GENERATION OF HEAVY-CHAIN ONLY ANTIBODIES IN TRANSGENIC ANIMALS
The present invention relates to a method for the generation of VH heavy chain-only antibodies in a transgenic non-human mammal. In particular, the present invention relates to a method for the production of a VH heavy chain-only antibody in a transgenic non-human mammal comprising the step of expressing more than one heterologous VH heavy chain locus in that mammal.
The present application is a continuation under 35 U.S.C. § 120 of U.S. patent application Ser. No. 14/962,335, filed Dec. 8, 2015, which is a 35 U.S.C. 371 National Stage Application of International Application No. PCT/IB2007/001491, International Filing Date: Jan. 25, 2007, which claims priority under 35 U.S.C. § 119(a) to Great Britain Application No. 0601511.9, Filing Date: Jan. 25, 2006, and Great Britain Application No. 0618345.3, Filing Date: Sep. 18, 2006, each of which is incorporated herein by reference in its entirety.
FIELD OF THE INVENTIONThe present invention relates to improved methods for the manufacture in transgenic non-human mammals of a diverse repertoire of functional, affinity-matured heavy chain-only antibodies in response to antigen challenge and uses thereof. The invention also relates to the manufacture of a diverse repertoire of class-specific heavy chain-only antibodies from multiple loci.
In particular, the present invention relates to a method for the generation of human antigen-specific, high affinity, heavy chain-only antibodies of any class or mixture of classes and the isolation and expression of fully functional VH antigen-binding domains. Heavy chain-only antibodies generated using the methods of the present invention are also described.
In the following description, all amino acid residue position numbers are given according to the numbering system devised by Kabat et at, [1].
BACKGROUND TO THE INVENTION AntibodiesThe structure of antibodies is well known in the art. Most natural antibodies are tetrameric, comprising two heavy chains and two light chains. The heavy chains are joined to each other via disulphide bonds between hinge domains located approximately half way along each heavy chain. A light chain is associated with each heavy chain on the N-terminal side of the hinge domain. Each light chain is normally bound to its respective heavy chain by a disulphide bond close to the hinge domain.
When an antibody molecule is correctly folded, each chain folds into a number of distinct globular domains joined by more linear polypeptide sequences. For example, the light chain folds into a variable (VL) and a constant (CL) domain. Heavy chains have a single variable domain VH, a first constant domain (CH 1), A hinge domain and two or three further constant domains. The heavy chain constant domains and the hinge domain together form what is generally known as the constant region of an antibody heavy chain. Interaction of the heavy (VH) and light (VL) chain variable domains results in the formation of an antigen binding region (Fv). Interaction of the heavy and light chains is facilitated by the CH1 domain of the heavy chain and the CK or 01 domain of the light chain. Generally, both VH and VL are required for antigen binding, although heavy chain dimers and amino-terminal fragments have been shown to retain activity in the absence of light chain [2].
Within the variable domains of both heavy (VH) and light (VL) chains, some short polypeptide segments show exceptional variability. These segments are termed hypervariable regions or complementarity determining regions (CDRs). The intervening segments are called framework regions (FRs). In each of the VH and VL domains, there are three CDRs (CDR1-CDR3).
In mammals there are five classes of antibody: IgA, IgD, IgE, IgG and IgM, with four IgG and two IgA subtypes present in humans.
Antibody classes differ in their physiological function. For example, IgG plays a dominant role in a mature immune response. IgM is involved in complement fixing and agglutination. IgA is the major class of antibody in secretions—tears, saliva, colostrum, mucus—and thus plays a role in local immunity. The effector functions of natural antibodies are provided by the heavy chain constant region.
IgA can be found in areas containing mucus (e.g. in the gut, in the respiratory tract or in the urinogenital tract) and prevents the colonization of mucosal areas by pathogens. IgD functions mainly as an antigen receptor on B cells. IgE binds to allergens and triggers histamine release from mast cells (the underlying mechanism of allergy) and also provides protection against helminths (worms). IgG (in its four isotypes) provides the majority of antibody-based immunity against invading pathogens. IgM is expressed on the surface of B cells and also in a secreted form with very high affinity for eliminating pathogens in the early stages of B cell mediated immunity (i.e. before there is sufficient IgG to eliminate the pathogens).
Normal human B cells contain a single heavy chain locus on chromosome 14 from which the gene encoding a heavy chain is produced by rearrangement. In the mouse the heavy chain locus is located on chromosome 12. A normal heavy chain locus comprises a plurality of V gene segments, a number of D gene segments and a number of J gene segments. Most of a VH domain is encoded by a V gene segment, but the C terminal end of each VH domain is encoded by a D gene segment and a J gene segment. VDJ rearrangement in B-cells, followed by affinity maturation, provides each VH domain with its antigen binding specificity. Sequence analysis of normal H2L2 tetramers demonstrates that diversity results primarily from a combination of VDJ rearrangement and somatic hypermutation [3], There are over 50 human V gene segments present in the human genome of which only 39 are functional.
Fully human antibodies (H2L2) can now be derived from transgenic mice in response to antigen challenge. Such transgenic mice comprise a single human heavy chain locus and a separate light chain locus. The comparable mouse heavy and light chain loci are deleted or suppressed so that only human antibodies are produced in the absence of mouse antibodies ([4-10]).
With the advent of new molecular biology techniques, the presence of heavy chain-only antibody (devoid of light chain) was identified in B-cell proliferative disorders in man (Heavy Chain Disease) and in murine model systems. Analysis of heavy chain disease at the molecular level showed that mutations and deletions at the level of the genome could result in inappropriate expression of the heavy chain CH1 domain, giving rise to the expression of heavy chain-only antibody lacking the ability to bind light chain [11,12], It has been shown that camelids, as a result of natural gene mutations, produce functional IgG2 and IgG3 heavy chain-only dimers which are unable to bind light chain due to the absence of the CH1 domain, which mediates binding to the light chain [13]. A characterising feature of the camelid heavy chain-only antibody is a particular subset of camelid VH domains, which provides improved solubility relative to human and normal camelid VH domains. The camelid VH domains in this particular subset are usually referred to as VHH domains.
It has also been shown that species such as shark produce a heavy chain-only-like binding protein family, probably related to the mammalian T-cell receptor or antibody light chain [14].
For the production of camelid heavy chain-only antibody, the heavy chain locus in the camelid germline comprises gene segments encoding some or all of the possible heavy chain constant regions. During maturation, a re-arranged VHHDJ binding domain is spliced onto the 5′ end of the gene segment encoding the hinge domain, to provide a rearranged gene encoding a heavy chain which lacks a CH1 domain and is therefore unable to associate with a light chain.
Camelid VHH domains contain a number of characteristic amino acids at positions 37, 44, 45 and 47 [49]. These conserved amino acids are thought to be important for conferring solubility on heavy chain-only antibodies. Only certain camelid VH domains are VHH domains with improved solubility characteristics. They are limited to VH subfamily and so respond productively only to a limited range of antigens.
Heavy chain-only monoclonal antibodies can be recovered from B-cells of camelid spleen by standard cloning technology or from B-cell mRNA by phage or other display technology [18]. Heavy chain-only antibodies derived from camelids are of high affinity. Sequence analysis of mRNA encoding heavy chain-only antibody demonstrates that diversity results primarily from a combination of VHHDJ rearrangement and somatic hypermutation [49] as is also observed in the production of normal tetrameric antibodies. An important and common feature of natural camelid and human VH domains is that each domain binds as a monomer with no dependency on dimerisation with a VL domain for optimal solubility and binding affinity.
Recently, methods for the production of heavy chain-only antibodies in transgenic non-human mammals have been developed (see WO02/085945 and WO02/085944).
Functional heavy chain-only antibody of potentially any class (IgM, IgG, IgD, IgA or IgE) and derived from any mammal can be produced from transgenic non-human mammals (preferably mice) as a result of antigen challenge. These initial studies relied on the use of two llama V gene segments and suffered from a limited repertoire of antibody response.
