
PCR 2 (Extension without primers): Approximately 75 ng of two amplified product from above PCR 1 were mixed and then recombined without primers by extending under the following conditions:
2 μl of 10× Expand™ Buffer 12.8 μl of 2.5 mM dNTP mix
0.3 μl of Expand PCR enzyme (1 unit)
8.9 μl water
6 μl of combined PCR 1 products
Reaction conditions: 15 cycles of 92° C.-1 min; 60° C.-5 min; 68° C.-3 min.
PCR 3: 1 μl of amplified mix from PCR 2 was used as template to amplify with HWBR-F7 and HWBR-1910R primers using the following conditions:
10 μl of 10× Expand™ Buffer 114 μl of 2.5 mM dNTP mix
3.0 μl of primer HWBR-F7 or HWBR/2BPI-475F
3.0 μl of primer HWBR/2BPI-506R or HWBR-1910R
1.5 μl of Expand PCR enzyme (1 unit)
67.5 μl water and
Reaction conditions: 30 cycles of 92° C.-1 min; 60° C.-1 min; 68° C.-2 min.
A DNA fragment of approximately 1.7 kb was amplified as seen on an agarose gel. The PCR product was purified using the QIAGEN's QIAquick PCR purification kit (Cat. No. 28104) and eluted in 50 μl of 10 mM Tris, pH 8.0. The purified product was restricted with Kpn I and subcioned into Kpn I-restricted pcDNA3.1(−)/Myc-His A (Invitrogen, Cat. No. V855-20). One clone, named pc3.1/HuGL2R/MH6 (pHuMH6), had the 1.7 kb insert in correct orientation as checked by PCR using vector vs. insert primers.
Functional assay: This hybrid clone was compared to rat GLP-2R using the assay described in Example 2. Results showed that the 2 bp “GA” replacement into the putative deletion site yielded a clone encoding a functional GLP-2R protein, as shown by the cAMP response to GLP-2 treatment.
Example 6 Isolation of the Full-Length Human GLP-2 Receptor cDNATwenty thousand clones from λgt10 cDNA Library from Human Stomach (Clontech; Cat. HL3017a) were plated on each of 100 agar 150 mm plates. SM buffer (0.1 M NaCl, 10 mM Mg2So4, 35 mM Tris, pH-7.5, 0.01% gelatin) was added to each plate to obtain 100 phage lysates each containing 20,000 (20K) pooled clones. The first fifty 20K phage lysates (20K pools) were screened by PCR using two primers designed from HHT13 DNA sequence. The template DNA from each pool was prepared by boiling phage lysate for 10 minutes and centrifuging for 10 minutes.
1 μl of each 20K pool DNA was diagnosed by PCR with HWBR-113F and HWBR-578R primers using the following conditions:
2.8 μl of 2.5 mM dNTP mix
0.6 μl of primer HWBR-113F
0.6 μl of primer HWBR-578R
0.3 μl of Expand PCR enzyme (1 unit)
12.7 μl water
1 μl 20K pool DNA
Reaction conditions: 35 cycles of 92° C.-40 s.; 60° C.-40 s.; 68° C.-1 min.
A DNA fragment of approximately 450 bp was seen in amplification of templates from two pools (HST 19 and HST 38).
B. Screening of Clones from Two Positive Pools: HST 19 and HST 38.
40,000 clones plated from each of two positive 20K pools were screened by plaque lifts on nitrocellulose filters (Amersham; Cat.RPN137E). The probe was prepared by random primer labelling a DNA fragment from pHHT13-1.
1. The filters were pre-hybridized and hybridized at 42° C. overnight. Hybridization solution consisted of 50% formamide, 5×SSPE, 5×Denhart's solution, 0.5% SDS and salmon sperm DNA (200 mg/ml).
2. After hybridization the filters were washed under the following conditions:
two times at room temperature in 2×SSPE and 0.01% SDS;
two times at 42° C. in 2×SSPE and 0.01% SDS; and
two times at 50° C. in 0.1×SSPE and 0.01% SDS..
