HCMV ENTRY INHIBITORS
Subject matter of the present invention is a soluble PDGFR-alpha-Fc chimera or a PDGFR-alpha derived peptide or an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV.
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Subject matter of the present invention is a soluble PDGFR-alpha-Fc chimera or a PDGFR-alpha derived peptide or an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV.
Human cytomegalovirus (HCMV) is a pathogenic human beta-herpesvirus, which like other beta-herpesviruses can only replicate in its specific host. Primary infection is followed by lifelong latent persistence and occasional reactivation of the virus, which usually goes unnoticed by the infected individual. However, under conditions of insufficient immune responses, HCMV can cause severe or even life threatening disease, e.g. in AIDS patients, transplant recipients, and infected fetuses after intrauterine infection. Antiviral drugs are available but associated with significant adverse effects and the development of resistance (3, 15). Therefore, alternative treatment options are desired.
One powerful antiviral strategy is the inhibition of entry into the cell, and its effectiveness against HCMV is exemplified by the neutralizing activity of anti-HCMV antibodies (5, 12, 13, 23, 26, 30, 31, 36). While the therapeutic use of antibodies may be limited as they are difficult to engineer, other entry inhibitors are also conceivable for HCMV. In case of HIV, small molecules and peptides have already been approved for antiviral therapy (17); a peptide-based entry inhibitor against Hepatitis B virus is in clinical trial (34); and with picorna viruses, an Fc-CAR fusion protein inhibits viral entry and is effective in animal models, but has not yet been developed for clinical use (14, 29, 41).
HCMV is an enveloped virus and has to fuse its membrane with the host membrane for penetration of the nucleocapsid into the cytoplasm, from where it is then transported to the nucleus and releases the viral genome into the nucleoplasm. Several glycoprotein complexes in the envelope of HCMV particles have been described that contribute to entry of HCMV into its target cells and are therefore potential targets of entry inhibitors (7, 8, 20, 22, 24, 27). In analogy to other herpesviruses, homotrimers of glycoprotein B (gB) are assumed to exert the fusion between viral envelope and cellular membrane, while heterotrimers of gH, gL and gO are necessary to promote this fusion process (4, 6, 9, 18, 42). On certain cell types including endothelial and epithelial cells, a pentameric complex is required in addition for effective entry, which consists of gH, gL, and three accessory proteins from the viral UL128 gene (1, 2, 16, 37, 42).
On the cellular side, numerous proteins have been proposed as entry receptors of HCMV, including various integrins, the epithelial growth factor receptor (EGFR) and the platelet-derived growth factor receptor alpha (PDGFR-alpha), but have been controversially discussed (11, 21, 33, 35, 38, 39) (reviewed in (2)).
The inventors surprisingly and unexpectedly found that the extracellular part of PDGFR-alpha is a highly potent entry inhibitor of HCMV in either cell type, and peptides derived from this molecule are also effective, thus providing a rationale for the development of PDGFR-alpha based anti-HCMV therapeutics.
Thus, subject matter of the present invention is a soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the group comprising:
-
- II. a sequence having 90% or more identity to SEQ ID No. 2
- III. a sequence that is a truncated sequence of SEQ ID No. 2 or a sequence having 90% or more identity to said truncated SEQ ID No. 2, said sequence having at least 45 amino acids, and
- IV. variants of sequences according to the aforementioned items I., II., III., with substitutions at one or more of the following positions (numbering is adhered to SEQ ID. No. 1):
- Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
Percentage of sequence identity is calculated for the shortened peptide in case of truncated peptide (i.e. variants). Introduction of additional amino acids are handled as gap in the original sequence, deletions are handled as gap in the modified peptide for calculation of sequence identity. A truncated sequence of a Sequence is a fragment of said Sequence.
Truncated sequence of SEQ ID No. 2 means the sequence of SEQ ID No. 2, wherein certain amino acid (stretches) within said sequence are deleted. SEQ ID No. 3 is e.g. a truncated sequence of SEQ ID No. 2. A truncated sequence of SEQ ID No. 2 is a fragment of said sequence.
A sequence that is a truncated sequence of SEQ ID No. 2 or a sequence having 90% or more identity to said truncated SEQ ID No. 2 has at least 45 amino acids, preferably at least 80 amino acids, more preferably at least 100 amino acids, even more preferred at least 150 amino acids.
“Soluble PDGFR-alpha-Fc chimera” means that the respective PDGFR-alpha derivate can be dissolved in biocompatible solutions, preferably saline, at a concentration of at least 100 N g/ml.
“HCMV” means Human cytomegalovirus.
Also, subject matter of the present invention is a soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to the invention, wherein said soluble PDGFR-alpha-Fc chimera inhibits HCMV entry.
Inhibition of HCMV entry is determined by measuring the reduction of infectivity of HCMV in cell culture assays, as follows:
Infectious cell free HCMV preparations (corresponding to a multiplicity of infection of 1) are pre-incubated with the substance (at variable concentrations) for 2 h at 37° C. The pre-incubated mixture of HCMV and substance is added to cell cultures of choice, including at least a culture of human primary fibroblasts and a culture of human endothelial cells. Cells are incubated with the mixture for 2 h at 37° C. The mixture of HCMV and substance is then replaced with the appropriate cell culture medium and cells are further incubated for at least 16 h at 37° C. HCMV infection of the cells is detected by immunostaining of HCMV immediate early antigens (pUL122/123) with indirect immunofluorescence. The ratio of HCMV-IE antigen-positive cells per total cells is calculated as a readout for the efficiency of viral entry. The EC50 is determined as the concentration of the substance (given in ng/ml) that reduces the fraction of infected cells in any of the tested cell types by 50% as compared to controls in with HCMV has been pre-incubated with medium (minimal essential medium with 5% fetal calf serum) instead of the substance.
If the substance is a PDGFR-alpha-Fc chimera, it is regarded effective if the EC50 in the assay described above is lower than 1000 ng/ml, preferably lower than 100 ng/ml.
If the substance is a peptide, it is regarded effective if the EC50 in the assay described above is lower than 10 nmol/ml, preferably lower than 0.5 nmol/ml.
If the substance is an antibody, it is regarded effective if the EC50 in the assay described above is lower than 5 μg/ml, preferably lower than 0.5 μg/ml.
In one embodiment of the invention a soluble PDGFR-alpha-Fc chimera is used for inhibiting HCMV entry in a method of treatment in a subject that has been infected by HCMV or used for prophylaxis of HCMV infection in a method of treatment of a subject that has not yet been infected by HCMV according the invention wherein said soluble PDGFR-alpha-Fc chimera has at least one of the following mutations or deletions within SEQ ID No. 2 (numbering is adhered to SEQ ID No. 1):
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- i. Deletion of aa 150-189,
- ii. Deletion of aa 150-234,
- iii. Deletion of aa 150-290,
- iv. Deletion of aa 150-524,
- v. Deletion of aa 24-100 and deletion of aa 150-234,
- vi. SEQ ID No. 2 having at least one point mutation in at least one of the protein regions as specified above under items i., ii., iii., iv., v . . . .
In another embodiment of the invention a soluble PDGFR-alpha-Fc chimera is used that is suitable for inhibiting HCMV entry in a method of treatment in a subject that has been infected by HCMV or used for prophylaxis of HCMV infection in a method of treatment of a subject that has not yet been infected by HCMV according the invention wherein said soluble PDGFR-alpha-Fc chimera has at least one of the following mutations or deletions within SEQ ID No. 2 (numbering is adhered to SEQ ID No. 1):
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- i. Deletion of amino acids M133-I139 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids M133-I139; further it is possible also to delete one or two or three or four or five amino acids less than amino acids M133-I139 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids M133-I139),
- ii. Deletion of amino acids V184-G185 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall be given here as examples for all possible combinations of additional deletions at the respective ends of amino acids V184-G185; Furthermore, it is possible also to delete one amino acid less than amino acids V184-G185 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids V184-G185),
- iii. Deletion of amino acids N204-Y206 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids N204-Y206; furthermore, it is possible also to delete one or two amino acid less than amino acids N204-Y206 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids N204-Y206);
- iv. Deletion of amino acids N240-L245 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids N240-L245; further it is possible also to delete one or two or three or four or five amino acids less than amino acids N240-L245 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids N240-L245),
- v. Deletion of amino acids T259-E262 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids T259-E262; further it is possible also to delete one or two or three or four amino acids less than amino acids T259-E262 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids T259-E262);
- vi. Deletion of amino acids K270-T273 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids K270-T273; further it is possible also to delete one or two or three amino acids less than amino acids K270-T273 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids K270-T273);
- vii. Deletion of amino acids Q294-E298 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions, e.g., one N-terminal plus one C-terminal deletions; two N-terminal plus three C-terminal deletions, three N-terminal and five C-terminal deletions shall are given here as examples for all possible combinations of additional deletions at the respective ends of amino acids Q294-E298; further it is possible also to delete one or two or three or four amino acids less than amino acids Q294-E298 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids Q294-E298);
- viii. SEQ ID No. 2 having at least one point mutation in at least one of the protein regions as specified above under items i., ii., iii., iv., v., vi, or vii.
One embodiment is a soluble truncated or mutated version of PDGFR-alpha-Fc chimera that is used for inhibiting HCMV entry in a method of treatment in a subject that has been infected by HCMV or for use in prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to the invention, wherein said soluble truncated or mutated version of PDGFR-alpha-Fc chimera inhibits HCMV entry and shows reduced ability to inhibit the biological activity of PDGF-type growth factors as compared to the inhibitory effect of wild type chimeras.
A soluble truncated or mutated version of PDGFR-alpha-Fc chimera may be selected from the group comprising:
-
- I. a sequence having 90% or more identity to SEQ ID No. 2,
- II. a sequence that is a truncated sequence of SEQ ID No. 2 or a sequence having 90% or more identity to said truncated SEQ ID No. 2 said sequence having at least 45 amino acids,
- III. variants of sequences according to the yet aforementioned items I. and II., with substitutions at one or more of the following positions (numbering is adhered to SEQ ID. No. 1):
- Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
A wild type chimera is a chimera of:
The biological activity of PDGF-type growth factors is determined as the induction of cell proliferation in PDGF-sensitive cell lines such as human fibroblasts. The ability to inhibit this biological activity is determined as the degree by which induction of proliferation is reduced when PDGFs have been pre-incubated with the substance for 2 h at 37° C., as compared to PDGFs alone. The degree of proliferation can be measured in standard MTT assay as described previously (19). In addition or alternatively the direct binding of PDGF-type growth factors to the soluble truncated or mutated version of PDGFR-alpha-Fc chimera (and the PDGFRalpha derived peptides) is measured via suitable techniques e.g. thermophorese using the Nanotemper technology; Biacore. and the like.