Janssens et al. [15] have developed methods for the derivation of heavy chain-only antibodies in transgenic mice. These heavy chain-only antibodies have high binding affinity as a result of antibody maturation in B-cells, can be derived as a result of antigen challenge and selected using established hybridoma technology and can be produced as any class of antibody in the absence of light chain (e.g. IgG, IgA, IgM) or as VH binding domains alone. These heavy chain-only antibodies were derived from an antibody heavy chain locus in a germline (i.e. non-rearranged) configuration that contained two llama VHH (class 3) gene segments coupled to all of the human D and J gene segments and gene segments encoding all the human constant regions. The gene segments encoding each of the constant regions had a deletion of the CH1 domain to prevent the binding of light chains. In addition, the locus contained the antibody LCR at the 3′ end to ensure a high level of expression in cells of the B lineage. This locus was introduced into the mice by microinjection of fertilized eggs.
Production of Antibody-Based ProductsThe production of antibody-based products by genetic engineering, in particular the production of human or humanised antibody-based products, has resulted in the generation of new classes of medicines, diagnostics and reagents and, in parallel, opportunity for new industry, employment and wealth creation (see www.drugresearcher.com, www.leaddiscoverv.co.uk). Antibody-based products are usually derived from natural tetrameric antibodies. There are many patents and applications which relate to the production of antibody-based products. These patents and applications relate to routes of derivation (e.g. from transgenic mice), routes of manufacture and product-specific substances of matter. Such antibody-based products vary from complete tetrameric antibodies through antibody fragments to single chain Fv (scFv) molecules.
Antibody-based products will represent a high proportion of new medicines launched in the 21st century. Monoclonal antibody therapy is already accepted as a preferred route for the treatment for rheumatoid arthritis and Crohn's disease and there is impressive progress in the treatment of cancer. Antibody-based products are also in development for the treatment of cardiovascular and infectious diseases. Most marketed antibody-based products recognise and bind a single, well-defined epitope on the target ligand (e.g. TNFα).
Recently, high affinity VH domains have been: selected from randomised human VH domains in display libraries or derived from heavy chain-only antibody produced naturally from antigen challenge of camelids or derived from VH domain libraries made from camelids. These high affinity VH domains have been incorporated into antibody-based products. These VH domains, also called VHH domains, display a number of differences from classical VH domains, in particular a number of mutations that ensure improved solubility and stability of the heavy chains in the absence of light chains. Most prominent amongst these changes is the presence of a charged amino acid at position 45 [16].
A number of groups have worked on the generation of heavy chain-only antibodies derived from natural tetrameric antibodies. Jaton et al [2 and other references cited therein] describe the separation of the reduced heavy chain components of an affinity purified, well-characterised rabbit antibody, followed by the subsequent renaturation of the individual heavy chains. Immunological characterisation of the renatured heavy chains demonstrated that a heavy chain homodimer alone, free of light chain, is capable binding antigen.
Later Ward et al. [18] demonstrated unambiguously that cloned murine VH regions, when expressed as soluble protein monomers in an E. coli expression system, retain the ability to bind antigen with high affinity. Ward et al [18] describe the isolation and characterisation of VH domains and set out the potential commercial advantages of this approach when compared with classic monoclonal antibody production (see last paragraph). They also recognise that VH domains isolated from heavy chains which normally associate with a light chain lack the solubility of the natural tetrameric antibodies. Hence Ward et al [18] used the term “sticky” to describe these molecules and proposed that this “stickiness” can be addressed through the design of VH domains with improved solubility properties.
The improvement of VH solubility has subsequently been addressed using combinations of randomized and site-directed approaches using phage display. For example, Davies and Riechmann [17] and others (see WO92/01047) incorporated some of the features of VH domains from camelid heavy chain-only antibodies in combination with phage display to improve solubility whilst maintaining binding specificity.
Separate studies on isolated human VH domains derived from phage libraries demonstrated antigen-specific binding of VH domains but these VH domains proved to be of low solubility. Furthermore, it was suggested that the selection of human VH domains with specific binding characteristics displayed on phage arrays could form the building blocks for engineered antibodies [18].
Human VH domains may be engineered for improved solubility characteristics [19, 20] or solubility maybe be acquired by natural selection in vivo [21]. However, where VH binding domains have been derived from phage libraries, intrinsic affinities for antigen remain in the low micromolar to high nanomolar range, in spite of the application of affinity improvement strategies involving, for example, affinity hot spot randomisation [22].
Human VH or camelid VH domains produced by phage or alternative display technology lack the advantage of improved characteristics as a result of somatic mutations and the additional diversity provided by D and J gene segment recombination in the CDR3 region of the normal antibody binding site. Some camelid VH(VHH) domains, whilst showing benefits in solubility relative to human VH, may prove antigenic in man and, moreover, suffer the disadvantage that camelid VH must be generated by immunisation of camelids or by phage display technology.
Phage-derived human VH regions are laborious to use since they require many rounds of panning and subsequent mutagenesis in order to achieve high affinity binding characteristics. Camelid VHH domains require the same laborious procedure when isolated from phage or similar display libraries or require the immunization of large animals (llama or camels which also make classical antibodies) not amenable to classic hybridoma technology. Moreover, camelid binding domains may prove antigenic and require humanization.
The production of heavy chain-only antibodies in transgenic non-human mammals (see WO02/085945 and WO02/085944).) as a result of antigen challenge overcomes many of these problems.
However, there remains a need in the art to maximise heavy chain-only antibody diversity and B-cell response in vivo and, in particular, to generate a functional repertoire of class specific human heavy chain-only antibodies and functional VH heavy chain-only binding domains which retain maximum antigen-binding potential for use in diverse clinical, industrial and research applications.
The InventionThe present inventors have surprisingly overcome the limitations of the prior art and shown that the repertoire of antibody response can be greatly increased by increasing the number of heavy chain-only loci present in a transgenic non-human mammal used to produce class-specific, heavy chain-only antibodies.
The invention relies on the discovery that, where a transgenic non-human mammal possesses multiple heavy chain-only loci, these loci are subject to allelic exclusion. Therefore, only one locus is stochastically chosen and recombined successfully, resulting in the production of a heavy chain-only antibody. Multiple VH heavy chain loci can, therefore, be used in the same transgenic non-human mammal to maximise the antibody repertoire and diversity obtainable from the mammal. When antigenically challenged, the transgenic non-human mammal “selects” the locus comprising the V gene segment which is best suited to respond to the specific antigen challenge to the exclusion of the remaining loci.
Heavy chain-only antibodies that can be generated by the methods of the invention show high binding affinity as a result of the transgenic non-human mammal being able to “choose” from a range of loci, from which V, D and J gene segment rearrangements and somatic mutations can occur, generally in the absence of an enlarged CDR3 loop.
Essentially normal B-cell maturation is observed with high levels of heavy chain-only antibody present in isolated plasma (provided that the CH1 domain has been eliminated from all antibody classes present in the recombinant locus). B-cell maturation and the secretion of assembled dimers (e.g. IgG) or multimers (e.g. IgM) has no dependency on the presence or expression of light chain genes.
Accordingly, in the first aspect of the present invention, there is provided a method for the production of a VH heavy chain-only antibody in a transgenic non-human mammal comprising the step of providing more than one heterologous VH heavy chain locus in that mammal, wherein each VH heavy chain locus comprises one or more V gene segments, one or more D gene segments, one or more J gene segments and a gene segment encoding a heavy chain constant region which, when expressed, does not include a CH1 domain and expressing a VH heavy chain-only antibody from at least one of said loci.
Preferably each VH heavy chain locus comprises one or multiple V gene segments, e.g. 1, 2, 3, 4, 5, 6, 1, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 45, 50 or 60 V gene segments, which may be derived from any vertebrate species.
In one embodiment, each locus may comprise only one V gene segment. In one alternative of this embodiment, each V gene segment is different from all other V gene segments. In a second alternative, each V gene segment is identical to all the other V gene segments. In this second alternative, the remaining gene segments in each locus may be the same as or may be different from those in all the other loci.
