Patents by Inventor Daniel Roitman

Daniel Roitman has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20080095488
    Abstract: Substrates, including zero mode waveguide substrates that have been fabricated to provide additional functional elements and/or components including increased volumes for positioning of active surfaces and/or components for the mitigation of negative electrochemical properties of the underlying substrates.
    Type: Application
    Filed: June 11, 2007
    Publication date: April 24, 2008
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Mathieu Foquet, Paul Peluso, Stephen Turner, Daniel Roitman, Geoffrey Otto
  • Publication number: 20080032301
    Abstract: Methods of producing substrates having selected active chemical regions by employing elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate. The methods may include optical, chemical and/or mechanical processes for the deposition, removal, activation and/or deactivation of chemical groups in selected regions of the substrate to provide selective active regions of the substrate.
    Type: Application
    Filed: March 29, 2007
    Publication date: February 7, 2008
    Applicant: PACIFIC BIOSCIENCES OF CALIFORNIA, INC.
    Inventors: David Rank, Jeffery Wegener, Jonas Korlach, Daniel Roitman, Yue Xu, John Lyle, Stephen Turner, Paul Peluso, Geoff Otto
  • Publication number: 20080003622
    Abstract: Methods for detecting the presence of an analyte in a sample are provided. Aspects of the methods include mixing a sample with an indirectly-detectable labeled binding member that includes a label moiety. The mixing produces a first composition. Unbound labeled binding member is then separated from any resultant binding complexes to produce a second composition that includes the binding complexes. A second light emitted by a light wavelength converter that is excited by a first light generated by the labeled binding member of the binding complexes of the second composition is then detected to detect the presence of the analyte in the sample. Embodiments also include kits and systems that find use in practicing the subject methods.
    Type: Application
    Filed: April 12, 2007
    Publication date: January 3, 2008
    Inventor: Daniel Roitman
  • Publication number: 20080003621
    Abstract: Methods for detecting the presence of an analyte in a sample are provided. Aspects of the methods include mixing a sample with an indirectly-detectable labeled binding member that includes a label moiety. The mixing produces a first composition. Unbound labeled binding member is then separated from any resultant binding complexes to produce a second composition that includes the binding complexes. A second light emitted by a light wavelength converter that is excited by a first light generated by the labeled binding member of the binding complexes of the second composition is then detected to detect the presence of the analyte in the sample. Embodiments also include kits and systems that find use in practicing the subject methods.
    Type: Application
    Filed: April 12, 2007
    Publication date: January 3, 2008
    Inventor: Daniel Roitman
  • Publication number: 20070238679
    Abstract: Methods of producing substrates having selected active chemical regions by employing elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate. The methods may include optical, chemical and/or mechanical processes for the deposition, removal, activation and/or deactivation of chemical groups in selected regions of the substrate to provide selective active regions of the substrate.
    Type: Application
    Filed: March 30, 2006
    Publication date: October 11, 2007
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: David Rank, Jonas Korlach, Yue Xu, Stephen Turner, Jeffrey Wegener, Daniel Roitman, John Lyle
  • Publication number: 20070231922
    Abstract: In one aspect, an assay test strip includes a test label that specifically binds a target analyte and a control label that is free of any specific binding affinity for the target analyte and has a different optical characteristic than the test label. In another aspect, an assay test strip includes a test label that specifically binds a target analyte and at least one non-specific-binding label that is free of any specific binding affinity for the target analyte. Systems and methods of reading assay test strips also are described.
    Type: Application
    Filed: September 26, 2005
    Publication date: October 4, 2007
    Inventors: Patrick Petruno, John Petrilla, Michael Brosnan, Rong Zhou, Daniel Roitman
  • Publication number: 20070134815
    Abstract: The present invention is directed to a substrate for use in detection of an analyte where the substrate includes an engineered surface having nanostructures and the analyte is labeled with nanoparticles. The substrate also includes at least one molecule having binding affinity for the nano-particle labeled analyte; wherein association of at least one nano-particle labeled analyte to at least one molecule on the engineered substrate causes a detectable change in resonant wavelength or intensity. The present invention also includes a kit comprising the above substrate and methods for use thereof.