Also, subject matter of the present invention is a soluble PDGFR-alpha-Fc chimera that is used for inhibiting HCMV entry in a method of treatment in a subject that has been infected by HCMV or for use in prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to the present invention, wherein said soluble PDGFR-alpha-Fc chimera is administered to a pregnant woman who is infected by HCMV, or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV, or a solid organ transplant recipients infected with HCMV. It may be also used in a method of treatment in a subject that has been infected by HCMV, wherein said soluble PDGFR-alpha-Fc chimera is administered to said subject who is also HIV-infected.
In one embodiment a soluble PDGFR-alpha-Fc chimera according to the present invention comprises a sequence selected from the group comprising:
In one embodiment of the present invention a soluble PDGFR-alpha-Fc chimera of the present invention comprises further a sequence of human Fc that is SEQ ID No. 8:
Subject matter of the present invention is a PDGFR-alpha derived peptide for inhibiting HCMV entry that is for use in a method of treatment in a subject that has been infected by HCMV or for use in a method prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said peptide is selected from a group comprising SEQ ID No. 9 (between 10 aa and 60 aa in length), SEQ ID No. 10, SEQ ID No. 11, or SEQ ID NO: 12, or SEQ ID No. 13, or consists of parts of the following sequences:
-
- I. SEQ ID No. 9 that is VLEVSSASAAHTGLYTCYYNHTQTEENELE GRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHN,
- II. SEQ. ID No. 10, also referred to as IK40, that is IKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMK,
- III. SEQ ID No. 11, also referred as GD30, that is GRHIYIYVPDPDVAFVPLGMTDYLVIVEDD),
- IV. SEQ ID No. 12 (also referred to as GT40) that is GRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTT,
- V. SEQ ID No. 13 (also referred to as NV40) that is NVYALKATSELDLEMEALKTVYKSGETIVVTCAVFNNEVV,
- VI. a peptide fragment of SEQ ID No. 9, SEQ ID No. 10, SEQ ID NO: 11, or SEQ ID No. 12, or SEQ ID No. 13, any of these having at least 10 amino acids, and
- VII. a variant of the yet aforementioned items I., to VI. that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9, SEQ ID No. 10, SEQ ID NO: 11, or SEQ ID No. 12, or SEQ ID No. 13, or a peptide that exhibits at least 80% sequence identity to the peptide fragment of SEQ ID No. 9, SEQ ID No. 10, SEQ ID NO: 11, SEQ ID No. 12, or SEQ ID No. 13, having at least 10 amino acids.
any of these having at least 10 amino acids, and - VII. a variant of the yet aforementioned items I., to VI. that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9, SEQ ID No. 10, SEQ ID NO: 11, or SEQ ID No. 12, or SEQ ID No. 13, or a peptide that exhibits at least 80% sequence identity to the peptide fragment of SEQ ID No. 9, SEQ ID No. 10. SEQ ID NO: 11, SEQ ID No. 12, or SEQ ID No. 13, having at least 10 amino acids.
Subject matter of the present invention is a PDGFR-alpha derived peptide for inhibiting HCMV entry used for a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to the present invention, wherein said peptide inhibits HCMV entry. In some embodiments, said PDGFR-alpha derived peptide is a fragment derived from domain 1, domain 2, or domain 3 of PDGFR-alpha as exemplified by the peptides according to SEQ ID Nos. 9 to 13.
Subject matter of the present invention is a soluble PDGFR-alpha derived peptide for inhibiting HCMV entry used in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to the present invention, wherein said peptide is administered to a pregnant woman that is infected by HCMV or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV or at risk of HCMV infection, or a solid organ transplant recipient infected with HCMV or at risk with HCMV infection. In some embodiments, said PDGFR-alpha derived peptide is a fragment derived from domain 1, domain 2, or domain 3 of PDGFR-alpha as exemplified by the peptides according to SEQ ID Nos. 9 to 13.
Subject matter of the present invention are also delivery vectors for transferring a nucleic acid sequence encoding a PDGFR-alpha derived peptide or fragment thereof suitable for inhibiting HCMV entry, wherein said nucleic acid comprises a signal sequence that enables the packing of said peptide or fragment thereof into vesicles, wherein the peptide or fragment is released from the cells to bind to HCMV and inhibit infection of target cells. The object of the present invention is, thus, to provide delivery vectors for transferring a nucleic acid sequence to a cell in vitro, ex vivo or in vivo. Object of the invention is in particular a vector-based therapy for treatment and/or prophylaxis and/or prevention of spreading in a host of HCMV infection with PDGFR-alpha derived peptides or fragments thereof. The inventive delivery vectors comprising a nucleic acid encoding PDGFR-alpha derived peptides or fragments thereof shall transduce host cells, which are capable of expressing the peptides and which are suitable for expression of said peptides to thereby inhibiting HCMV infection, attachment, membrane fusion or propagation of the virus. This means as an example that said delivery vector may comprise a DNA sequence encoding a PDGFR-alpha peptide as defined herein and expresses the respective peptide(s) or fragment(s) thereof at a concentration that is sufficient to inhibit infections of target cells. In some embodiments, said PDGFR-alpha derived peptide is a fragment derived from domain 1, domain 2, or domain 3 of PDGFR-alpha as exemplified by the peptides according to SEQ ID Nos. 9 to 13.
The delivery vectors produced according to the present invention are useful for the delivery of nucleic acids to cells in vitro, ex vivo, and in vivo. In particular, the delivery vectors can be advantageously employed to deliver or transfer nucleic acids to animal, more preferably mammalian, cells.
Suitable vectors include viral vectors (e.g., retrovirus, lentivirus, alphavirus; vaccinia virus; adenovirus, adeno-associated virus, or herpes simplex virus), lipid vectors, polylysine vectors, synthetic polyamino polymer vectors that are used with nucleic acid molecules, such as plasmids, and the like.
Any viral vector that is known in the art can be used in the present invention. Examples of such viral vectors include, but are not limited to vectors derived from: Adenoviridae; Birnaviridae; Bunyaviridae; Caliciviridae, Capillovirus group; Carlavirus group; Carmovirus virus group; Group Caulimovirus; Closterovirus Group; Commelina yellow mottle virus group; Comovirus virus group; Coronaviridae; PM2 phage group; Corcicoviridae; Group Cryptic virus; group Cryptovirus; Cucumovirus virus group Family ([PHgr]6 phage group; Cysioviridae; Group Carnation ringspot; Dianthovirus virus group; Group Broad bean wilt; Fabavirus virus group; Filoviridae; Flaviviridae; Furovirus group; Group Germinivirus; Group Giardiavirus; Hepadnaviridae; Herpesviridae; Hordeivirus virus group; Illarvirus virus group; Inoviridae; Iridoviridae; Leviviridae; Lipothrixviridae; Luteovirus group; Marafivirus virus group; Maize chlorotic dwarf virus group; icroviridae; Myoviridae; Necrovirus group; Nepovirus virus group; Nodaviridae; Orthomyxoviridae; Papovaviridae; Paramyxoviridae; Parsnip yellow fleck virus group; Partitiviridae; Parvoviridae; Pea enation mosaic virus group; Phycodnaviridae; Picomaviridae; Plasmaviridae; Prodoviridae; Polydnaviridae; Potexvirus group; Potyvirus; Poxviridae; Reoviridae; Retroviridae; Rhabdoviridae; Group Rhizidiovirus; Siphoviridae; Sobemovirus group; SSV I-Type Phages; Tectiviridae; Tenuivirus; Tetraviridae; Group Tobamovirus; Group Tobravirus; Togaviridae; Group Tombusvirus; Group Tobovirus; Totiviridae; Group Tymovirus; and Plant virus satellites. Protocols for producing recombinant viral vectors and for using viral vectors for nucleic acid delivery can be found in (Ausubel et al., 1989) and other standard laboratory manuals (e.g., Rosenzweig et al. 2007). Particular examples of viral vectors are those previously employed for the delivery of nucleic acids including, for example, retrovirus, lentivirus, adenovirus, adeno-associated virus (AAV) and other parvoviruses, herpes virus, and poxvirus vectors. The term “parvovirus” as used herein encompasses the family Parvoviridae, including autonomous parvoviruses, densoviruses and dependoviruses. The term AAV includes all vertebrate variants especially of human, primate, other mammalian, avian or serpentine origin. The autonomous parvoviruses include members of the genera Parvovirus, Erythrovirus, Bocavirus, Densovirus, Iteravirus, and Contravirus. Exemplary autonomous parvoviruses include, but are not limited to, minute virus of mice, bovine parvovirus, canine parvovirus, chicken parvovirus, feline panleukopenia virus, feline parvovirus, goose parvovirus, HI parvovirus, muscovy duck parvovirus, bocavirus, bufavirus, tusavirus and B19 virus, and any other virus classified by the International Committee on Taxonomy of Viruses (ICTV) as a parvovirus. Other autonomous parvoviruses are known to those skilled in the art. See, e.g. (Berns et al. 2013).
In one embodiment of the invention said delivery vector comprises in addition a recombinant adeno-associated virus (AAV) vector genome or a recombinant lentivirus genome.
In one particular embodiment of the invention said delivery vector comprises in addition a recombinant AAV vector, wherein preferably said vector is a serotype of human or primate origin.
In one particular embodiment of the invention said delivery vector comprises in addition a recombinant adeno-associated virus (AAV) vector genome, wherein said vector is a human serotype vector selected from the group comprising serotypes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, rh10, 11, 12, 13, 14, serpentine AAV, ancestral AAV, or AAV capsid mutants derived thereof, preferably but not exclusively of AAV serotype 1 or 2.
In one particular embodiment of the invention said delivery vector is a single stranded AAV vector or a self-complimentary (or dimeric) duplex vector.
In one particular embodiment of the invention said delivery vector is a delivery vector as described above, wherein the DNA sequence encoding a PDGFR-alpha-derived peptide or fragment as defined herein is operatively linked to expression control elements comprising a promoter and/or enhancer that produces sufficient expression of the gene product of interest to obtain a therapeutic effect.