It is thus envisaged that the non-human mammal may contain multiple copies of a single VH heavy chain locus. This has the advantage of optimising the chances that a productive re-arrangement in a B cell will take place, thus allowing the production of a useful heavy chain-only antibody.
If the non-human mammal contains a number of different VH heavy chain loci, this will further optimise the chances of obtaining a heavy chain-only antibody with a desired specificity.
In another embodiment, each locus comprises multiple V gene segments. In this embodiment, the V gene segments in any one locus may all be derived from an organism of the same species, e.g. all V gene segments may be of human origin. Alternatively, the V gene segments in any one locus may be derived from organisms of different species, e.g. some V gene segments from human and others from camelids or from sharks.
Preferably, the V gene segments are of human origin.
The term ‘V gene segment’ encompasses any naturally occurring V gene segment derived from a vertebrate, including camelids and human. The V gene segment must be capable of recombining with a D gene segment, a J gene segment and a gene segment encoding a heavy chain constant (effector) region (which may comprise several exons but excludes a CH1 exon) to generate a VH heavy chain-only antibody when the nucleic acid is expressed.
A V gene segment also includes within its scope any gene sequence encoding a homologue, derivative or protein fragment which is capable of recombining with a D gene segment, a J gene segment and a gene segment encoding a heavy chain constant region (comprising one or more exons but not a CH1 exon) to generate a heavy chain-only antibody as defined herein. A V gene segment may for example be derived from a T-cell receptor locus or an immunoglobulin light chain locus.
Preferably the multiple heavy chain loci of the invention comprise any number or combination of the 39 functional human V gene segments and engineered variants thereof with improved solubility properties distributed across the multiple loci. These may be on any number of loci, e.g. four loci comprising eight V gene segments plus one locus comprising seven V gene segments; seven loci comprising four V gene segments plus one locus comprising three V gene segments; or thirty-nine loci comprising one V gene segment each.
Human V genes are classified into seven families, VH1 to VH7, and the individual genes within each family numbered. The frequency at which each gene is used is dependent on the varying requirements of the particular immune response. For example, the genes of family VH3 may be preferentially used in comparison to those of family VH5 when responding to bacterial antigens. Therefore, in a further preferred embodiment of the invention, groups of V gene segments which have been shown to be useful for generating an antibody response against specific antigens are grouped into separate lines of transgenic non-human mammals. The V gene segments may be grouped according to family or they may be grouped according to individual function. For example, if the V genes of family VH3 are shown to be useful for generating an immune response against bacterial antigens, then these may be used to generate a transgenic non-human mammal which is particularly useful for generating heavy chain-only antibodies against bacterial antigens. Alternatively, if it is shown that several individual genes from families VH3 and VH5 are useful for generating an immune response against bacterial antigens, then these may be grouped together and used to generate a transgenic non-human mammal which is particularly useful for generating heavy chain-only antibodies against bacterial antigens.
In the context of the present invention, the term ‘heterologous’ means a nucleotide sequence or a locus as herein described which is not endogenous to the mammal in which it is located.
A “VH heavy chain locus” in the context of the present invention relates to a minimal micro-locus encoding a VH domain comprising one or more V gene segments, one or more D gene segments and one or more J gene segments, operationally linked to one or more gene segments encoding heavy chain effector regions (each devoid of a CH1 domain). Preferably, the primary source of antibody repertoire variability is the CDR3 region formed by the selection of V, D and J gene segments and by the V-D and D-J junctions.
The advantage of the present invention is that antibody repertoire and diversity obtained in the rearranged VH gene sequences can be maximised through the use of multiple VH heavy chain loci in the same transgenic non-human mammal. Janssens et al., 2006 [15] have shown that a transgenic locus as described above behaves like a normal immunoglobulin locus in terms of rearrangement and allelic exclusion. This opens up the possibility to have multiple loci in the same animal (on different chromosomes) to maximize the number of possible VH recombinations by exploiting allelic exclusion. Each of the transgenic loci would contain from one to more than forty VH regions. The process of allelic exclusion which randomly chooses one of the loci to start recombination, followed by the next locus if the first recombination was non-productive, etc. until a productive recombination has been produced from one of the loci, would ensure that actually all the VH regions present in the combined loci would be part of the overall recombination process.
Janssens et al, [15] have also surprisingly found that where multiple heavy chain loci in the same transgenic non-human mammal are in tandem on the same chromosome then then productive rearrangement and antibody expression can occur from multiple heavy chain loci. In such cases, subsequent hybridoma clones are polyclonal. The skilled person will appreciate that this is another mechanism for increasing antibody diversity. Accordingly in another aspect of the invention there is provided a method as herein described, wherein at least two or more VH heavy chain locus in the transgenic non-human mammal are present in tandem on the same chromosome, then productive rearrangement and antibody expression can occur from two or more loci simultaneously. Preferably, a number of heavy chain loci will first be introduced separately in a transgenic non-human mammal, generating transgenic non-human mammals with a single heavy chain locus. These animals will then be crossed to generate progeny with multiple heavy chain loci to maximize the number of VH regions, resulting in maximum diversity. Loci can also be added through a new round of transgenesis. New loci would be injected into eggs derived from non-human mammals already comprising one or more heterologous VH heavy chain locus. Stable integration of new heterologous VH heavy loci would result in an increase in available VH regions and hence diversity. The stable transfection of ES cells derived from non-human transgenic mammals comprising a heterologous VH heavy chain locus, with additional heterologous VH heavy chain loci, provides an alternative route to increase diversity in non-human mammals (eg mice) where ES cell technology can be used for transgenesis by embryo fusion and blastocyst injection.
Preferably, each different heavy chain locus will be present as a single copy in the genome of the transgenic non-human mammal.
Furthermore, the use of multiple V, D and J gene segments provides a further increase in the antibody repertoire and diversity obtainable. Subsequent somatic mutation is achieved whilst using a minimal locus (micro-locus) without the need for the VL and LC (light chain) antibody loci.
In the context of the present invention, the terms ‘a D gene segment’ and ‘a J gene segment’ include naturally occurring sequences of D and J gene segments. Preferably, the D and J gene segments are derived from the same vertebrate from which the V gene segment is derived. For example, if a V gene segment is derived from a human, then as required solubilised or engineered, the D and J gene segments are preferably also derived from a human, —Alternatively the Y gene segments maybe derived, for example, from a camelid and the D and J gene segments from human or vice versa.
The terms D gene segment and J gene segment also include within their scope derivatives, homologues and fragments thereof as long as the resultant segment can recombine with the remaining components of a heavy chain antibody locus as herein described to generate a heavy chain-only antibody as herein described. D and J gene segments may be derived from naturally occurring sources or they may be synthesised using methods familiar to those skilled in the art and described herein. The V, D and J gene segments are capable of recombination and preferably undergo somatic mutation. The D and J gene segments are preferably derived from a single vertebrate species. This may be any vertebrate species but is preferably a human.
Preferably, each VH heavy chain locus comprises from one to forty (2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 18, 20, 30 or 40) or more D gene segments. The D gene segments maybe derived from any vertebrate species but, most preferably, the D gene segments are human D gene segments (normally 25 functional D gene segments).
Preferably, each VH heavy chain locus comprises from one to twenty (2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 18 or 20) or more J gene segments. The J gene segments maybe derived from any vertebrate species but, most preferably, the J gene segments are human J gene segments (normally 6 (six) J gene segments).
Each VH heavy chain locus may contain the same D and J gene segments. Alternatively, each VH heavy chain locus may contain different combinations of D and J gene segments. For example, where each VH heavy chain locus contains only one V gene segment and this segment is identical in each locus, it is then advantageous to use different combinations of D and J gene segments in each locus to further optimise the chances of obtaining a productive re-arrangement. However, where each VH heavy chain locus contains one or more different V gene segments, it may be advantageous to use the same combination of D and J gene segments in each locus.