    Type: Application
    Filed: July 11, 2005
    Publication date: June 14, 2007
    Inventors: Danielle Chamberlin, Daniel Roitman
  • Publication number: 20070116595
    Abstract: In one aspect, a diagnostic test system includes a receptacle, optical detectors, and a logic circuit. Each of the optical detectors has a corresponding view in the receptacle and produces an electrical signal at a respective detector output in response to light from the corresponding view. The logic circuit includes logic inputs that are respectively coupled to the detector outputs and that produce an output logic signal corresponding to a logical combination of signals received at the logic inputs. In another aspect, respective detection signals are produced in response to light received from respective ones of multiple views of the test strip, and at least one output logic signal corresponding to a respective logical combination of the detection signals is generated.
    Type: Application
    Filed: November 22, 2005
    Publication date: May 24, 2007
    Inventors: John Petrilla, Daniel Roitman
  • Publication number: 20070110671
    Abstract: The present invention relates to a substrate including a nanoparticle lattice having uniform interparticle spacing. A system includes a nanoparticle lattice including a ordered pattern of individual nanoparticles, wherein the lattice nanoparticles are assembled by affinity binding.
    Type: Application
    Filed: November 14, 2005
    Publication date: May 17, 2007
    Inventors: Danielle Chamberlin, Daniel Roitman, Jennifer Lu
  • Publication number: 20070099180
    Abstract: The invention in particular embodiments provides an evanescent wave sensor which includes a ligand bound to a sensor substrate via a ?-hydroxy-linker moiety, as defined herein. Methods of making the subject evanescent wave sensors are also provided which include contacting a first reactive moiety which has an epoxy-ring moiety with a second reactive moiety which has an amino moiety or a thiol moiety, as further described herein. Also provided by the invention are methods in which a subject evanescent wave sensor is contacted with a sample, and binding of analytes in the sample to the sensor is assessed by evanescent wave detection. The invention also provides kits and systems for performing the subject methods.
    Type: Application
    Filed: October 31, 2005
    Publication date: May 3, 2007
    Inventors: Karla Robotti, Daniel Roitman
  • Publication number: 20070077564
    Abstract: Reactive surfaces, substrates and methods of producing and using such substrates and surfaces are provided. The substrates and surfaces provide low density reactive groups preferably on an otherwise non-reactive surface for use in different applications including single molecule analyses.
    Type: Application
    Filed: September 30, 2005
    Publication date: April 5, 2007
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Daniel Roitman, Paul Peluso, Mathieu Foquet
  • Publication number: 20070052049
    Abstract: An integrated opto-electric sensor includes a wavenumber matching structure that is integrated onto a silicon substrate, and a first conductive electrode that is adjacent to one of a lightly doped and an undoped region in the silicon substrate to form a Schottky junction. A dielectric is positioned adjacent to the first conductive electrode, and a second conductive electrode is formed at the silicon substrate. The first conductive electrode and the second conductive electrode provide coupling for a detected signal that is provided in response to illumination of the wavenumber matching structure by an optical signal.
    Type: Application
    Filed: September 7, 2005
    Publication date: March 8, 2007
    Inventors: Sandeep Bahl, Daniel Roitman
  • Patent number: 7173240
    Abstract: An electrospray device for a mass spectrometry system is described. The electrospray device comprises a body portion and a tip portion extending from the body portion. The tip portion comprises a polymeric material. The electrospray device also comprises a hydrophobic coating substantially selectively covering the tip portion.
    Type: Grant
    Filed: November 30, 2004
    Date of Patent: February 6, 2007
    Assignee: Agilent Technologies, Inc.
    Inventors: Karen L. Seaward, Hongfeng Yin, Kevin P. Killeen, Daniel Sobek, Daniel Roitman
  • Publication number: 20060269453
    Abstract: A droplet sample holder, especially a sample holder for use in a measuring instrument utilizing surface plasmon resonance. The sample holder reduces or minimizes the measurement distortion result of the droplet “pherpheral concentration effect” by surrounding the analysis zone with a wettable (hydrophilic) zone that captures the periphery of the droplet to keep the pheriphery of the droplet and the increased concentration of the analyte out of the analysis zone. The wettable zone is surrounded by a nonwettable (hydrophobic) zone that restricts the periphery of the droplet to analysis zone and the wettable zone.