For example, the encoding nucleic acid may be operably associated with expression control elements, such as transcription/translation control signals, origins of replication, polyadenylation signals, and internal ribosome entry sites (IRES), promoters, enhancers, and the like. It will further be appreciated that a variety of promoter/enhancer elements may be used depending on the level and tissue-specific expression desired. The promoter/enhancer may be constitutive or inducible, depending on the pattern of expression desired. The promoter/enhancer may be native or foreign and can be a natural or a synthetic sequence. By foreign, it is intended that the transcriptional initiation region is not found in the wild-type host into which the transcriptional initiation region is introduced. Promoter/enhancer elements that are functional in the target cell or subject to be treated are most preferred. Mammalian promoter/enhancer elements are also preferred. The promoter/enhancer element may express the transgene constitutively or inducibly.
Exemplary constitutive promoters include, but are not limited to a Beta-actin promoter, a cytomegalovirus promoter, a cytomegalovirus-enhancer/chicken beta-actin hybrid promoter, and a Rous sarcoma virus promoter. Inducible expression control elements are generally employed in those applications in which it is desirable to provide regulation over expression of the heterologous nucleic acid sequence(s). Inducible promoters/enhancer elements for gene delivery include neuron-specific, brain-specific, muscle specific (including cardiac, skeletal and/or smooth muscle), liver specific, bone marrow specific, pancreatic specific, spleen specific, and lung specific promoter/enhancer elements.
Other inducible promoter/enhancer elements include drug-inducible, hormone-inducible and metal-inducible elements, and other promoters regulated by exogenously supplied compounds, including without limitation, the zinc-inducible metallothionein (MT) promoter; the dexamethasone (Dex)-inducible mouse mammary tumor virus (MMTV) promoter; the T7 polymerase promoter system (see WO 98/10088); the ecdysone-inducible insect promoter (No et al, 1996); the tetracycline-repressible system (Gossen and Bujard, 1992); the tetracycline-inducible system (Gossen et al., 1995); see also (Harvey et al., 1998); the RU486-inducible system (Wang, DeMayo et al., 1997); (Wang, Xu et al., 1997); and the rapamycin-inducible system (Magari et al., 1997).
In a particular embodiment of the invention the promoter and/or enhancer is selected from the group comprising constitutively active promoters e.g. CMV (cytomegalovirus immediate-early gene enhancer/promoter)- or CBA promoter (chicken beta actin promoter and human cytomegalovirus IE gene enhancer), or inducible promoters comprising Gene Switch, tet-operon derived promoter, preferably but not exclusively of human origin.
In a particular embodiment of the invention said delivery vector further comprises a posttranscriptional regulatory element, preferably the woodchuck-hepatitis-virus-posttranscriptional-regulatory element. Other possible posttranscriptional regulatory elements are known to a person skilled in the art.
Subject of the present invention is furthermore a recombinant gene therapy vector comprising the foreign, therapeutic coding sequence, which is flanked by genetic elements for its expression and by virus-specific cis elements for its replication, genome packaging, genomic integration etc. The said virus genome is encapsidated as virus particle consisting of virus-specific proteins as in the case of AAV. In the case of lentivirus vectors the viral genome and virus-specific proteins, like reverse transcriptase and others are encapsidated into lentivirus capsids. These are enveloped by a lipid bilayer into which virus-specific proteins are embedded. Liposomes comprise the above described nucleotide sequences or entire DNA backbones including all regulatory elements of the gene therapy-, or delivery vector.
Examples of liposomes include DSPC (1,2-distearoyl-sn-glycero-3-phosphocholine, cholesterol, DSPE-PEG2000 (1,2-distearoyl-sn-glycero-3-phosphoethanol-amine-N-[amino(polyethylene glycol)-2000], or DSPE-PEG2000-mal (1,2-distearoyl-sn-glycero-3-phosphoethanol-amine-N-[maleimide(polyethylene glycol)-2000] or variants comprising sphingomyelin/cholesterol and phosphatidic acid.
In one particular embodiment of the invention said delivery vector comprises in addition a recombinant adeno-associated virus (AAV) vector genome and said recombinant AAV (rAAV) vector genome is encapsidated in an AAV capsid.
Adeno-associated viruses (AAV) have been developed as nucleic acid delivery vectors. For a review, see (Muzyczka, 1992). AAV are helper-dependent parvoviruses requiring a helper virus, typically adenovirus or herpesvirus for productive replication. AAV represent a growing family of currently 14 naturally occurring serotypes of human or primate origin. AAVs of other mammalian species, or of avian or insect origin have been described (see Berns et al., 2013). The AAVs have small icosahedral capsids, 18-26 nanometers in diameter and contain a single-stranded DNA genome of 4-5 kilobases in length. AAV encapsidates both AAV DNA strands, either the sense or antisense DNA strand is incorporated into one virion. The AAV genome carries two major open reading frames encoding the genes rep and cap. Rep encodes a family of overlapping, nonstructural, regulatory proteins. In the best-studied AAV prototype strain, AAV2, the mRNAs for Rep78 and Rep68 are transcribed from the AAV p5 promoter (Stutika et al. 2015). Rep78/68 are required for AAV transcription. AAV DNA replication, AAV integration into the host cell genome and its rescue therefrom. Rep52 and Rep40 represent N-terminally truncated versions of Rep78 and Rep68 transcribed from a separate promoter, p19 and are required for encapsidation of the newly synthesized AAV genome into preformed AAV capsids. These are formed by the three cap gene-derived proteins, VP1, VP2, and VP3. The cap ORF also encodes AAP, an assembly-enhancing protein that does not form part of the capsid. The AAV ORFs are flanked by inverted terminal repeat sequences (ITRs) at either end of the genome. These vary in length between AAV serotypes, in AAV2 these comprise around 145 bp, the first 125 bp thereof are capable of forming Y- or T-shaped duplex structures. The ITRs represent the minimal AAV sequences required in cis for DNA replication, packaging, genomic integration and rescue. Only these have to be retained in an AAV vector to ensure DNA replication and packaging of the AAV vector genome. Foreign genes flanked by AAV-ITRs will be replicated and packaged into AAV capsids provided the AAV genes rep and cap are expressed in trans in the chosen packaging cell (Muzyczka, 1992).
AAV are among the few viruses that can persist over months and years in non-dividing cells in vivo, including neurons, muscle, liver, heart and others. Wildtype AAV2 has been shown to integrate its genome into the host cell genome in a Rep78/68-dependent manner, with a preference for chromosomal loci with DNA sequence homology to the so-called Rep-binding site which forms part of the AAV-ITRs (Huser et al., 2014). In contrast, AAV vectors mostly persist as nuclear episomes. Devoid of the AAV genes rep and cap AAV vectors rarely integrate at all, and if so without genomic preference (Huser et al., 2014). Nonetheless long-term AAV persistence has been shown in non-dividing, postmitotic cells.
Generally, a recombinant AAV vector (rAAV) genome will only retain the inverted terminal repeat (ITR) sequence(s) so as to maximize the size of the transgene that can be efficiently packaged by the vector. The structural- and non-structural protein-coding sequences may be provided in trans, e.g., from a vector, such as a plasmid, by stably integrating the respective genes into a packaging cell, or in a recombinant helper virus such as HSV or baculovirus, as reviewed in (Mietzsch, Grasse et al., 2014). Typically, the rAAV vector genome comprises at least one AAV terminal repeat, more typically two AAV terminal repeats, which generally will be at the 5′ and 3′ ends of the heterologous nucleotide sequence(s). The AAV ITR may be from any AAV including serotypes 1-14. Since AAV2-derived ITRs can be cross-packaged into virtually any AAV serotype capsids, AAV2 ITRs combined with AAV2 rep are mostly employed. The AAV terminal repeats need not maintain the wild-type terminal repeat sequence (e.g., a wild-type sequence may be altered by insertion, deletion, truncation or missense mutations), as long as the terminal repeat mediates the desired functions, e.g., replication, virus packaging, integration, and/or provirus rescue, and the like. The rAAV vector genome is generally between 80% to about 105% of the size of the wild-type genome and comprises an appropriate packaging signal as part of the AAV-ITR. To facilitate packaging into an AAV capsid, the entire vector genome is preferably below 5.2 kb, more preferably up to 4.8 kb in size to facilitate packaging of the recombinant genome into the AAV capsid. So-called dimeric or self-complementary AAV vectors (dsAAV) were developed that package double-stranded instead of single-stranded AAV genomes (McCarty et al., 2001). These lead to enhanced AAV gene expression, however at the price of reduced transgene capacity. Only up to 2 kb of foreign genes can be packaged, which is enough for small genes or cDNAs.
Any suitable method known in the art can be used to produce AAV vectors expressing the nucleic acids of this invention. AAV vector stocks can be produced by co-transfection of plasmids for the ITR-flanked AAV vector genome expressing the transgene together with an AAV rep/cap expressing plasmid of the desired serotype and adenovirus-derived helper genes for AAV replication (Grimm et al., 2003; Xiao et al., 1998). AAV vectors can also be produced in packaging cell lines of mammalian or insect origin and/or in combination with recombinant helper viruses, such as adenovirus, herpes simplex virus (HSV), another member of the herpesvirus family, or baculovirus, as reviewed and discussed in (Mietzsch, Grasse et al., 2014).
Another embodiment of the present invention is a method of delivering a nucleic acid to a cell of the, comprising contacting the cell with the delivery vector or recombinant virus particle as described above under conditions sufficient for the DNA sequence to be introduced into the cell. The delivery vectors of the present invention provide a means for delivering nucleic acid sequences into cells of a host to be treated. The delivery vectors may be employed to transfer a nucleotide sequence of interest to a cell in vitro, e.g., to produce a polypeptide in vitro or for ex vivo gene therapy. The vectors are additionally useful in a method of delivering a nucleotide sequence to a subject in need thereof. In this manner, the polypeptide may thus be produced in vivo in the subject. The subject may be in need of the peptide because the production of the polypeptide in the subject may impart some therapeutic effect, as a method of treatment or otherwise.
In one particular embodiment of the method of delivering a nucleic acid to a cell so that the PDGFR-alpha-derived peptide is produced and released from the cell.