Preferably, the VH heavy chain locus comprises one or more V gene segments, twenty-five functional human D gene segments and six human J gene segments.
Each gene segment encoding a heavy chain constant region may comprise one or more heavy chain constant region exons of the Cδ, Oγ1-4, Cμ, Cε or Cα1-2 class, with the proviso that the heavy chain constant region gene segments do not express a CH1 domain. The heavy chain constant region gene segments are selected depending on the preferred class or mixture of antibody classes required. Optionally, the heterologous heavy chain locus is Cμ- and Cδ-deficient.
Thus, each VH heavy chain locus may comprise a gene segment encoding at least one heavy chain constant region providing effector functions in vivo (e.g. IgG, IgM, IgA, IgE or IgD or an isotype thereof) wherein each constant region does not include a CH1 domain. Each locus may contain only one gene segment encoding one particular constant region. This will be advantageous if certain effector functions are required. Alternatively, each locus may comprise more than one gene segment, each encoding a different constant region. This will be advantageous if there is no requirement for particular effector functions as it will allow a variety of classes of heavy chain-only antibody to be produced.
Each locus may contain the same constant region-encoding gene segment(s) or each locus may have different or a different combination of constant region-encoding gene segment(s).
Operationally, a heavy chain constant region is encoded by a naturally occurring or engineered gene segment that is capable of recombining with a V gene segment, a D gene segment and a J gene segment in a B cell.
In each heavy chain-only antibody, the constant region is expressed without a CH1 domain so that generation of heavy chain-only antibody can occur. The CH1 exons may be deleted so that the constant region of the VH heavy chain-only antibody as described above does not contain a functional CH1 domain.
The inclusion of class-specific heavy chain constant regions when engineering multivalent binding complexes provides the therapeutic benefits of effector function in vivo dependent on the functionality required. Engineering of individual effector regions can also result in the addition or deletion of functionality [23], Thus, the inclusion of IgA constant region functionality would provide improved mucosal function against pathogens [24], whilst the presence of IgG1 constant region functionality provides enhanced serum stability in vivo. The presence of heavy chain CH2 and CH3 constant domains provides the basis for stable dimerisation as seen in natural antibodies and provides recognition sites for post-translational glycosylation. The presence of CH2 and CH3 also allows for secondary antibody recognition when bispecific and multivalent complexes are used as reagents and diagnostics.
For instance, IgM antibodies are known to play an important role in the activation of macrophages and of the complement pathway. Due to the close proximity of its binding sites, IgM has a high avidity for pathogens, including viruses. However, IgM is also known to be difficult for use in rapid immunoassay techniques, whereas IgG antibodies can be readily used in these techniques. For such uses, it would be useful to select for the preferred antibody class, i.e. IgG or IgM.
The expression of all or part of a heterologous heavy chain Cy locus devoid of CH1 will produce optionally some or all IgG isotypes, dependent on the IgG1, IgG2, IgG3 and IgG4 isotypes present in the heterologous IgG locus. Alternatively the heavy chains may comprise CE genes. The resulting IgE molecule might also be used in therapy.
Alternatively, selected mixtures of antibodies may be obtained. For example, IgA and IgM may be obtained when the heavy chain constant region comprises a Cα and a Cμ gene.
Preferably, the heavy chain constant region is of human origin, in particular when the heavy chain-only antibody is to be used for therapeutic applications in humans. Where the heavy chain-only antibodies are to be used for veterinary purposes, the heavy chain constant region is preferably derived from the target organism, vertebrate or mammal in or on which veterinary therapy is to be performed.
When expressed, each heavy chain constant region lacks a CH1 domain. Preferably, the CH1 exon is deleted. Optionally, Cμ and Cδ constant regions may be mutated, deleted or substituted. The presence, for example, of IgM with a functional CH1 domain inhibits B-cell maturation, and consequently limits the productive expression of heavy chain-only IgG (devoid of CH1) within the same locus.
A “heavy chain constant region exon’ (‘CH exon’) as herein defined includes the sequences of naturally occurring vertebrate, but especially mammalian, CH exons. This varies in a class specific manner. For example, IgG and IgA are naturally devoid of a CH4 domain. The term ‘CH exon’ also includes within its scope derivatives, homologues and fragments thereof in so far as the CH exon is able to form a functional heavy chain-only antibody as herein defined when it is a component of a heavy chain constant region.
Optionally, when present, the CH4 or other functional domains maybe engineered or deleted within the transgene provided such a process does not inhibit the intracellular secretory process, B-cell maturation or the binding activity of the resultant antibody. Heavy chain effector molecules may be engineered to be free of functional domains, for example the carboxy-terminal CH4 domains, provided that engineering does not affect secretory mechanisms preventing cell surface assembly and consequently B-cell maturation. Additional features maybe engineered into the locus, for example to improve glycosylation or add function.
Accordingly, the heterologous heavy chain locus is designed to produce preferred classes or mixtures of heavy chain-only antibodies depending on the antibody class(es) required, with essentially normal B-cell maturation. The utilisation of camelid V, D and J gene segments and camelid effector regions will produce camelid antibodies with features peculiar to camelid antibodies, such as enlarged CDR3 loops. The use of human V, D and J gene segments will produce human heavy chain-only antibodies lacking the enlarged CDR3 loop.
A “VH domain” in the context of the present invention refers to an expression product of a V gene segment when recombined with a D gene segment and a J gene segment as defined above. Preferably, the VH domain has improved ability to bind antigen as a result of VDJ recombination and somatic mutation. There is no dependency on the presence or absence of the enlarged CDR3 loop peculiar to the camelid species. The VH domain is able to bind antigen as a monomer. Any likelihood of combining with a VL domain when expressed as part of a soluble heavy chain-only antibody complex has been eliminated by removal of the CH1 exon (see [25]).
The VH domain alone can also be engineered with diverse protein domains to produce fusion proteins for targeted therapeutic and diagnostic purposes, for example with toxins, enzymes and imaging agents.
The VH domain coding sequences may be derived from a naturally occurring source or they may be synthesised using methods familiar to those skilled in the art.
The properties of the VH domain may be altered or improved by selecting or engineering V, D and/or J gene segments which encode sequences with the required characteristics.
As indicated above, some of the 39 functional human VH regions may not be suitable for the production of heavy chain-only antibodies. Several studies have been carried out in the prior art in an attempt to improve various antibody characteristics [2629]. With regard to specific VH region characteristics, Dolk et al., [30] used phage display techniques to generate heavy chain-only antibodies showing improved stability in the harsh conditions associated with anti-dandruff shampoo.
The transgenic non-human mammal is preferably a rodent such as a rabbit, guinea pig, rat or mouse. Mice are especially preferred. Alternative mammals such as goats, sheep, cats, dogs or other animals may also be employed. Preferably, the mammal is a mouse.
Preferably transgenic non-human animals are generated using established oocyte injection technology alone. Where established, ES cell technology or cloning may also be used.
Advantageously, antibody heavy and optionally light chain loci endogenous to the mammal are deleted or silenced when a heavy chain-only antibody is expressed according to the methods of the invention.
The methods of generating heavy chain-only antibodies as described in the above aspects of the invention may be of particular use in the generation of antibodies for human therapeutic use, as often the administration of antibodies to a species of vertebrate which is of different origin from the source of the antibodies results in the onset of an immune response against those administered antibodies. The antibodies produced according to the invention have the advantage over those of the prior art in that they are of substantially a single or known class and preferably of human origin. Antibodies are of high affinity resulting from a combination of VDJ recombination and affinity maturation in vivo. Accordingly, a further aspect of the invention provides a transgenic non-human mammal comprising more than one heterologous VH heavy chain locus as defined above. Preferably, the transgenic non-human mammal may be engineered to have a reduced capacity to produce antibodies that include light chains.