3. The filters were autoradiographed and the regions on the plates matching to positive signals were isolated. One positive clone (HST 38-4-30) was isolated from HST 38 pool. 450 bp DNA fragment was amplified from the positive clone by using primers HWBR-113F and HWBR-578R and sequenced. The sequence clearly showed that the plasmid contain 2 bp (AG) at position 373-374 of HHT13 DNA sequence.
The complete insert of clone HST 38-4-30 was amplified using λgt10 primers as described in Example 1. PCR amplified a DNA fragment of approximately 1.4 kb. The amplified DNA was purified and sequenced.
Example 7 Reconstruction of a Clone of Full-Length Functional Human GLP-2R cDNA and Functional AssayA 700 bp fragment obtained by Kpn I and Pvu II restriction digest of the amplified DNA from clone HST 38-4-30, and 1.4 kb DNA fragment from Xho I and Pvu II restricted pHHT13-1 DNA were subcloned into Kpn I and Xho I restricted pcDNA3 in a three-way ligation. The new plasmid construct was called pc3/HuGL2R-2. In this manner the full length sequence of the human GLP-2 receptor was obtained.
Functional Assay: The new clone was compared to the rat GLP-2R clone 587 as described previously above. Results showed that the clone encoded a functional human GLP-2R protein, which led to cAMP production in COS cells in response to GLP-2 treatment (
1. Antipeptide Antibodies
Antipeptide antibodies were raised in rabbits against an N-terminal peptide (QTRENTTDIWQDESE) (SEQ ID NO: 26), a C-terminal peptide (SEGDGSETLQKLR) (SEQ ID NO: 27) and extracellular loop 1 (SHNSYSKRPDDESG) (SEQ ID NO: 28) of the rat GLP-2 receptor.
Immunocytochemical analysis of serum produced as above confirmed that serum contained antibodies directed to the GLP-2 receptor which do not cross react with the rat GLP-1 receptor.
2. Antibodies to a GLP-2 Receptor Raised Against a Fusion Protein
Polynucleotide encoding the C-terminal region of rat GLP-2 receptor (amino acids 444-550) was spliced to the C-terminus of glutathione S-transferase (GST) in pGEX-2T and expressed in E. coli strain SUREI. Protein was purified using affinity chromatography using the above GLP-2 C-terminal fragment fused to the C-terminus of maltose binding protein. Protease degradation was minimized by using a cocktail or protease inhibitors (Boeringer Mannheim).
Antibodies were raised generally according to the method disclosed in Antibodies: A laboratory manual, Harlow and Lane, Cold Spring Harbor Laboratory, 1988. Briefly, the GLP-2-GST fusion protein was used to raise antibodies in rabbits as follows. Initial injection was with 100 μg of fusion protein in complete Freund's adjuvant at multiple sites, intramuscularly and subcutaneously. Booster injections were made at multiple sites intramuscularly with 100 μl of fusion protein in incomplete Freund's adjuvant at days 14, 21, 42 and 56.
Antisera was affinity purified using a GLP-2-MBP fusion protein affinity column. Immunocytochemical analysis confirmed that these antibodies specifically recognize the GLP-2 receptor.
EQUIVALENTSThe foregoing written specification is considered to be sufficient to enable one skilled in the art to practice the invention. Indeed, various modifications of the above-described makes for carrying out the invention which are obvious to those skilled in the field of biochemistry, molecular biology or related fields are intended to be within the scope of the following claims.
Claims
1.-16. (canceled)
17. An isolated polynucleotide which encodes a chimeric GLP-2 receptor, comprising:
- an N-terminal extracellular domain of a GLP-2 receptor; and
- at least one domain of a G-protein coupled receptor, wherein the G-protein coupled receptor is not the GLP-2 receptor, and wherein the domain is selected from at least one of a transmembrane domain or a C-terminal intracellular domain.