In one particular embodiment of the method of delivering a nucleic acid to a cell of host, wherein the method comprises contacting the cell with the recombinant virus particle or liposome as described above under conditions sufficient for the DNA sequence to be introduced into the cell. Conditions sufficient for the DNA sequence to be introduced into the cell comprise the contacting of the AAV capsid to host cell surface receptors and coreceptors. AAV1 capsids bind to 2-3 sialic acid linked to N-acetylgalactosamine, followed by 1-4-linked N-acetylglucosamine, whereas AAV2 capsids bind to heparin sulfate proteoglycan particularly 6-O- and N-sulfated heparins on the cell surface (Mietzsch, Broecker et al., 2014). AAV coreceptors include FGFR-1, Integrin aVb5, hepatocyte growth factor receptor (c-met) and a recently identified, universal AAV receptor, AAVR necessary for transduction with AAV1, AAV2 and others irrespective of the presence of specific glycans (Pillay et al., 2016). AAVR directly binds to AAV particles and helps trafficking to the trans-Golgi network. In any case AAV vectors are expressed in the cell nucleus.
One embodiment of the invention is a delivery vector or recombinant virus particle or liposome as described above for use as medicament.
One embodiment of the invention is a delivery vector or recombinant virus particle or liposome as described above for use the preparation of a medicament.
One embodiment of the invention is a method of treating a diseased subject in need of therapy by administering a delivery vector or recombinant virus particle or liposome as described above.
The delivery of peptides is known in the art as can be derived from standard textbooks such as “Peptide and Protein Delivery”, AP, Chris van der Walle (Ed.). 1st edition 2011.
Subject of the present invention is an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold binding to the HCMV binding region of PDGFR-alpha SEQ ID No. 4.
Subject of the present invention is an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold binding to the HCMV binding region of PDGFR-alpha SEQ ID No. 4 and inhibiting the binding of HCMV to PDGFR-alpha, wherein the inhibition of binding of HCMV to PDGFR-alpha is determined as follows:
Infectious cell free HCMV preparations (corresponding to a multiplicity of infection of 1) are pre-incubated with PDGFR-alpha-Fc chimera in absence or presence of the anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold (at variable concentrations) for 2 h at 37° C. The pre-incubated mixture of HCMV, PDGFR-alpha-Fc chimera and anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is added to human primary fibroblasts at 0° C. Cells are incubated with the mixture for 2 h at 0° C. The mixture of HCMV, PDGFR-alpha-Fc chimera and anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is then removed and replaced with fixation solution (80% acetone) at ambient temperature. After 5 min, acetone is replaced with phosphate buffered solution (PBS) and washed three times with PBS. Bound PDGFR-alpha is detected by immunofluorescence using fluorescence-labeled anti-human-IgG-Fc antibodies. The EC50 is determined as the concentration of the anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold (given in μg/ml) that reduces the relative fluorescence units per HCMV particle by 50% as compared to irrelevant control antibodies and wherein antibodies are regarded effective if the ECs) in the assay described above is lower than 5 μg/ml.
Subject matter of the present invention is also an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to the present invention that is inhibiting HCMV entry.
Subject matter of the present invention is also an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to the present invention for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV.
Subject matter of the present invention is an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to the present invention for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said peptide is administered, and wherein said anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is administered to a pregnant woman who is infected by HCMV, or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV, or a solid organ transplant recipients infected with HCMV.
In one aspect of the invention said anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is monospecific. “Monospecific” means that said antibody or antibody fragment or scaffold binds to one specific region encompassing preferably at least 4, or at least 5 amino acids within the target.
An antibody according to the present invention is a protein including one or more polypeptides substantially encoded by immunoglobulin genes that specifically binds an antigen. The recognized immunoglobulin genes include the kappa, lambda, alpha (IgA), gamma (IgG1, IgG2, IgG3, IgG4), delta (IgD), epsilon (IgE) and mu (IgM) constant region genes, as well as the myriad immunoglobulin variable region genes. Full-length immunoglobulin light chains are generally about 25 Kd or 214 amino acids in length. Full-length immunoglobulin heavy chains are generally about 50 Kd or 446 amino acid in length. Light chains are encoded by a variable region gene at the NH2-terminus (about 110 amino acids in length) and a kappa or lambda constant region gene at the COOH-terminus. Heavy chains are similarly encoded by a variable region gene (about 116 amino acids in length) and one of the other constant region genes.
The basic structural unit of an antibody is generally a tetramer that consists of two identical pairs of immunoglobulin chains, each pair having one light and one heavy chain. In each pair, the light and heavy chain variable regions bind to an antigen, and the constant regions mediate effector functions. Immunoglobulins also exist in a variety of other forms including, for example, Fv, Fab, and (Fab′)2, as well as bifunctional hybrid antibodies and single chains (e.g., Lanzavecchia et al., Eur. J. Immunol. 17:105, 1987; Huston et al., Proc. Natl. Acad. Sci. U.S.A., 85:5879-5883, 1988; Bird et al., Science 242:423-426, 1988; Hood et al., Immunology, Benjamin, N.Y., 2nd ed., 1984; Hunkapiller and Hood, Nature 323:15-16, 1986).
An immunoglobulin light or heavy chain variable region includes a framework region interrupted by three hypervariable regions, also called complementarity determining regions (CDR's) (see, Sequences of Proteins of Immunological Interest, E. Kabat et al., U.S. Department of Health and Human Services, 1983). As noted above, the CDRs are primarily responsible for binding to an epitope of an antigen. An immune complex is an antibody, such as a monoclonal antibody, chimeric antibody, humanized antibody or human antibody, or functional antibody fragment, specifically bound to the antigen.
Chimeric antibodies are antibodies whose light and heavy chain genes have been constructed, typically by genetic engineering, from immunoglobulin variable and constant region genes belonging to different species. For example, the variable segments of the genes from a mouse monoclonal antibody can be joined to human constant segments, such as kappa and gamma 1 or gamma 3. In one example, a therapeutic chimeric antibody is thus a hybrid protein composed of the variable or antigen-binding domain from a mouse antibody and the constant or effector domain from a human antibody, although other mammalian species can be used, or the variable region can be produced by molecular techniques. Methods of making chimeric antibodies are well known in the art, e.g., see U.S. Pat. No. 5,807,715. A “humanized” immunoglobulin is an immunoglobulin including a human framework region and one or more CDRs from a non-human (such as a mouse, rat, or synthetic) immunoglobulin. The non-human immunoglobulin providing the CDRs is termed a “donor” and the human immunoglobulin providing the framework is termed an “acceptor.” In one embodiment, all the CDRs are from the donor immunoglobulin in a humanized immunoglobulin. Constant regions need not be present, but if they are, they must be substantially identical to human immunoglobulin constant regions, i.e., at least about 85-90%, such as about 95% or more identical. Hence, all parts of a humanized immunoglobulin, except possibly the CDRs, are substantially identical to corresponding parts of natural human immunoglobulin sequences. A “humanized antibody” is an antibody comprising a humanized light chain and a humanized heavy chain immunoglobulin. A humanized antibody binds to the same antigen as the donor antibody that provides the CDRs. The acceptor framework of a humanized immunoglobulin or antibody may have a limited number of substitutions by amino acids taken from the donor framework. Humanized or other monoclonal antibodies can have additional conservative amino acid substitutions, which have substantially no effect on antigen binding or other immunoglobulin functions. Exemplary conservative substitutions are those such as
In a preferred embodiment of the invention, the antibody format is selected from the group comprising Fv fragment, scFv fragment, Fab fragment, scFab fragment, (Fab)2 fragment and scFv-Fc-fusion protein. In another preferred embodiment of the invention, the antibody format is selected from the group comprising scFab fragment, Fab fragment, scFv fragment and bioavailability optimized conjugates thereof, such as PEGylated fragments.
Non-Ig scaffolds may be protein scaffolds and may be used as antibody mimics as they are capable to bind to ligands or antigenes. Non-Ig scaffolds may be selected from the group comprising tetranectin-based non-Ig scaffolds (e.g. described in US 2010/0028995), fibronectin scaffolds (e.g. described in EP 1266 025; lipocalin-based scaffolds ((e.g. described in WO 2011/154420); ubiquitin scaffolds (e.g. described in WO 2011/073214), transferring scaffolds (e.g. described in US 2004/0023334), protein A scaffolds (e.g. described in EP 2231860), ankyrin repeat based scaffolds (e.g. described in WO 2010/060748), microproteins, preferably microproteins forming a cystine knot) scaffolds (e.g. described in EP 2314308), Fyn SH3 domain based scaffolds (e.g. described in WO 2011/023685) EGFR-A-domain based scaffolds (e.g. described in WO 2005/040229) and Kunitz domain based scaffolds (e.g. described in EP 1941867).
The anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to the present invention exhibits an affinity towards human PDGFR-alpha in such that affinity constant is greater than 10−7 M, preferred 10−8 M, more preferred affinity is greater than 10−9 M, most preferred higher than 10−10 M. A person skilled in the art knows that it may be considered to compensate lower affinity by applying a higher dose of compounds and this measure would not lead out-of-the-scope of the invention. The affinity constants may be determined according to the method as described previously (40).
Subject of the present invention are also pharmaceutical formulations comprising a soluble PDGFR-alpha-Fc chimera or a PDGFR-alpha derived peptide or an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold.
Subject matter of the present invention encompass also methods for treatment of a subject that has been infected by HCMV or for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein a soluble PDGFR-alpha-Fc chimera or a PDGFR-alpha derived peptide or an anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is administered to a subject in need thereof.
The compounds of the present invention exhibit certain advantages, all of them, in particular peptide and fusion protein and binder (antibody), are effective against various HCMV strains.
The compounds of the present invention, peptide and fusion protein and binder (antibody), can inhibit HCMV infection of various cell types. In a particular embodiment of the invention, a Fc-PDGFRα fusion protein binds to and neutralizes cell-free HCMV particles at an EC50 of 10-50 ng/ml. Treated particles show both reduced attachment to and reduced fusion with cells. In line with this result, Fc-PDGFRα was also effective when applied post-attachment.
The compounds of the present invention are in particular potent inhibitors of HCMV entry into both fibroblasts and endothelial cells. The compounds of the present invention may lead to lesser side effects during treatment in a subject. Further, the risk of developing resistance against treatment is lower when administering the compounds of the present invention in the methods of treatment in accordance of the instant invention. When using the compounds of the present invention, the risk of interference with intracellular pathways is greatly reduced.
The compounds of the present invention are fully active at lower concentrations and are thus promising regarding the ratio of desired and adverse effects. Thus, an antiviral effect can be expected at doses that would not significantly bind and sequester the natural ligand, thus limiting unwanted effects. Thus, the compounds of the present invention can be applied even in pregnant woman.