Antibody-producing cells may be derived from transgenic non-human mammals as defined herein and used, for example, in the preparation of hybridomas for the production of heavy chain-only antibodies as herein defined. In addition or alternatively, nucleic acid sequences may be isolated from these transgenic non-human mammals and used to produce VH domain heavy chain-only chain antibodies or bi-specific/bi-functional complexes thereof, using recombinant DNA techniques which are familiar to those skilled in the art.
Alternatively or in addition, antigen-specific heavy chain-only antibodies may be generated by immunisation of a transgenic non-human mammal as defined herein. Accordingly, the invention also provides a method for the production of heavy chain-only antibodies by immunising a transgenic non-human mammal as defined above with an antigen. Antibodies and fragments thereof may be may be isolated, characterised and manufactured using well-established methods known to those skilled in the art. These antibodies are of particularly use in the methods described in PCT/GB2005/00292.
The invention is now described, by way of example only, in the following detailed description which refers to the following figures.
As discussed above, Janssens et al. [15] have developed methods for the derivation of heavy chain-only antibodies in transgenic mice. For further details of the methods and experiments described herein, the skilled person should refer to Janssens et al.[15], which is incorporated herein by reference.1
Methods ConstructsA genomic cosmid library was made from peripheral blood cells of Lama glama using standard methods. Two different germline VHHs were chosen based on their sequence, an open reading frame without stop codon and the presence of hydrophilic amino acid codons at positions 42, 50 and 52 according to Lefranc numbering [32] and one with and one without a hydrophilic amino acid at position 49. One is identical to IGHV1S1 (acc.num. AF305944) and the other has 94% identity with IGHV1S3 (acc. num.AF305946). Two clones were selected from the human genomic Pac library RPCI-11 (BACPAC Recource Center, USA): clone 1065 N8 containing human heavy chain D and J regions, Cμ and Cδ and clone 1115 N15 containing the C γ3 gene. Bac clone 11771 from a different human genomic library (Incyte Genomics, CA, USA) was used as a source of Cγ2 gene and the Ig heavy chain LCR [33]. Using standard techniques, the Cγ3 and Cγ2 genes were subcloned separately into pFastBac (Invitrogen). The single point mutation (G to A) [34] or a complete deletion of CH1 exon was achieved by homologous recombination [35]. Similarly frt and lox P sites were introduced in front of the Cμ switch region and a second lox P site was placed in front of the Cγ2 switch region, resulting in MGS or MGA.
In order to obtain the GS or GΔ constructs, the MGS or MGΔ vector (
The 220 Kb MGS or MGΔ or MΔGΔ fragments, 150 Kb GS or GΔ fragments (
Total RNA was isolated using Ultraspec RNA isolation system (Biotecx Laboratories, Houston). cDNA was synthesized using reverse transcriptase (Superscript II, Life technology) and an oligo (dT) primer. PGR was performed using following primers: LVHHfw: 5’-AGACTCTCCTGTGCAGCCTCTGG-3′(SEQ ID NO:6) in combination with HINGEIgG2rv: 5′CACTCGACACAACATTTGCGCTC-3′(SEQ ID NO:7) or hIgMCH2rv: CACTTTGGGAGGCAGCTCAGC-3′ (SEQ ID NO: 8) Amplification was for 30 cycles with denaturation at 94° C. for 30s, annealing at 60° C. for 30s and extension at 72° C. for 1 min. PGR products were cloned into pGEM T easy vector (Promega) and sequenced using T7 or SP6 primers.
Flow Cytometric Analyses:Single cell suspensions were prepared from lymphoid organs in PBS, as described previously45. Approximately 1×106 cells were incubated with antibodies in PBS/0.5% bovine serum albumin (BSA) in 96 well plates for 30 min at 4° C. Cells were washed twice in PBS/0.5% BSA. For each sample, 3×104 events were scored using a FACScan analyzer (Becton Dickinson, Sunnyvale, Calif.). FACS data were analyzed using CellQuest version 1.0 computer software. Four-color analysis was done on a Becton Dickinson FACS Calibur. Most antibodies used have been described [36]; FITC conjugated anti-human IgG and anti human IgM were purchased from Sigma (Zwijndrecht, NL).
Ig Gene Rearrangement AnalysisSingle cell suspensions were made from spleens and livers of wt mice MΔGΔ and GΔ transgenic mice. B cells were positively selected using MACS CD45 (B220) MicroBeads (Miltenyi Biotec, Germany) on an Automacs separator according to the manufacturer's instructions to −90% purity [37]. Genomic DNA was Hind III digested and blotted onto Hybond nylon filters. The filter was hybridized with a 32P radiolabeled JK probe (obtained by PGR amplification from genomic DNA over JKI and JKS regions) and 32P radiolabeled carbonic anhydrase II (CAII) probe. Liver DNA was run to show the signals of the K germline configuration (2.8 Kb band). The CAII probe, which hybridizes to a 4 kb band was used as a loading control. Filters were scanned on a Tyfoon 9200 (Amerscham Biosciences). The intensity of germ line JK band was quantified using Image Quant 5.2 software, normalized to that of the loading control, and expressed as a percentage of the control liver DNA (which is 100%). PGR primers used on genomic DNA from hybridomas for amplification of different rearrangement events were as follows:
Preparation of target DNA: Monoclonal hybridoma cells were cultured in DMEM/10% FCS and embedded in agarose as described by Heiskanen [38]. Lungs from a mouse of the GΔ transgenic line 1 were collected and a single cell suspension was made. The embedded cells were treated with proteinase K and Rnase H. Mechanically extended DNA was prepared on poly-L-lysine slides (Sigma) using a microwave oven and the edge of another slide.
Probes: To detect rearranged and non-rearranged copies of the GΔ transgene, DNA fragments were purified. A 2.3 kB SpeI and a 3.6 kB SpeI-BssHII fragment for hybridizing the region between VHH and D, and a 5.9 kB BamHI-SpeI fragment or the low copy Bluescript plasmid containing the IgH 3′LCR (16 kB) for LCR detection. The probes were labeled by nick-translation with biotin-11-dUTP (Roche) or digoxigenin-11-dUTP (Roche). Prior to pipetting the probes on the slides, they are denatured by for 5 minutes at 90° C., 5 minutes on ice, and 45 minutes at 37° C. In situ hybridization: The hybridization mixture contained 50% formamide, 2×SSC, salmon sperm DNA (200 ng/μl), 5×Denhardt's, 1 mM EDTA, and 50 mM sodium phosphate, pH 7.0. Hybridization of the probes is done by pipetting 25p1 mixture onto the slides, and covering with a 24×32-mm cover slip. To denature the probes and target sequences the slides were put on an 80° C. heating plate for 2 minutes. The probes hybridize overnight at 37° C. in a humidified chamber (humidifier is 50% formamide, 2×SSC). Post hybridization washes were performed as described [39].
Immunological detection of the hapten-labeled probes: The digoxigenin probe was detected with sheep-anti-digoxigenin (1:500, Sigma), fluorescein-conjugated rabbit-antisheep (1:500, Sigma), and fluorescein-conjugated goat-anti-rabbit (1:500, Sigma). The biotin probe was detected with Texas Red-conjugated avidin (1:500, Sigma) and biotinconjugated goat-anti-avidin (1:500, Boehringer). This step was repeated twice. All incubations and washes were performed as described48. After staining the slides were dehydrated in a graded series of ethanol (70, 90, and 100%) 5 minutes each step at room temperature. Cells or DNA was embedded in 25 μl anti-fading embedding medium Vectashield (Vector Laboratories). Visualization was done with a Leica DMRBE fluorescent microscope using a 100× objective.