    Type: Application
    Filed: May 31, 2005
    Publication date: November 30, 2006
    Inventors: Daniel Roitman, Gregory VanWiggeren
  • Publication number: 20060269930
    Abstract: The invention in particular embodiments provides an evanescent wave sensor which includes a ligand bound to a sensor substrate via a NCYX linker moiety, as defined herein. Methods of making the subject evanescent wave sensors are also provided which include contacting a first reactive moiety which has an isocyanato (or isothiocyanato) moiety with a second reactive moiety which has an hydroxyl, thiol, or amino moiety, as further described herein. Also provided by the invention are methods in which a subject evanescent wave sensor is contacted with a sample, and binding of analytes in the sample to the sensor is assessed by evanescent wave detection. The invention also provides kits and systems for performing the subject methods.
    Type: Application
    Filed: May 31, 2005
    Publication date: November 30, 2006
    Inventors: Karla Robotti, Daniel Roitman
  • Publication number: 20060240568
    Abstract: An assay test strip includes a flow path, a sample receiving zone, a label, a detection zone that includes a region of interest, and at least one position marker. The at least one position marker is aligned with respect to the region of interest such that location of the at least one position marker indicates a position of the region of interest. A diagnostic test system includes a reader that obtains light intensity measurement from exposed regions of the test strip, and a data analyzer that performs at least one of (a) identifying ones of the light intensity measurements obtained from the test region based on at least one measurement obtained from the at least one reference feature, and (b) generating a control signal modifying at least one operational parameter of the reader based on at least one measurement obtained from the at least one reference feature.
    Type: Application
    Filed: November 16, 2005
    Publication date: October 26, 2006
    Inventors: Patrick Petruno, John Petrilla, Michael Brosnan, Rong Zhou, Daniel Roitman, Bo Curry
  • Publication number: 20060240541
    Abstract: In one aspect, a diagnostic test system includes a housing, a reader, and a data analyzer. The housing includes a port for receiving a test strip. The reader obtains separable light intensity measurements from localized regions of an area of the detection zone exposed for optical inspection, wherein each of the localized regions is characterized by at least one surface dimension smaller than the first dimension. The data analyzer identifies ones of the light intensity measurements obtained from the at least one test region and computes at least one parameter from the identified ones of the light intensity measurements. In another aspect, the reader obtains a respective set of light intensity measurements from each of multiple corresponding regions of the exposed surface area of the detection zone, and the data analyzer computes at least one parameter from at least one of the sets of light intensity measurements.
    Type: Application
    Filed: April 22, 2005
    Publication date: October 26, 2006
    Inventors: Patrick Petruno, John Petrilla, Michael Brosnan, Rong Zhou, Daniel Roitman
  • Publication number: 20060231494
    Abstract: A packing material for a chromatography column is described. The packing material comprises a support structure. The packing material also comprises a stationary phase adjacent to the support structure and comprising a carbon nanotube material.
    Type: Application
    Filed: April 15, 2005
    Publication date: October 19, 2006
    Inventors: Jennifer Lu, Dan-Hui Yang, Hongfeng Yin, Daniel Roitman
  • Publication number: 20060230818
    Abstract: Planar resonant tunneling sensor devices and methods for using the same are provided. The subject devices include first and second electrodes present on a surface of a planar substrate and separated from each other by a nanodimensioned gap. The devices also include a first member for holding a sample, and a second member for moving the first member and planar resonant tunneling electrode relative to each other. Also provided are methods of fabricating such a device and methods of using such a device for improved detection and characterization of a sample.
    Type: Application
    Filed: April 14, 2005
    Publication date: October 19, 2006
    Inventors: Phillip Barth, Derek Stein, Curt Flory, Rick Pittaro, Daniel Roitman
  • Publication number: 20060227328
    Abstract: Light-sensing systems and methods thereof are described. A light source illuminates target areas arrayed on a surface. Light guides receive light reflected from the target areas. The amount of light reflected from a target area corresponds at least in part to the composition of a substance associated with that target area. Detectors receive reflected light carried by the light guides.
    Type: Application
    Filed: April 8, 2005
    Publication date: October 12, 2006
    Inventors: Gregory Vanwiggeren, Rene Helbing, Daniel Roitman