Considering their therapeutic application, the compounds of the present invention, in particular Fc-PDGFRα and PDGFRα-derived peptides, may offer a number of advantages: (i) they are host-derived and therefore assumed to be non-immunogenic, (ii) an additive effect with the established anti-HCMV drugs can be expected due to the different modes of action; (iii) they are equally effective against infection of fibroblasts and endo-/epithelial cells and (iv) resistance conferring mutations would most likely affect the entry potential of the virus and hence reduce viral fitness.
With the above context, further subject matter of the instant invention can be derived from the consecutively numbered embodiments below:
- 1. Soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the group comprising:
-
- II. a sequence having 90% or more identity to SEQ ID No. 2,
- III. a sequence with at least 45 amino acids that is a truncated sequence of SEQ ID No. 2 or a sequence having 90% or more identity to said truncated SEQ ID No. 2,
- IV. variants of sequences according to items I., II., III. with substitutions at one or more of the following positions (numbering adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
- 2. Soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to embodiment 1, wherein said soluble PDGFR-alpha-Fc chimera inhibits HCMV entry.
- 3. Soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to embodiment 1 or 2, wherein said soluble PDGFR-alpha-Fc chimera has at least one of the following mutations or deletions within SEQ ID No. 2 (numbering adhered to SEQ ID. No. 1):
- i. Deletion of aa 150-189,
- ii. Deletion of an 150-234,
- iii. Deletion of aa 150-290,
- iv. Deletion of aa 150-524,
- v. Deletion of aa 24-100 and deletion of an 150-234.
- vi. SEQ ID No. 2 having at least one point mutation in at least one of the protein regions as specified in the above items i., ii., iii., iv., v.
- 4. Soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to embodiment 3, wherein said soluble PDGFR-alpha-Fc chimera inhibits HCMV entry and shows reduced ability to inhibit the biological activity of PDGF-type growth factors as compared to the inhibitory effect of wild type chimeras as defined in embodiment 1.
- 5. Soluble PDGFR-alpha-Fc chimera for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to any of embodiments 1 to 4, wherein said soluble PDGFR-alpha-Fc chimera is administered to a pregnant woman who is infected by HCMV, or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV, or a solid organ transplant recipients infected with HCMV.
- 6. Soluble PDGFR-alpha-Fc chimera of any of the preceding embodiments, comprising a sequence selected from the group comprising:
- 7. Soluble PDGFR-alpha-Fc chimera of any of the preceding embodiments, further comprising a sequence of human Fc that is SEQ ID No. 8:
- 8. PDGFR-alpha derived peptide for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said peptide is selected from a group comprising SEQ ID No. 9 (between 10 aa and 60 aa in length), or SEQ ID No. 10, or SEQ ID No. 11, or SEQ ID No. 12, or SEQ ID No. 13, or that consists of parts of the following sequence:
- i) SEQ ID No. 9 that is VLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPDPDVAFVPL GMTDYLVIVEDDDSAIIPCRTTDPETPVTLHN,
- ii) SEQ ID No. 10: IKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMK,
- ii) SEQ ID No. 11: GRHIYIYVPDPDVAFVPLGMTDYLVIVEDD,
- iv) SEQ ID No. 12: GRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTT,
- v) SEQ ID No. 13: NVYALKATSELDLEMEALKTVYKSGETIVVTCAVFNNEVV,
- vi) a peptide fragment of SEQ ID No. 9 or SEQ ID No. 10, or SEQ ID No. 11, or SEQ ID No. 12, or SEQ ID No. 13, any of them having at least 10 amino acids, and
- vii) a variant of the above items i). to vi). that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9, or that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 10, or that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 11, or that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 12, or that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 13 or that exhibits at least 80% sequence identity to the peptide fragments of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, or SEQ ID No. 12, or SEQ ID No. 13, any of them having at least 10 amino acids.
- 9. PDGFR-alpha derived peptide for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to embodiment 8, wherein said peptide inhibits HCMV entry.
- 10. Soluble PDGFR-alpha derived peptide for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV according to any of embodiments 8 or 9, wherein said peptide is administered to a pregnant woman that is infected by HCMV or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV or at risk of HCMV infection, or a solid organ transplant recipients infected with HCMV or at risk with HCMV infection.
- 11. Anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold binding to the HCMV binding region of PDGFR-alpha SEQ ID No. 4.
- 12. Anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to embodiment 11, inhibiting the binding of HCMV to PDGFR-alpha, wherein the inhibition of the binding of HCMV to PDGFR-alpha is determined as follows:
- Infectious cell free HCMV preparations (corresponding to a multiplicity of infection of 1) are pre-incubated with PDGFR-alpha-Fc chimera in absence or presence of the anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold (at variable concentrations) for 2 h at 37° C.,
- The pre-incubated mixture of HCMV, PDGFR-alpha-Fc chimera and anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is added to human primary fibroblasts at 0° C.,
- Cells are incubated with the mixture for 2 h at 0° C.
- The mixture of HCMV, PDGFR-alpha-Fc chimera and anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is then removed and replaced with fixation solution (80% acetone) at ambient temperature,
- After 5 min, acetone is replaced with phosphate buffered solution (PBS) and washed three times with PBS,
- Bound PDGFR-alpha is detected by immunofluorescence using fluorescence-labeled anti-human-IgG-Fc antibodies,
- The EC50 is determined as the concentration of the anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold (given in μg/ml) that reduces the relative fluorescence units per HCMV particle by 50% as compared to irrelevant control antibodies, and wherein
- antibodies are regarded effective if the EC50 in the assay described above is lower than 5 μg/ml.
- 13. Anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to embodiment 11 or 12 inhibiting HCMV entry.
- 14. Anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to any of embodiments 11 to 13 for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV.
- 15. Anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold according to any of embodiments 11 to 14 for inhibiting HCMV entry for use in a method of treatment in a subject that has been infected by HCMV or for use in a method of prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, wherein said peptide is administered, and wherein said anti-PDGFR-alpha antibody or a PDGFR-alpha antibody fragment or anti-PDGFR-alpha non-Ig scaffold is administered to a pregnant woman who is infected by HCMV, or a congenitally HCMV-infected child, or a bone marrow transplant recipient infected with HCMV, or a solid organ transplant recipients infected with HCMV.
Cells and Viruses: Primary human foreskin fibroblast (HFFs) were propagated in MEM (plus GlutaMaxx; Gibco) supplemented with 5% fetal calf serum (FCS), 100 μg/ml gentamycin and 0.5 ng/ml basic fibroblast growth factor. During experiments the cells were kept in maintenance medium without growth factor. Conditionally immortalized human endothelial cells (HEC-LTT, short HEC) (25, 28), were proliferated on vessels coated with 0.1% gelatin in endothelial cells growth medium (bullet kit; Lonza) with 2 μg/ml doxycycline. For experiments, the HECs were withdrawn from doxycycline for 24 hours to control the cell numbers of this otherwise fast dividing cell line. The efficiently transfectable hybrid endothelial cell line EA.hy926 (ATCC: CRL-2922; Edgell 1983) was expanded in DMEM (life technologies) plus 10% FCS.
The HCMV strains TB40/E and TB40/F were isolated from the same patient. TB40/E was propagated on endothelial cells and is highly endotheliotropic, whereas TB40/F was kept on fibroblast and is non-endotheliotropic (Sinzger 1999). AD169 (Rowe 1956 Plotkin 1975) and Towne (Plotkin 1975) are widely used HCMV strains, but lack the pentameric complex and are therefore non-endotheliotropic. VR1814 (Revello 2001), VHL/E (Waldman 1991) and Merlin (Davison 2003) represent endotheliotropic HCMV strains. TB40-BACKL7-UL32EGFP-UL100mCherry is an endotheliotropic descendant of TB40/E that was labelled to allow differentiation between enveloped and non-enveloped virus capsids (Sampaio 2013).
TB40-BAC4 is a highly endotheliotropic BACmid based on TB40/E (Sinzger 2008) and BAC4UL74stop is an (yet unpublished) BAC4 mutant in which M7 and K12 of pUL74 were changed to stop codons, resulting in loss of expression of pUL74 (gO). Virus stocks of TB40 variants, AD169, Towne, VHL/E and VR1814 were harvested from infected HFFs day 5 to 7 post infection (p.i.). Supernatants were cleared from cells and large cell debris by centrifugation at 2,700 g for 10 min before storage at −80° C. Cleared UL74stop supernatants were 50 fold concentrated by ultracentrifugation at 70,000 g for 70 min. The luciferase reporter virus contains a Gaussia expression cassette under control of the major immediate early promoter, therefore the luciferase is expressed with the same kinetics as the immediate early proteins of HCMV (10). Virus stocks of the Gaussia luciferase reporter virus were first cleared and then twice ultracentrifuged at 23000 g for 70 min to remove Luciferase that is secreted along with the virus particles.
Example 2Antiviral drugs, chimeric receptor mokcules and PDGFRα-derived peptides: All recombinant Fc-fusion proteins used in these studies were obtained from R&D: PDGFR-alpha-Fc (6765-PR-050), PDGFRβ-Fc (385-PR-100), EGFR-Fc (344-ER-050). The 40 amino acid long peptides based on human PDGFRα isotype 1 extracellular domain were obtained from Phtdpeptides, Shanghai, China. All peptides were dissolved to a final concentration of 1 mmol/A. Depending on their physiochemical properties either water, ammonium carbonate, dimethyl sulfoxide or acetic acid were used as solvents.
Example 3Knockdown of protein expression by siRNA: For reverse transfection of siRNAs, cells were seeded at a density of 10,000 per well. As a negative control the inventors used siGenome non-targeting pool #2 (Dharmacon), as a positive control served a highly efficient IE siRNA (Hochdorfer 2016). Targets were knocked down with pools of four different siRNAs (siGenome Dharmacon). For each transfection using Lipofectamin RNAiMAX (Life Technologies) a final concentration of 50 nM was applied. 48 h post transfection HCMV TB40/E was added to the cells at a multiplicity of 0.5 to 1. Infection was allowed for 1 day before cells were fixed and stained for viral immediate early antigens.
Example 4Inhibition of infection: For testing the inhibitory effect of antivirals or fusion proteins on HCMV, the respective inhibitors were diluted in MEM and mixed with infectious supernatants, the mixtures were incubated for 2 h at 37° C. before addition to the cells. For fibroblast infection the virus-inhibitor mixture was incubated on the cells for about 24 h. If endothelial cells were included in the experiment, all cells were supplied with their respective maintenance media after 2 h, and further incubated for 22 h.