Immunization and Hybridoma Production8 weeks old mice were immunized with 5-20 μg of antigen with Specol adjuvant (IDDLO, Lelystadt, NL) or with preformulated DKTP vaccine s.c. on days 0, 14, 28, 42 and i.p. on day 50. Blood was taken on day 0, 14 and 45. Spleen cells were fused with Sp2-0-Ag14 myeloma cells line (gift from R. Haperen) on day 56 using a ClonalCellTMHY kit (StemCell Technologies, Canada) according to the manufacturer's instructions. DKTP vaccine was obtained from the Netherlands Vaccine Institute (Bilthoven, NL).
sdAB Library Construction and Screening
Total RNA was isolated from spleens of DKTP immunized single copy GΔ and TNF a immunized MΔGΔ mice using an Ultraspec RNA isolation system (Biotecx Laboratories Inc, Houston, Tex., USA). cDNA was made using oligo (dT) primer. DNA fragments encoding VHHDJ fragments were amplified by PGR using specific primers: vhl back Sfi I primer [40-42] in combination with hIgG2hingrev primer (5′-A ATCTGGGCAGCGGCCGCCTCG ACACAACATTTGCGCTC-3′ (SEQ ID NO: 15)) or CH2huIgMrev primer (5′-TGGGACGAAGACGGCCGCTTTGGGAGGCAGCTCGGCAAT-3′ (SEQ ID NO: 16)). The amplified VHHDJs (˜400 bp) were Sfi I/Not I digested, gel purified and cloned into Sfi I/NotI digested phagemid pHEN derived vector. Transformation into TG1 electro-competent cells (Stratagene La Jolla, USA) yielded in a human single domain antibody library. Two rounds of selection were performed using panning on DKTP vaccine antigens adsorbed onto plastic (immunotubes coated with undiluted vaccine) or purified human TNFα (Biosource International, USA).
Immunocytochemistry and Western BlotsCells of the tet-on cell line transfected with a marker plasmid that responds to the presence of rtTA were grown on a slide. After a 24 hrs doxycycline induction, the cells were fixed in 4% paraformaldehyde/PBS and permeabilized in 0.5% Triton-X-100/PBS. The HCAb against rtTA was used in a 1:50 dilution, followed by goat anti human-IgG FITC staining (Sigma 1:500 dilution). The marker protein was detected as described previously51. Western blots were standard using goat anti human IgG-HRP (Sigma, 1/2500 dilution), human IgM-HRP (Sigma, 1/2500 dilution).
Superose 6 Gel Filtration.Size fractionation of MΔGΔ mouse serum and human control serum was carried out using an AKTA FPLC apparatus (Amersham Biosciences, Piscataway N.J.) with a Superose 6 10/30 column equilibrated in 200 mM KCl/20 mM HEPES-KOH pH 7.9/1 mM MgCl2/0.5 mM EGTA/20% glycerol. Using a flow of 100 μl/min, fractions of 500 μl were collected, precipitated with 100% trichloroacetic acid and analyzed by SDS-PAGE (under reducing conditions) followed by Western immunoblotting.
BIAcore Measurements.Experiments were carried out on a BIAcore 3000 surface plasmon resonance biosensor (Biacore AB, Uppsala, Sweden). Purified proteins were immobilized on a CMS sensor chip to a level of 3000 resonance units (RU, arbitrary binding response units) with the standard NHS-EDC kit supplied by the manufacturer. Antibodies were passed over the immobilized antigens at a constant flow rate of 40 micrograms per ml in 10 mM Hepes, pH 7.4, 150 mM NaCl, 2 mM EDTA, 0.005% Tween 20. The response at equilibrium was recorded and curve fitting was used to obtain the equilibrium dissociation constants, using the manufacturer's BIA evaluation software.
Results The Camelid Like CH1 Splice Mutation is Insufficient for Exon Skipping in the Human Heavy Chain Locus.It is not known whether the generation of HCAb (IgG2 and IgG3) in camelids involves an IgM+ intermediate step. We therefore first generated two hybrid human loci, one locus (MGS) with a human Cμ, Cδ, Cγ2 and Cγ3 constant regions and one with only human Cγ2 and Cγ3 (
To overcome the CHI splicing problem, we generated 3 new constructs (
MGΔ mice were unable to rescue B cell development in a μMT background, whereas the GΔ and MΔGΔ constructs efficiently rescued B cell development. The rescue of B220/CD19 positive cells was between 30-100% in the different lymphoid compartments independent of copy number (
During the developmental progression of large cycling into small resting pre-B cell the expression of specific cell surface markers is downregulated in a pre-BCR-dependent fashion [36], To investigate the capacity of human HCAb to functionally replace the pre-BCR, the expression of various markers was analysed by FACS. Pro-B cells express high levels of cytoplasmic SLC, IL-7R and CD43, which are downregulated upon pre-BCR expression and absent in mature B cells (
The human Ig+ B cells from MΔGΔ/μMT or GΔ/μMT mice have low levels of SLC and IL-7R, indicating that the human single chain IgG and IgM receptors functionally replace the murine pre-BCR in the downregulation of SLC and IL-7R. For CD43 this appears to be the case only in GΔ mice, but the persistence of CD43 expression in MΔGΔ mice could be related to the finding of increased B-1 B cell differentiation in these mice. Likewise, CD2 and MHC class II expression is induced, as in normal pre-BCR signalling. The levels of the IL-2R/CD25, transiently induced at the pre-B cell stage, are very low on mature MΔGΔ or GΔ/μMT B cells and comparable to those of mature wt B cells (
Collectively, these results show that human HCAb IgG and IgM functionally replace murine (pre-)BCR during B cell development with respect to the expression of developmentally regulated markers. Ig L chain is not induced (see below). cDNA analysis of BM RNA shows usage of both VHH segments for VDJ recombination, absence of CH1, and importantly a large diversity in the CDR3 region (
A number of hybridomas were made from the MΔGΔ and GΔ lines after immunisation, in particular of the five copy GΔ linel (see below). Sequence analysis showed that more than one rearrangement could take place in the multicopy GΔ loci. Of the 5 different 5 copy hybridomas analysed, one (G20) rearranged one copy which was in frame; two hybridomas (T7 and T12) had 2 rearrangements each with one out of frame in both; one hybridoma (T3) had two in frame rearrangements (J2 and J4); while one hybridoma (T1) had 4 rearrangements with 2 in frame (J2 and J4).
T1 and T3 express two productive mRNA's, that were confirmed by mass spectrometry of the secreted antibodies exactly matching the cDNA (not shown). We also carried out DNA stretched fiber FISH and normal DNA FISH on two different hybridomas: G20 (1 rearrangement) and T1 (4 rearrangements), using an LCR probe detecting each copy, and a probe located between VHH and D segment detecting only non-rearranged copies (
To determine the effect of the transgenes on B cell differentiation in μMT mice, we examined spleen B cell subpopulation sizes by flow cytometry, using the CD21/CD23 profiles (
They also form germinal centers in B cell follicles of secondary lymphoid tissues (not shown) comparable to wt during T cell-dependent antibody responses. These are the sites of memory formation and affinity based selection due to somatic hypermutation. In the GΔ mice human IgG positive cells are detected in these germinal centers. We confirmed hypermutation of the human IgG genes by cDNA analysis from B cells present in Payer's patches. (
The GΔ linel mice (
Murine Ig light chain proteins were not detected in the MΔGΔ and GΔ mice by Western blots of serum (not shown, but see
Thus the expression of human HCAb in early B cell development in the BM fails to provide the signal leading to light chain rearrangement. In this context, the HCAb mimic a BCR rather than a pre-BCR, which is likely related to their failure to bind pseudo-light chains in the absence of CHI [61].
Serum Analysis of G Δ/μMT and M ΔG Δ/μMT Mice.Human IgM was present in MΔGΔ serum and human IgG in both MΔGΔ and GΔ mouse serum. In non-immunized adult animals, the human IgM (<50 μg/ml) and IgG (200-1000 μg/ml) is present at levels comparable to those seen in normal mice or transgenic mice carrying a normal human IgH locus [65]. Gel electrophoresis of the serum of all six GΔ mice revealed HCAb IgG's with a MW of −70 kD under non-reducing and −35 kD under reducing conditions, consistent with heavy chain dimers lacking a light chain and each heavy chain lacking the CH1 exon (
The serum of MΔGΔ mice contained multimeric heavy chain-only human IgM. Under reducing conditions (
Serum Analysis of MG Δ Mice
In the periphery and spleen of MGΔ/μMT lines, almost no B220 positive cells (<1% of the wild type) and only occasional small B cell clusters are seen in spleen (
Human IgM and IgGs were below the detection level in a quantitative ELISA assay, but we nevertheless tested whether the MGΔ/μMT mice can respond to immunization. Mice were immunized with human Tumor Necrosis Factor-α (TNF-α) and wt mice developed a strong TNF-α specific antibody response, while in the two MGΔ line 3 mice used, antigen specific human IgGs could not be detected by ELISA or Western blot analysis (not shown).