18. The isolated polynucleotide of claim 17, wherein the GLP-2 receptor is selected from a human GLP-2 receptor comprising the amino acid sequence of amino acids 67-553 of SEQ ID NO: 12, and a GLP-2 receptor which is at least 95% identical to amino acids 26-553 of SEQ ID NO: 12 and which exhibits the functional characteristic of selectively binding GLP-2.
19. The isolated polynucleotide of claim 18, wherein the GLP-2 receptor is the human GLP-2 receptor comprising the amino acid sequence of amino acids 67-553 of SEQ ID NO: 12, and wherein the N-terminal extracellular domain of the GLP-2 receptor comprises the amino acid sequence of amino acids 67-180 of SEQ ID NO: 12.
20. The isolated polynucleotide of claim 19, wherein the at least one domain of the G-protein coupled receptor is the transmembrane domain.
21. The isolated polynucleotide of claim 20, wherein the transmembrane domain of the G-protein coupled receptor is an analog of a transmembrane domain of the GLP-2 receptor.
22. The isolated polynucleotide of claim 21, wherein the transmembrane domain of the GLP-2 receptor comprises an amino acid sequence, wherein the amino acid sequence is selected from at least one of amino acids 181-203 of SEQ ID NO: 12, amino acids 211-230 of SEQ ID NO: 12, amino acids 262-285 of SEQ ID NO: 12, amino acids 300-321 of SEQ ID NO: 12, amino acids 339-362 of SEQ ID NO: 12, amino acids 386-405 of SEQ ID NO: 12, or amino acids 422-441 of SEQ ID NO: 12.
23. The isolated polynucleotide of claim 19, wherein the at least one domain of the G-protein coupled receptor is the C-terminal intracellular domain.
24. The isolated polynucleotide of claim 23, wherein the C-terminal intracellular domain of the G-coupled receptor is an analog of a C-terminal intracellular domain of the GLP-2 receptor.
25. The isolated polynucleotide of claim 24, wherein the C-terminal intracellular domain of the GLP-2 receptor comprises the amino acid sequence of amino acids 442-553 of SEQ ID NO: 12.
26. The isolated polynucleotide of claim 19, wherein the N-terminal extracellular domain of the GLP-2 receptor comprises at least one amino acid substitution.
27. The isolated polynucleotide of claim 26, wherein the at least one amino acid substitution comprises one or more of:
- at least one amino acid substitution at one of the following amino acid positions of SEQ ID NO: 12: 78, 82, 85, 88-91, 110, 127, 130, 146, 149, 171, or 176; or
- at least one conservative amino acid substitution at one of the following amino acid positions of SEQ ID NO: 12: 70, 74, 81, 102, 126, 156, or 166.
28. The isolated polynucleotide of claim 21, wherein the at least one domain of the G-protein coupled receptor comprises at least one amino acid substitution.
29. The isolated polynucleotide of claim 19, further comprising an expression controlling element.
30. A method for identifying GLP-2 receptor ligands comprising:
- incorporating the isolated polynucleotide of claim 29 within a cell;
- incubating a candidate ligand with the cell or with a membrane preparation obtained therefrom; and
- determining whether binding between the N-terminal extracellular domain of the GLP-2 receptor and the candidate ligand has occurred.
31. The method of claim 30, wherein the cell is a mammalian cell.
Type: Application
Filed: Oct 31, 2013
Publication Date: Sep 4, 2014
Applicant: NPS PHARMACEUTICALS, INC. (BEDMINSTER, NJ)
Inventors: Donald G. Munroe (Waterdown), Gupta K. Ashwani (Mississauga), Tejal B. Vyas (Mississauga), Kirk McCallum (Mississauga), Ermei Fan (Toronto)
Application Number: 14/068,992
International Classification: G01N 33/68 (20060101); C07K 14/72 (20060101);
