Patents by Inventor Amitabh Shukla

Amitabh Shukla has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20090089329
    Abstract: Systems and methods for using the same for dynamically generating repeat libraries for use in detecting and for masking out repetitive elements in species having poorly characterized genomes or transcriptomes based on phylogenetic analysis are provided herein. Dynamically generated repeat libraries find use, for example, in the design and use of probes for identification of specific targets in these poorly characterized species.
    Type: Application
    Filed: September 28, 2007
    Publication date: April 2, 2009
    Inventors: Charles F. Nelson, III, Jing Gao, Amitabh Shukla
  • Publication number: 20080228409
    Abstract: Systems and methods for using the same to select or design probes specific for a target nucleic acid based on experimental parameters are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: May 30, 2008
    Publication date: September 18, 2008
    Inventors: Charles F. Nelson, Jing Gao, Amitabh Shukla
  • Publication number: 20080040047
    Abstract: Systems and methods for using the same to design target probes sets are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: July 28, 2006
    Publication date: February 14, 2008
    Inventors: Charles F. Nelson, Jing Gao, Amitabh Shukla
  • Publication number: 20080027653
    Abstract: Systems and methods for using the same to qualify biomolecular probes for use in a predetermined hybridization assay are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: July 28, 2006
    Publication date: January 31, 2008
    Inventors: Charles F. Nelson, Jing Gao, Amitabh Shukla
  • Publication number: 20080027655
    Abstract: Systems and methods for using the same to select probes specific for a target nucleic acid are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: July 28, 2006
    Publication date: January 31, 2008
    Inventors: Charles F. Nelson, Jing Gao, Peter Webb, Amitabh Shukla
  • Publication number: 20080027654
    Abstract: Systems and methods for using the same to design biomolecular probes specific for a target nucleic acid are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: July 28, 2006
    Publication date: January 31, 2008
    Inventors: Charles F. Nelson, Jing Gao, Amitabh Shukla
  • Publication number: 20080021660
    Abstract: A computer-implemented method for viewing comparative genomic hybridization (CGH) data is provided. In certain embodiments, the method comprises: a) inputting a plurality of CGH data sets for a corresponding plurality of genomic samples into a computer memory; b) analyzing the CGH data sets using an aberration calling method to identify chromosomal regions having aberrant copy number; and c) producing a graphical user interface that shows graphical representations of a chromosomes from each of the genomic samples.
    Type: Application
    Filed: July 24, 2006
    Publication date: January 24, 2008
    Inventors: Amitabh Shukla, Amir Ben-dor, Jayati Ghosh
  • Publication number: 20080005142
    Abstract: Systems and methods for using the same to exchange array content information are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: June 29, 2006
    Publication date: January 3, 2008
    Inventors: Charles F. Nelson, Amitabh Shukla
  • Publication number: 20080005083
    Abstract: Systems and methods for using the same to exchange proprietary array content information are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: June 29, 2006
    Publication date: January 3, 2008
    Inventors: Charles F. Nelson, Amitabh Shukla
  • Publication number: 20070244649
    Abstract: A method and device for supplying array data processing inputs, such as design files and protocols, for analyzing a microarray are disclosed herein. The user is able to access from a client computer, without the user specifying the network location, a storage unit at a predetermined network location, and receive into the computer from the storage unit through the network connection the array data processing inputs.
    Type: Application
    Filed: April 18, 2006
    Publication date: October 18, 2007
    Inventors: Scott Medberry, Xiangyang Zhou, Amitabh Shukla
  • Publication number: 20070148658
    Abstract: Systems and methods for using the same to obtairi one or more probe sequences in response to an input graphical representation of a biopolymeric sequence are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: February 6, 2006
    Publication date: June 28, 2007
    Inventors: Charles F. Nelson, Amitabh Shukla
  • Publication number: 20070143029
    Abstract: Systems and methods for using the same to obtain a chemical array layout are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: February 6, 2006
    Publication date: June 21, 2007
    Inventors: Charles Nelson, Amitabh Shukla, Jing Gao
  • Publication number: 20060115822
    Abstract: Systems and methods for using the same to obtain one or more probe sequences, e.g., for use on an array, are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: November 30, 2004
    Publication date: June 1, 2006
    Inventors: Peter Webb, Charles Nelson, Amitabh Shukla, Marylinn Munson
  • Publication number: 20060116827
    Abstract: Systems and methods for using the same to obtain a chemical array layout are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: November 30, 2004
    Publication date: June 1, 2006
    Inventors: Peter Webb, Charles Nelson, Amitabh Shukla, Marylinn Munson
  • Publication number: 20060116825
    Abstract: Systems and methods for using the same to obtain a chemical array layout are provided. Also provided are computer program products for executing the subject methods.
    Type: Application
    Filed: November 30, 2004
    Publication date: June 1, 2006
    Inventors: Peter Webb, Charles Nelson, Amitabh Shukla, Marylinn Munson
  • Publication number: 20030229529
    Abstract: The present invention provides a solution to the needs described above through a method for identifying one or more persons from a plurality of persons to utilize in achieving a goal. The method comprises establishing competency records, person records, and building desired goal profile records. Competencies identified in person records are compared to required competencies identified in goal profile records to identify best fit persons to utilize in achieving a goal.
    Type: Application
    Filed: February 23, 2001
    Publication date: December 11, 2003
    Inventors: Yet Mui, Mark Bennett, John Martin, Amitabh Shukla, Patrick Lardin
  • Patent number: 5732271
    Abstract: A method and system which provides a prototypical object which can be copied to create a derived object. A derived object can contain attribute values or it can hold a reference to its prototypical object. If a required value is not held by the prototypical object, the present invention discloses a scheme by which the object searches up an object hierarchy to find the required attribute. In addition, each object can register an interest in a prototypical object that contains required attributes. If an attribute of a prototypical object changes, the prototypical object informs all registered objects of the change. At runtime, the prototypical object becomes a master object whose attribute values can be changed by the user, changes in master object attributes are propagated to all registered derived objects.
    Type: Grant
    Filed: January 23, 1995
    Date of Patent: March 24, 1998
    Assignee: International Business Machines Corporation
    Inventors: Richard Edmond Berry, Amitabh Shukla