Immunisation of MΔGΔ and GΔ Mice Results in Antigen Specific Ab ProductionThe GΔ/μMT mice were immunized with E.Coli hsp70, DKTP {Diphteria toxoid, whole cell lysate of Bordetella Pertussis, Tetanus toxoid and inactivated polio virus types 1, 2 and 3) and rtTA [50], while the MΔGΔ mice were immunized with human TNFα. From mice with positive sera by ELISA, individual complete antibodies were isolated using hybridomas or single domain Ab (sdAb) by phage display libraries.
The αhsp70-, tetanus toxoid- and rtTA-specific monoclonals were sequenced after RTPCR of the antibody RNAs (
Here we reported the expression of modified HCAb loci that rescue B cell development in μMT mice resulting in functional HCAb production. These mice can be immunized to produce antigen specific HCAb. As in camelids, removal of CH1 is crucial for HCAb-secretion, but the single camelid (review30) splice mutation at the 31CH1/intron border is not sufficient for CH1 elimination, thus more than this single point mutation is required, at least in the human locus. IgM with CH1 in combination with a VHH blocks B cell development, probably caused by an ineffective assembly of an IgM surface molecule in the context of the pre-BCR. In contrast mice expressing a HCD-like human μ protein develop normal CD43-pre-B cells in a SCID background independent of λ5 [54]. The truncated Cμ proteins are expressed on the B cell surface without associated L chains and are thought to mimic pre-BCR signaling through self-aggregation [55].
Normally BiP chaperones the folding and assembly of antibody molecules by binding to hydrophobic surfaces of the Ig chains that subsequently participate in inter-chain contacts31. The presence of hydrophilic amino acids in FR2 of VHHs, most probably prevents BiP binding to VHH, which needs no (surrogate) light chain to become soluble. At the same time, CH1 provides the interaction with BiP proposed to hold heavy chains in the ER until assembly (replacement of BiP by a light chain) is complete. At the level of pre-B cell receptor, our results suggest that transgenic μ heavy chain pairing with the Vpre protein, as part of a surrogate light chain (SLC) in the noncovalent association with λ5 protein, would not be able to take place when the μ heavy chain containing a CH1 domain is linked to a VHH. Thus the human IgM in MGS and MGΔ transgenic mice would in this regard resemble an incomplete pre-BCR-like complex known to be insufficient to signal proliferative expansion and developmental progression [56, 57]. This may explain why only 30% of the B220 positive cells in BM have intracellular IgM (
When CH1 is absent from Cγ2 and 3 and IgM is removed from the locus there is rescue of B cell development, showing that IgG can functionally replace IgM. An IgG1 receptor, expressed from the pro B cell stage onwards, is able to substitute for IgM in supporting the development of mature CD21+ B cells in Rag2−/− mice [59]. Recently it was also shown that a pre-rearranged camelid IgG2a could partially rescue B cell development in one out two transgenic mice in a μMT (and a CΔ−/−) backgrounds. In our case IgM or IgG lacking CH1 rescue B cell development in 10 out of 10 independent transgenic mouse lines. In addition, we do not observe light chain rearrangement and conclude that light chain expression is not required for further B cell differentiation. The difference in the results obtained here and those of Zou et al. [60] may be explained by the level of expression of the heavy chain locus (and thus signaling) due to the inclusion of the LCR on our constructs. Our results confirm that truncated μ heavy chain protein lacking CH1 [61] or VH and CH1 [62], cannot associate with SLCs and fail to activate K gene rearrangement.
The 5 copy GΔ linel (and other multicopy lines), rescues B cell development to the same extent as the single copy line integrated at the same position in the genome. Interestingly, one or more rearrangements occur in multicopy transgenic loci (
The (multicopy) locus is subject to allelic exclusion in wildtype mice, because BM cells express either mouse or human Ig on the cell surface. There is no significant population of cells expressing both on the cell surface (
If the numbers of loci are counted, the human locus would rearrange first in 5 out of 7 cells. However, endogenous mouse and transgenic human HCAb is expressed almost equally (44/38,
This agrees with the fact that we frequently observe multiple rearrangements of the GΔ locus. Normally, a productive rearrangement downregulates recombination to prevent rearrangement of the other allele. However, the multiple copies on the transgenic allele are present on the same open locus and apparently can be recombined before RAG downregulation. This could be because multiple rearrangements take place at the same time or, if it involves a spatial component (“compartment”), that there would be sufficient time to rearrange another gene in the locus as it would be close before the RAGs are downregulated.
Only when a rearrangement is not productive in wt mice (no signaling and the RAGs stay on) would there be sufficient time for a second locus to be activated, replace the first locus and be rearranged. In favor of this argument would be the observation that other species with multiple loci on the same chromosome have more cells expressing two Abs [64],
Importantly these experiments show that HCAb loci can be expressed successfully in the mouse. Antigen challenge results in the production of high affinity antigen specific human HCAb of different class dependent on the composition of the loci. These antibodies are expressed at levels comparable to those in normal mice or other “normal” human IgH transgenic mice [65], Only two variable regions were used in our experiments yet high affinity antibodies with diverse specificity were successfully isolated to almost all of the totally unrelated proteins we tested, demonstrating the efficiency and efficacy of the diversity generated by CDR3 [66]. Thus having V(D)J recombination and in vivo selection provides a critical advantage over the generation of human single chain antibody fragments from phagemid libraries using phage display39. Hybridomas can be generated easily, which importantly allows the direct cloning and expression of the complete human HCAb or sdAb fragment without the need of phage display and further screening.
Thus these mice open up completely new possibilities for the production of human HCAbs for clinical or other purposes, particularly in light of the evidence4 that HCAbs may recognize epitopes that are barely antigenic for conventional antibodies, such as active sites of enzymes. The restricted number of variable regions may explain why not all of the antigens were recognized; the polio and Diphteria proteins gave no response in GΔ mice, whereas wt control mice did. Surprisingly all of the antibodies had the llamaVHH2 region. This does not include a conserved aminoacid [67] at position 49 in contrast to VHH1 that does have one and should be more soluble.
Nevertheless we expect that the addition of more variable regions in the locus would lead to an even broader repertoire. Whilst it is preferable to avoid multiple copies of the locus on a single allele, it would be advantageous to generate mice containing multiple alleles each comprising a single copy of different VH regions to increase diversity. In such new loci one can use either normally occurring (human) VH regions or VH regions engineered for increased solubility18 and light chain pairing.
In conclusion, we have demonstrated that antigen specific high affinity HCAb of potentially any class can be produced in mice. This technology will allow the production of fully human HCAb of any class or fragments thereof in response to antigen challenge for use as therapeutic or diagnostic agents in man. By using different vertebrate loci our technology also allows for the production of high affinity matured antibodies from any vertebrate for use as reagents, diagnostics or for the treatment of animals.