Example 5Determination of infection efficiencies: Infection efficiencies were determined by immunofluorescence staining for viral proteins. For fixation and permeabilization the cells were incubated with 80% acetone for 5 min. For HCMV infected cells the immediate early proteins pUL122/123 were detected with a mouse monoclonal (clone E13, Argene) and visualized using a Cy3 conjugated goat anti-mouse secondary antibody (Jackson Immuno Research). HSV infected cultures were stained 6 h post infection for ICP0 using a mouse monoclonal (clone 11060, Santa Cruz) and goat anti-mouse AF488 (life technologies). DAPI was used to locate nuclei. Infection rates were determined by counting the number of cell nuclei positive for the respective viral protein, as well as the total number of nuclei per image. For each condition three images were evaluated.
For screening the PDGFRα peptides for their neutralizing capacity a recently developed Gaussia-Luciferase-Assay was utilized (10). The Gaussia luciferase is secreted into the cell culture supernatants, therefore it is not necessary to fix the cells and instead a sample of the Gaussia containing supernatant is taken and mixed with the substrate coelenterazine (PjK) at a final concentration of 0.2 μg/ml. The resulting light emission was detected at 495 nm. For all obtained values background signals were subtracted and neutralization efficiency was determined relative to the control samples which contained only virus, no peptide.
Example 6Quantification of adsorption and penetration: To distinguish between adsorption and penetration of viral particles the inventors made use of dual fluorescent HCMV TB40-BACK0.7-UL32EGFP-UL100mCherry (Sampaio 2013). HFFs and HECs were seeded at a density of 40,000 cells per well on gelatin-coated IBIDI plates. Overnight produced cell-free infectious supernatant of the fluorescent virus was pre-incubated with PDGFR-Fcs for 2 h at 37° C. Before addition of the mixture the cells were pre-incubated with MEM for 30 min. Penetration of virus particles which had been pre-incubated for 2 h with 500 ng/ml of Fc-fusion protein, was allowed for 2 h at 37° C. After fixation with acetone, the EGFP signal of pUL32-EGFP was enhanced using mouse-anti-GFP (clone 3E6, Invitrogen) and Alexa488-anti-mouse (Life Technologies). DAPI (4′,6-diamidino-2-phenylindole) was added to mark the cell nuclei. The number of mCherry and EGFP positive particles which are enveloped was compared to the number of particles which were only green per cell. These EGFP-mCherry double positive particles have lost their UL100mCherry containing envelope, presumably by fusion with cellular membranes.
Example 7Analysis of post adsorption inhibitory effects: For the analysis of post adsorption inhibition, HFFs were seeded at a density of 40,000 per well on IBIDI plates and incubated for 1 day before infection. Infectious supernatants of TB40E which were produced within 24 hours were cleared by centrifugation. Two identical plates were treated as follows: Cells and virus dilutions were precooled on ice for 15 min before attachment of the virus was allowed on ice for 1 h. The virus containing medium was exchanged by pre-cooled MEM with or without 200 ng/ml PDGFR-alpha-Fc. After 2 h incubation of the inhibitor with the cells on ice, one plate was directly shifted to 37° C., whereas the other cells were treated with pre-warmed 50% PEG (Roche) for 30 sec. The PEG was washed off by five times washing with pre-warmed PBS. Supplied with pre-warmed MEM containing again 200 ng/ml PDGFR-alpha-Fc, the cells were then incubated at 37° C. After 2 h incubation the medium was exchanged on PEG-treated and untreated cells and infection was allowed to proceed for 24 h before infection efficiencies were assessed by immediate early staining. Efficient PEG fusion was controlled visually by detection of syncytia.
Example 8 Binding of Chimeric Receptors to HCMV Particles:To assess the binding of Fc-Proteins to virus particles, HFFs were seeded at a density of 40,000 cells per well on IBIDI plates 1 day prior to infection. Virus preparations were pre-incubated with Fc-fusion proteins at a final concentration of 500 ng/ml for 2 h at 37° C. The virus/Fc-protein mixtures were incubated with the cells for 1.5 h on ice. Before fixation with 80% acetone, the cells were washed once with MEM. For staining of viral particles mouse hybridoma recognizing the abundant viral protein pp150 (generously provided by W. Britt, Sanchez 2000) used. As a secondary antibody goat anti-mouse Cy3 (Jackson Immuno Research was used. Visualization of bound Fc-proteins was achieved by applying anti-human Alexa488 (Invitrogen). For better orientation, cell nuclei were stained with DAPI. For quantification of PDGFR-alpha-Fc binding to HCMV particles, the grey values of 100 particles per condition were quantified using AxioVision Software (Zeiss).
Example 9 Knockdown of PDGFR-Alpha Prevents HCMV Infection of Fibroblasts but not of Endothelial CellsTwo cellular growth factor receptor molecules, PDGFR-alpha and EGFR have been reported to promote HCMV infection in fibroblasts (33, 39). However, only fibroblast-restricted virus strains lacking the pentameric complex were used in those analyses, and in subsequent studies their relevance for HCMV infection was questioned (21, 35). As we aimed at exploring the potential of these molecules to serve as a basis for the development of HCMV entry inhibitors, the first step was to confirm their contribution to HCMV infection. To address the diverse entry pathways of HCMV the inventors applied a virus strain expressing both gH/gL complexes on two model cell types representing the restricted tropism (fibroblasts) or the extended tropism (endothelial cells).
Using an siRNA approach, the respective growth receptor was knocked down 2 days before infection with HCMV strain TB40/E at an MOI of 1. Cells treated with non-targeting siRNAs served as negative controls while cells in which viral IE RNAs were knocked down served as positive controls. One day after infection, cell cultures were fixed, viral IE antigens were immunostained, and the fraction of IE-antigen-positive cells was determined. In each of three experiments, the relative infection efficiency as compared to the non-targeting control was determined. As expected, knockdown of viral IE RNAs partially reduced the infection efficiency. Knockdown of PDGFR-alpha almost completed prevented HCMV infection of fibroblasts whereas it had no inhibitory effect in endothelial cells (
In line with these results PDGFR-alpha was only found on the surface of fibroblasts but not on endothelial cells in immunofluorescence stainings, and surface expression in fibroblasts was suppressed to levels below the detection limit when they were treated with the respective siRNAs (data not shown).
In conclusion, of the two growth factor receptor molecules that had previously been reported to promote HCMV entry, only the contribution of PDGFR-alpha was confirmed in the present experimental setting.
Example 10Pretreatment of HCMV with a Soluble PDGFR-Fc Chimera Inhibits Infection of Fibroblasts and Endothelial Cells
The strong dependence of HCMV infection on expression of PDGFR-alpha suggested that viral particles interacted physically with this cellular growth factor receptor during the entry process in HFFs. The instant inventors found that pre-treatment of viral particles with soluble forms of this cellular molecule might block the respective interaction sites of the surface of HCMV virions and hence inhibit infection. To test this, the inventors pre-incubated cell free preparations of HCMV strain TB40/E with variable concentrations of soluble PDGFR-alpha-Fc chimeras for 2 h before adding them to HFFs and HECs. After 2 h the virus was removed and replaced with the appropriate cell culture medium for an overnight incubation. Cultures were then fixed, and the fraction of infected cells was determined by indirect immunofluorescence staining of viral IE antigens. Actually, PDGFR-alpha-Fc inhibited infection of HFFs in a dose dependent manner with an EC50 of about 10-20 ng/ml and a complete abrogation of infection at 200 ng/ml (
To address the possibility that the effect is rather due to the Fc part of the chimeric molecule than to the growth receptor part, the inventors compared PDGFR-alpha-Fc with EGFR-Fc and PDGFR-ß-Fc regarding their inhibitory potential on HCMV infection. Cell free preparations of TB40/E were pre-incubated with increasing concentrations of the various Fc chimeras for 2 h. HFFs were then incubated with the mixtures for 2 h followed by a medium exchange and an overnight incubation. Evaluation of the infection rates by immunofluorescence staining of viral IE antigen showed that only PDGFR-alpha-Fc blocked infection in a dose dependent fashion, whereas neither PDGFR-beta-Fc nor EGFR-Fc had an effect (
Next, it was tested whether soluble PDGFR-alpha-Fc would inhibit not only strain TB40/E but also other strains of HCMV. The inventors prepared cell free stocks of five HCMV strains (AD169, Towne, Merlin, VR1814, VHL/E) that represent the envelope glycoprotein variants described for HCMV (32), pre-incubated them with PDGFR-alpha-Fc at a concentration (250 ng/ml) that was sufficient for complete inhibition of strain TB40/E in the previous dose response experiment. In addition. TB40/F was included, a variant of TB40/E that lacks the pentameric gH/gL complex. After pre-incubation of the various HCMV preparations with PDGFR-alpha-Fc for 2 h, the mixture was added to HFFs in a 96-well format for 2 h and then replaced with medium. After an overnight incubation, the fraction of infected cells was determined by immunofluorescence staining of viral immediate early antigen. All strains were strongly inhibited by pretreatment with the soluble receptor, and with the exception of strain VR1814 (residual infection rate <2%) the reduction was complete (
Finally, to test whether this inhibitory effect was specific for HCMV the inventors repeated the experiment and included another herpes virus, HSV-1 strain F. While the inhibitory effect on HCMV was always reproduced, HSV infection was not affected by PFGFR-alpha (data not shown), indicating that the effect is specific for HCMV.