Example 2Janssens et al. (2006) have shown that a transgenic VH locus recombines properly to produce transgenically coded heavy chain only antibodies and that such a locus is sensitive to allelic exclusion in the presence of the endogenous (mouse) heavy chain immunoglobulin locus. In order to show that the number of VH transgenic loci, that is used for heavy chain only antibody production, can be increased by using the process of allelic exclusion, two transgenic mice containing different heavy chain only loci were crossed resulting in offspring containing both loci. One mouse contained the MGΔ locus (IgM and IgG locus, Janssens et al., 2006), while the other contained the GΔ locus (IgG locus only, Janssens et al., 2006), both mice have the μMT background. Hybridomas were derived from the B cells from the double transgenic offspring and grown in culture by standard methods. A number of the resulting individual monoclonal cell lines were analysed by PGR and Southern blots, which showed that lines containing a productively rearranged MGΔ locus contained a non-rearranged GΔ or a non-productively rearranged GΔ locus. Conversely cell lines containing a productively rearranged GΔ locus contained a non-rearranged or a non-productively rearranged MGΔ locus. Thus the sum of the available VH regions is used in the recombination process.
Examples 3 and 4In a preferred embodiment of the first aspect of the invention all of the number of functional human VH regions is increased by cloning human VH regions (or variants thereof) onto a multiple modified human locus containing the entire DH region, the entire JH region and a combination of the Cμ, Cγ2, Cγ3 and Coo regions and the 3′LCR using those methods described in the previous example and known in the art (Janssens et al 2006). This procedure can be carried out using multiple identical VH regions on separate loci or different VH region on separate loci. The different loci can contain identical heavy chain regions or different heavy chain regions. The example 3 is for a locus with identical VH regions on loci that have a different combination of heavy chain regions, example 4 for two loci with identical heavy chain constant regions but different VH regions. Obviously in both examples additional loci could be added.
Example 3Human VH regions are isolated by PCR amplification of the human genomic DNA using primers that are specific for each selected VH out of the possible 39 functional human VH regions (alternatively human VL regions or TCR V regions or variants of all of these derived by mutagenesis could be used or added). The human VH regions are cloned in sets onto the locus described in the above example (
The functional VH regions may be cloned together, with any multiple on each locus. Initially, 17 functional human VH regions will be cloned together in one set starting with 2 cloned genes per set. To each of these initial constructs, a second set will be added by conventional methodology (e.g. using Xhol-SalI restriction digestion/ligation, ligation of Xhol and SalI compatible sites destroys both). Sets containing 4, 4, 4, 3 and 2 will be linked into one set of 17 genes in a BAG vector. Obviously this procedure could be carried out by combining sets containing other numbers of genes. The above process may be terminated at any point to achieve the desired number of VH regions or extended to achieve a higher number of VH regions.
The entire set (e.g. 17 genes) is cloned into the modified GΔ locus in the unique PI-Pspl site. The Ca region will be cloned into the I-CeuI site of this locus resulting in a AAGA locus capable of producing Iga and IgG (
These final loci are then introduced into separate transgenic mice (preferably with a defective mouse IgH locus such as μMT) as described in the example above. These separate loci are used to generate separate mouse lines, one that would make only IgG and one that would make IgA and/or IgG. These mice are subsequently crossed to bring the total of VH regions available to 34 on two different loci. Crossing these mice to homozygozity for both loci would make 68 VH regions available for recombination. Having multiple copies of an integrated locus would increase this number yet further. The analysis of hybridomas made from the B cells from these mice would be used to show that when a productively rearranged locus is present, the other loci that were bred in, are either non-rearranged or non-productively rearranged due to allelic exclusion by standard procedures.
Example 4Different sets of 1 or more VH regions similarly isolated to the regions described above (or variants thereof derived by mutagenesis) are cloned onto two separate loci by the same methodology as described above. This would result in two different GΔ loci (or variants thereof such as adding Ca). These loci would be introduced into separate mice resulting in separate transgenic lines (for example 2 loci having 10VH domains each,
The above process may be terminated at any point to achieve the desired number of VH regions. The D, JH and constant regions will be added to these VH regions. These final loci can then be introduced into separate transgenic mice (preferably with a defective mouse IgH locus) as described in the example above. Alternatively the position of the lox sites allows the elimination of individual constant regions to generate separate loci that contain or Cμ (IgM) alone, or Cγ2 and Cγ3 (IgG2 and IgG3) alone, or Ca alone (IgA) or combinations thereof. These separate loci are used to generate separate mouse lines that would make either human IgM alone, or IgG alone or IgA alone or combinations thereof.
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Claims
1-34. (canceled)
35. A method for increasing the diversity of VH heavy chain-only antibodies in a transgenic non-human mammal comprising the steps of wherein said VH gene segments do not encode camelid VHH domains, and wherein said heterologous VH heavy chain loci are present on the same or different chromosomes, and the expression of a heterologous VH locus is determined by allelic exclusion.
- a) providing a transgenic non-human mammal whose genome comprises more than one heterologous VH heavy chain locus, wherein each heterologous VH heavy chain locus comprises VH gene segments, D gene segments, and J gene segments, and a gene segment encoding a heavy chain constant region which, when expressed, does not include a functional CH1 domain and
- b) expressing a VH heavy chain-only antibody from at least one of said loci in B-cells,
36. The method of claim 35, wherein each heavy chain locus comprises one VH gene segment.
37. The method of claim 35, wherein each VH gene segment is different from all other VH gene segments.
38. The method of claim 35, wherein the VH gene segments are of human origin.
39. The method of claim 35, wherein the multiple VH heavy chain loci comprise any number or combination of the 39 functional human V gene segments.
40. The method of claim 39, wherein each different VH heavy chain locus is present as a single copy in the genome of the transgenic non-human mammal.
41. The method of claim 35, wherein each VH heavy chain locus comprises from one to forty D gene segments.
42. The method of claim 35, wherein the D gene Segments are human D gene segments.
43. The method of claim 35, wherein each VH heavy chain locus comprises from one to twenty J gene segments.
44. The method of claim 35, wherein the J gene segments are human J gene segments.
45. The method of claim 35, wherein each VH heavy chain locus comprises one or more human VH gene segments, twenty-five functional human D gene segments and 6 human J gene segments.
46. The method of claim 35, wherein each gene segment encoding a heavy chain constant region comprises one or more heavy chain constant region exons of the Cδ, Cγ1-4, Cμ, Cε or Cα1-2 classes, with the proviso that at least one of the heavy chain constant region gene segments does not express a CH1 domain.
47. The method of claim 35, wherein the heavy chain constant region is of human origin.
48. The method of claim 45, wherein the heavy chain constant region is of human origin.
49. The method of claim 35, wherein the transgenic non-human mammal is a rodent.
50. The method of claim 45, wherein the transgenic non-human mammal is a rodent.
51. The method of claim 49, wherein the rodent is a mouse.
52. A transgenic non-human mammal comprising more than one heterologous VH heavy chain locus as defined in claim 35.
53. A transgenic non-human mammal comprising more than one heterologous VH heavy chain locus as defined in claim 45.
54. A method for the production of heavy chain-only antibodies comprising:
- a) immunising a transgenic non-human mammal of claim 52 with an antigen; and
- b) isolating antigen-specific heavy chain-only antibodies.
55. A method for the production of heavy chain-only antibodies comprising:
- a) immunising a transgenic non-human mammal of claim 53 with an antigen; and
- b) isolating antigen-specific heavy chain-only antibodies.
56. A method of producing high affinity, antigen-specific VH heavy chain-only antibodies comprising:
- a) immunising a transgenic non-human mammal according to claim 52 with an antigen;
- b) generating B-cell hybridomas;
- c) selecting cells expressing antigen-specific heavy chain-only antibody; and
- d) isolating antigen-specific heavy chain-only antibody.
57. A method of producing high affinity, antigen-specific VH heavy chain-only antibodies comprising:
- a) immunising a transgenic non-human mammal according to claim 53 with an antigen;
- b) generating B-cell hybridomas;
- c) selecting cells expressing antigen-specific heavy chain-only antibody; and
- d) isolating antigen-specific heavy chain-only antibody.
Type: Application
Filed: Apr 15, 2020
Publication Date: Aug 27, 2020
Inventors: Franklin Gerardus Grosveld (Rotterdam), Richard Wilhelm Janssens (Rotterdam), Roger Kingdon Craig (Sandbach, Cheshire)
Application Number: 16/848,943