Example 11Inhibition of HCMV Infection by PDGFR-Alpha Occurs at the Level of Viral Entry
The findings that removal of PDGFRα from the cell surface as well as pre-treatment of virus with soluble PDGFRα abrogated infection suggest interference with viral entry as the mode of action. It seemed therefore most likely that PDGFR-alpha-Fc binds directly to HCMV virus particles. The inventors tested this by staining of adsorbed virus particles with the Fc-fusion proteins. HCMV particles were pre-incubated with PDGFR-alpha-Fc, PDGFR-beta-Fc or EGFR-Fc for 90 min at 37° C. before the virus was attached to the cells for 90 min on ice. Virus particles were stained for the capsid protein pp150 and bound Fc-fusion proteins. The anti-human antibody visualized only those particles that were pre-treated with PDGFR-alpha-Fc, indicating that only this growth factor receptor-chimera binds to the virus (
The inventors analyzed the mode of inhibition by PDGFR-alpha-Fc. For this, the binding of different concentrations of the fusion protein was quantified by assessing the particle intensities after staining with anti-human antibody (
To further investigate, which of the initial steps of infection are blocked, the inventors performed a series of experiments that allowed discriminating between adsorption and penetration. They used the dual fluorescent virus TB40-BACKL7-UL32EGFP-UL100mCherry (Sampaio 2013) as it allows to discriminate between enveloped (EGFP-positive and mCherry positive) and non-enveloped particles (only EGFP positive). They compared adsorption and penetration of untreated particles with particles pre-incubated with 100 ng/ml PDGFR-alpha or beta by counting the number of enveloped versus naked particles. On both cell types HFFs and HECs, adsorption of PDGFR-alpha-treated particles was reduced (50% on HFFs and 75% on HECs), whereas penetration was affected only in fibroblasts (
As the inhibition of penetration indicated that virions treated with PDGFR-alpha-Fc are defective for fusion of their envelope with the cellular plasma membrane, the inventors tested whether the chemical fusogen PEG was able to rescue this post-attachment inhibition by PDGFR-alpha-Fc. HCMV virus particles were adsorbed to HFFs for 1 h on ice. The virus containing medium was then exchanged by medium containing PDGFR-alpha-Fc at a concentration of 200 ng/ml. Inhibition of pre-adsorbed virus was allowed for 2 more hours on ice, before the cells were either directly shifted to 37° C. to allow entry or first treated with pre-warmed PEG for 30 sec. The PEG was washed off before the addition of PDGFR-alpha-Fc containing medium. After 2 h of incubation at 37° C. the cells were supplied with fresh medium without inhibitor and further incubated overnight. After 24 h the cells were fixed and stained for the viral immediate early antigens.
PDGFR-alpha-Fc reduced infectivity of already adsorbed viruses to 50% (
As a possible way of inactivation of HCMV, the inventors found that PDGFR-alpha-Fc binds the viral envelope glycoprotein pUL74. It was recently demonstrated that HCMV lacking pUL74 is deficient for fusion into host cells (42). To test whether pUL74 is an interaction partner of PDGFR-alpha-Fc, the inventors tested whether gO deficient particles can be stained with the soluble molecule similarly to wild type particles (shown in
To further investigate this, inhibition assays were performed with the UL74stop virus (
Peptides Derived from the Extracellular Domain of PDGFR-Alpha Inhibit HCMV Infection
The surprising finding that only PDGFR-alpha-Fc but not EGFR-Fc or PDGFR-beta-Fc inhibits HCMV infection had indicated that the inhibitory effect is due to the PDGFR-alpha part of the chimeric molecule, which is actually only the extracellular domain of the native PDGFR-alpha transmembrane molecule. The inventors unexpectedly found that short peptides derived from this protein could also inhibit infection, and therefore tested a set of overlapping 40mer peptides covering the whole sequence of the extracellular PDGFR-alpha domain regarding the inhibitory potential of the individual peptides. Cell free preparations of strain TB40/E were pre-incubated with the individual peptides at concentrations reaching from 0.05-50 nmol/ml for 2 h and the mixtures were then incubated with HFF cultures in a 96-well format. The various peptides differed greatly regarding their inhibitory potential with a region between aa120 and aa280 being absolutely ineffective and the peptides surrounding this region having the highest anti-HCMV effect (
Quantification of the Inhibitory Potential of PDGFR-Alpha-Fc Variants with Small Deletions within the Proposed Ligand Binding Sites on HCMV Infection
Deletion mutant PDGFR-alpha-Fc proteins set forth below and non-deleted PDGFR-alpha-Fc were expressed in 293T cells and purified using protein A. These proteins were initially diluted in cell culture medium to a concentration of 8000 ng/ml and were subsequently further diluted in a row of 2-fold dilutions to a minimum concentration of 4 ng/ml. In the inhibition assays, controls were used that contain the same amount of dilution medium and protein dilution buffer in order to rule out the occurrence of a non-specific inhibition of binding through the respective buffers. Diluted probes containing deletion mutants of PDGFR-alpha-Fc or whole PDGFR-alpha-Fc (without deletions) were mixed at a ratio of 1:1 with HCMV expressing luciferase and subsequently incubated for 2 h at 37° C. These mixtures were subsequently used in infection assays of human fibroblasts. After 2 h incubation of cells with the virus and respectively diluted deletion mutants or non-deleted PDGFR-alpha-Fc as control were removed from the cells and the cells were incubated for additional 24 h in cell culture medium. Thereafter, the activity of the luciferase was determined as a measure of the extent of infection. The background noise measured in the controls with probes containing no deletion mutants of PDGFR-alpha-Fc or without whole PDGFR-alpha-Fc were subtracted from the measurements with deletion mutants of PDGFR-alpha-Fc and whole PDGFR-alpha-Fc, respectively.
Experimental Design:
Cells: HFF at 1.5×104/well seeded the day before on 96-well flat bottom cell culture plates coated freshly with 0.1% gelatin
Virus: BAC4 GLuc (yields 60-70% infection at 1:50 dilution; expresses Gaussia luciferase under control of the HCMV LE promotor)
Soluble Receptor:
Recombinant Human PDGFR alpha Fc Chimera and variants with small deletions within the predicted ligand binding sites. All Proteins were expressed in HEK 293T cells and purified using Protein A sepharose. The proteins were eluted in elution buffer (Thermo) with 10% 1 M Tris pH 8.
Treatment
Pre-Incubation of Virus with the Recombinant Proteins
For each recombinant Protein a 2-fold dilution series starting with 8 μg/ml was prepared. As a negative reference sample control dilution series containing the same volumes of Elution buffer were prepared. PDGFR-alpha-Fc serves as a positive control.
Total volume per dilution: 120 N1
-
- 100 μl of each inhibitor dilution were mixed with 100 N1 of HCMV BAC4Gluc (1:25 diluted)
- =>effective concentration of soluble receptor after addition of virus [ng/ml]:
-
- incubate for 2 h at 37° C.
Infection:
-
- Cell culture medium was replaced with the virus-receptor mixtures
- Cultures were incubated for 2 h at 37° C.
- After 2 h, virus was removed and replaced with medium.
- Cultures were then incubated o/n.
Measurement of Gaussia luciferase:
-
- The Luciferase containing culture media was removed from the cells. A proportion (20 μl) was mixed with Gaussia substrate Coelenterazine and light emission was measured at 492 nm.
- The light emission of samples treated with only buffer was subtracted from the values of the respective samples.
- Cells were fixed with 80% acetone for 5 min at RT to allow for IE staining at a later time point.
- The results of these experiments are shown in
FIG. 10 .
Focus Expansion Assays with the Repaired Strain Merlin (Initial Infection with Supernatant)
The effect of a substance of interest on viral spread is tested by a focus expansion assay essentially as previously described (Sinzger et al., 1997) with the following modifications. Instead of co-culturing infected with uninfected cells, indicator cells are directly infected with cell-free infectious preparations of the repaired strain Merlin (suitable for conditional expression of RL13 and UL128L). HFFs (or other indicator cells of choice), seeded in gelatin-coated 96-well plates at a density of 15,000 cells/well are infected with a virus dose resulting in about 50 infected cells/well, and are subsequently cultured for 7 days in the presence or absence of the substance to be tested. Plates are then fixed with 80% acetone for 5 min at ambient temperature and stained for HCMV immediate-early antigen by indirect immunofluorescence using primary antibody E13 (Argene) and secondary antibody Cy3-goat anti-mouse IgG F(ab′)2 (Jackson ImmunoResearch). Nuclei of all cells are stained with DAPI. The number of infectious foci per well is counted; “infectious foci” being defined as clusters of at least three infected cells. In addition, the number of infected cells of randomly selected infectious foci is counted and “focus size” is given as infected cells/focus. The distribution of values for “focus size” is plotted for each combination of substance with one dot representing one focus, and virus and values of the central tendency (mean or median) are plotted in addition. The results are shown in
Focus Expansion Assays with Clinical Isolates or Stain Merlin (Initial Infection by Coculture):
The effect of a substance of interest on viral spread is tested by a focus expansion assay essentially as previously described (Sinzger et al., 1997). Aliquots of infected cell cultures (HFFs or HFFF-tet cells with about 10% CPE) are thawed, washed with MEM and co-cultured with an 100-fold excess of uninfected indicator cells (e.g. fibroblasts, endothelial cells or epithelial cells) for 7 days in gelatin-coated 96-well plates in the presence or absence of the substance to be tested. Plates are then fixed with 80% acetone for 5 min at ambient temperature and stained for HCMV immediate-early antigen by indirect immunofluorescence using primary antibody E13 (Argene) and secondary antibody Cy3-goat anti-mouse IgG F(ab′)2 (Jackson ImmunoResearch). Nuclei of all cells are stained with DAPI. The number of infectious foci per well is counted; “infectious foci” being defined as clusters of at least three infected cells. In addition, the number of infected cells of randomly selected infectious foci is counted and “focus size” is given as infected cells/focus. The distribution of values for “focus size” is plotted for each combination of substance with one dot representing one focus, and virus and values of the central tendency (mean or median) are plotted in addition.
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Claims
1. A method for treatment of a subject that has been infected by HCMV, comprising: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIRN EENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPD PDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYD SRQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKT VYKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVY TLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQ LEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTDVEKIQEI RYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDD HHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNII TEIHSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRS E,
- administering to said subject a soluble PDGFR-alpha-Fc chimera, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the following group:
- I. SEQ ID No. 2 consisting of amino acides 24 to amino acids 524 of SEQ ID No. 1:
- II. a sequence having 90% or more identity to SEQ ID No. 2,
- III. a sequence that is a truncated sequence of SEQ ID No. 2 with at least 45 amino acids or a sequence having 90% or more identity to said truncated SEQ ID No. 2, and
- IV. variants of sequences according to items I., II., III. having substitutions atone or more of the following positions (numbering adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
2. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera has at least one of the following mutations or deletions within SEQ ID No. 2 (numbering adhered to SEQ ID. No. 1):
- i. Deletion of aa 150-189,
- ii. SEQ ID No. 2 having at least one point mutation in the protein region as specified in the above item i.
3. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera has at least one of the following mutations or deletions within SEQ ID No. 2 (numbering is adhered to SEQ ID No. 1):
- i) Deletion of amino acids M133-I139;
- ii) Deletion of amino acids V184-G185;
- iii) Deletion of amino acids N204-Y206;
- iv) Deletion of amino acids T259-E262;
- v) Deletion of amino acids Q294-E298;
- vi) SEQ ID No. 2 having at least one point mutation in at least one of the protein regions as specified above under items i., ii., iii., iv., or v.
4. The method according to claim 1, wherein said subject is: (a) a pregnant woman who is infected by HCMV, (b) a congenitally HCMV-infected child, (c) a bone marrow transplant recipient infected with HCMV, or (d) a solid organ transplant recipients infected with HCMV.
5. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera comprises a sequence of SEQ ID No. 3.
6. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera comprises a sequence of human Fc as depicted in SEQ ID No. 8.
7. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera is suitable for binding specifically to HCMV.
8. A method for treatment of a subject that has been infected by HCMV comprising:
- administering to said subject a PDGFR-alpha peptide fragment, wherein said peptide fragment is selected from:
- I. SEQ ID No. 9;
- II. SEQ ID No. 10;
- M. SEQ ID No. 11;
- IV. SEQ ID No. 12;
- V. SEQ ID No. 13;
- VI. a peptide fragment of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, or SEQ ID No. 13, any of them having at least 10 amino acids, and
- VII. a variant of the above items I to VI that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13 that exhibits at least 80% sequence identity to the peptide fragment of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13, said variant having a length of at least 10 amino acids.
9. The method according to claim 8, wherein said subject is: (a) a pregnant woman that is infected by HCMV, (b) a congenitally HCMV-infected child, (c) a bone marrow transplant recipient infected with HCMV or at risk of HCMV infection, or (d) a solid organ transplant recipient infected with HCMV or at risk with HCMV infection.
10. (canceled)
11. (canceled)
12. (canceled)
13. (canceled)
14. (canceled)
15. A method for prophylaxis of HCMV infection in a subject that has not yet been infected by HCMV, comprising: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIR NEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYV PDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPA SYDSRQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEME ALKTVYKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPS IKLVYTLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEI KPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTD VEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPS SILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTI LANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRE LKLVAPTLRSE,
- administering to said subject a soluble PDGFR-alpha-Fc chimera, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the following group:
- I. SEQ ID No. 2 consisting of amino acids 24 to amino acids 524 of SEQ ID No. 1:
- II. a sequence having 90% or more identity to SEQ ID No. 2,
- III. a sequence that is a truncated sequence of SEQ ID No. 2 with at least 45 amino acids or a sequence having 90% or more identity to said truncated SEQ ID No. 2, and
- IV. variants of sequences according to items I., II., III. having substitutions atone or more of the following positions (numbering adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
16. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera, has an EC50 value lower than 100 ng/ml.
17. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence having at least one of the following mutations or deletions within SEQ ID No. 2 (numbering is adhered to SEQ ID No. 1):
- i. Deletion of amino acids M133-I139 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids; further it is possible also to delete one or two or three or four or five amino acids less than amino acids M133-I139 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids M133-I139,
- ii. Deletion of amino acids V184-G185 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions; Furthermore, it is possible also to delete one amino acid less than amino acids V184-G185 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids V184-G185,
- iii. Deletion of amino acids N204-Y206 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids; furthermore, it is possible also to delete one or two amino acid less than amino acids N204-Y206 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids N204-Y206;
- iv. Deletion of amino acids N240-L245 (optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids; further it is possible also to delete one or two or three or four or five amino acids less than amino acids N240-L245 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids N240-L245,
- v. Deletion of amino acids T259-E262 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions; further it is possible also to delete one or two or three or four amino acids less than amino acids T259-E262 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids T259-E262;
- vi. Deletion of amino acids K270-T273 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids, wherein each of the respective combinations of additional deletions; further it is possible also to delete one or two or three amino acids less than amino acids K270-T273 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids K270-T273;
- vii. Deletion of amino acids Q294-E298 optionally having additional deletions at the N- and/or C-termini of at least one or at least two or at least three N-terminal amino acids and/or at least one or at least two or at least three or at least four or at least five C-terminal amino acids; further it is possible also to delete one or two or three or four amino acids less than amino acids Q294-E298 at the N-terminus and/or the C-terminus, wherein all possible combinations of fewer deleted amino acids are possible, provided that at least one amino acid remains deleted in the stretch of amino acids Q294-E298; and
- viii. SEQ ID No. 2 having at least one point mutation in at least one of the protein regions as specified above under items i., ii., iii., iv., v., vi, or vii.
18. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the following group:
- I. a sequence having 90% or more identity to SEQ ID No. 2,
- II. a sequence that is a truncated sequence of SEQ ID No. 2 or a sequence having 90% or more identity to said truncated SEQ ID No. 2 said sequence having at least 45 amino acids, and
- III. variants of sequences according to the yet aforementioned items I. and II., with substitutions at one or more of the following positions (numbering is adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Lu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
19. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera comprises a sequence selected from the following group: SEQ ID No. 3: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIR NEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYV PDPDVAFVPLGMTDYLVIVEDDDSAIIPEATVKGKKFQTIPFNVYALKA TSELDLEMEALKTVYKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGIT MLEEIKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMKKVTIS VHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLI ENLTEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYT FELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKK CNNETSWTILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVRCLAK NLLGAENRELKLVAPTLRSE, SEQ ID No. 4: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIR NEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYV PDPDVAFVPLGMTDYLVIVEDDDSAIIPCAVFNNEVVDLQWTYPGEVKG KGITMLEEIKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMKK VTISVHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNN LTLIENLTEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAV KSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICK DIKKCNNETSWTILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVR CLAKNLLGAENRELKLVAPTLRSE, SEQ ID No. 5: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIR NEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYV PDPDVAFVPLGMTDYLVIVEDDDSAIIPAARQATREVKEMKKVTISVHE KGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENL TEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFEL LTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNN ETSWTILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVRCLAKNLL GAENRELKLVAPTLRSE, SEQ ID No. 6: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIR NEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYV PDPDVAFVPLGMTDYLVIVEDDDSAIIP, SEQ ID No. 7: YYNHTQTEENELEGRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIP.
20. The method according to claim 1, wherein said soluble PDGFR-alpha-Fc chimera further comprises the sequence of human Fc that is SEQ ID No. 8: LTVAGSDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV DVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL NGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVS LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDK SRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK.
21. A method for inhibiting HCMV entry into a cell, comprising: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIRNE ENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPDP DVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYDS RQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTV YKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYT LTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQL EAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTDVEKIQEIRY RSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDDHH GSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEI HSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSE,
- bringing said cell into contact with a soluble PDGFR-alpha-Fc chimera, wherein said soluble PDGFR-alpha-Fc chimera comprises a PDGFR-alpha sequence selected from the following group: I. SEQ ID No. 2 consisting of amino acids 24 to amino acids 524 of SEQ ID No. 1:
- II. a sequence having 90% or more identity to SEQ ID No. 2, III. a sequence that is a truncated sequence of SEQ ID No. 2 with at least 45 amino acids or a sequence having 90% or more identity to said truncated SEQ ID No. 2, and IV. variants of sequences according to items I., II., III. having substitutions atone or more of the following positions (numbering adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
22. A method for inhibiting HCMV entry into a cell, comprising:
- bringing said cell into contact with a PDGFR-alpha peptide fragment, wherein said peptide fragment is selected from:
- I. SEQ ID No. 9;
- II. SEQ ID No. 10;
- III. SEQ ID No. 11;
- IV. SEQ ID No. 12;
- V. SEQ ID No. 13,
- VI. a peptide fragment of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, or SEQ ID No. 13, any of them having at least 10 amino acids, and
- VII. a variant of the above items I to VI that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13 that exhibits at least 80% sequence identity to the peptide fragment of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13, said variant having a length of at least 10 amino acids.
23. A method for inhibiting HCMV entry into a cell, comprising:
- bringing said cell into contact with a delivery vector for transferring a nucleic acid sequence encoding a PDGFR-alpha derived peptide or fragment thereof suitable for inhibiting HCMV entry, wherein the peptide or fragment is releasable from the delivery vector to bind to HCMV and inhibit infection of said cell.
24. The method according to claim 23, wherein said nucleic acid sequence comprises a PDGFR-alpha sequence selected from the following group: QLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIRNE ENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPDP DVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYDS RQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTV YKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYT LTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQL EAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTDVEKIQEIRY RSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDDHH GSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEI HSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSE,
- I. SEQ ID No. 2 consisting of amino acids 24 to amino acids 524 of SEQ ID No. 1:
- II. a sequence having 90% or more identity to SEQ ID No. 2,
- III. a sequence that is a truncated sequence of SEQ ID No. 2 with at least 45 amino acids or a sequence having 90% or more identity to said truncated SEQ ID No. 2, and
- IV. variants of sequences according to items I., II., III. having substitutions atone or more of the following positions (numbering adhered to SEQ ID. No. 1): Ile-30, Glu-52, Ser-66, Ser-67, Asp-68, Leu-80, Ser-89, His-162, Pro-169, Asp-173, Ile-188, Val-193, Lys-194, Glu-213, Lys-304, Thr-320, His-334, Arg-340, Ile-373, Lys-378, Ala-396, Ala-401, Thr-436, Thr-440, Ile-453, Val-469, Ile-476, Ser-478, Asp-480, Ser-482, Arg-487.
25. The method according to claim 23, wherein said nucleic acid sequence comprises a PDGFR-alpha sequence selected from the following group:
- I. SEQ ID No. 9;
- II. SEQ ID No. 10;
- III. SEQ ID No. 11;
- IV. SEQ ID No. 12;
- V. SEQ ID No. 13,
- VI. a peptide fragment of SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, or SEQ ID No. 13, any of them having at least 10 amino acids, and
- VII. a variant of the above items I to VI that exhibits at least 80% sequence identity to the peptide having the sequence of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13 that exhibits at least 80% sequence identity to the peptide fragment of SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11 or SEQ ID No. 12 or SEQ ID No. 13, said variant having a length of at least 10 amino acids.
Type: Application
Filed: Aug 6, 2021
Publication Date: Dec 9, 2021
Applicant: AiCuris Anti-Infective Cures GmbH (Wuppertal)
Inventors: Christian SINZGER (Reutlingen), Cora STEGMANN (Ulm), Kerstin LAIB SAMPAIO (Dettingen), Barbara ADLER (Munich)
Application Number: 17/395,676
