Patents by Inventor Dapeng Sun

Dapeng Sun has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20210171925
    Abstract: Proteases are enzymes which hydrolyze protein enzymes, eliminating their activity. The present invention exploits the hydrolyzing activity of proteases including proteinase K, endoproteinase LysC and/or trypsin to control the activity of restriction enzymes and/or eliminate or reduce production of unwanted DNA or RNA fragments (known as star activity).
    Type: Application
    Filed: February 9, 2021
    Publication date: June 10, 2021
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby, Michaela Shottes
  • Patent number: 11001818
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Grant
    Filed: March 15, 2019
    Date of Patent: May 11, 2021
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Publication number: 20210087550
    Abstract: Disclosed is a product and process, wherein one adds a N-terminal Histamine-Maltose Binding Protein (“MBP”) tag to endonucleases, including restriction endonucleases like Hind III, and binds the tagged fusion protein to a solid support, preferably beads, once the enzyme has digested oligonucleotides in solution, in order to arrest further digestion. Preferred beads for binding the tagged enzyme are magnetic beads, which can easily be removed from solution by binding to a support and then removing it, or can be accumulated by magnetic attraction in a particular region. More preferred are magnetic beads bound to iminodiacetic acid or nitrilotriacetic acid.
    Type: Application
    Filed: September 22, 2020
    Publication date: March 25, 2021
    Inventors: Zhenyu Zhu, Dapeng Sun, Michaela Shottes
  • Publication number: 20210079365
    Abstract: The invention includes a mutant Taq polymerase, which can significantly extend and amplify a target sequence where the extension conditions are time limited to as little as one second. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: November 30, 2020
    Publication date: March 18, 2021
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Patent number: 10947518
    Abstract: Proteases are enzymes which hydrolyze protein enzymes, eliminating their activity. The present invention exploits the hydrolyzing activity of proteases including proteinase K, endoproteinase LysC and/or trypsin to control the activity of restriction enzymes and/or eliminate or reduce production of unwanted DNA or RNA fragments (known as star activity).
    Type: Grant
    Filed: October 2, 2020
    Date of Patent: March 16, 2021
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby, Michaela Shottes
  • Patent number: 10920202
    Abstract: Disclosed is an engineered thermolabile mutant of Serratia Marcescens Nuclease. In the same buffer as used for optimal enzyme activity, after 60° C. for 20 min, while the wild type retained 12.5% activity, the thermolabile mutant R146D/D156R/D229R/D245R (SEQ ID NO: 12, without the first 21 amino acids, which are a signal peptide) retained only 0.39% activity. Heat inactivation of the mutant, when it is used for protein purification, can be used after a period when substantial DNA in a protein has been degraded, but before unwanted degradation takes place.
    Type: Grant
    Filed: August 20, 2020
    Date of Patent: February 16, 2021
    Assignee: AbClonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Michaela Shottes
  • Patent number: 10865441
    Abstract: The invention includes a mutant Taq polymerase, which can significantly extend and amplify a target sequence where the extension conditions are time limited to as little as one second. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Grant
    Filed: March 9, 2020
    Date of Patent: December 15, 2020
    Assignee: AbClonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Publication number: 20200362320
    Abstract: The invention includes a mutant Taq polymerase or biologically active fragment thereof, which can significantly extend and amplify a target sequence in comparison to wild type Taq polymerase, where the extension mixture includes asymmetrical cyanine dye, including SYBR Green I. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: May 11, 2020
    Publication date: November 19, 2020
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Publication number: 20200291455
    Abstract: The invention includes a mutant Taq polymerase, which can significantly extend and amplify a target sequence where the extension conditions are time limited to as little as one second. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: March 9, 2020
    Publication date: September 17, 2020
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Publication number: 20200283825
    Abstract: The invention includes a mutant Taq polymerase, which can effectively amplify a target sequence under conditions of salt concentration(s) similar to body fluids, including blood, serum or plasma preserved with sodium citrate. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: March 9, 2020
    Publication date: September 10, 2020
    Inventors: Zhenyu Zhu, Dapeng Sun, Weiling Peng
  • Publication number: 20200063121
    Abstract: Compositions and methods are provided for enzymes with altered properties that involve a systematic approach to mutagenesis and a screening assay that permits selection of the desired proteins. Embodiments of the method are particularly suited for modifying specific properties of restriction endonucleases such as star activity. The compositions includes restriction endonucleases with reduced star activity as defined by an overall fidelity index improvement factor.
    Type: Application
    Filed: September 11, 2019
    Publication date: February 27, 2020
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shuang-Yong Xu, Shengxi Guan, Hua Wei, Penghua Zhang, Dapeng Sun, Siu-hong Chan
  • Patent number: 10450559
    Abstract: Compositions and methods are provided for enzymes with altered properties that involve a systematic approach to mutagenesis and a screening assay that permits selection of the desired proteins. Embodiments of the method are particularly suited for modifying specific properties of restriction endonucleases such as star activity. The compositions includes restriction endonucleases with reduced star activity as defined by an overall fidelity index improvement factor.
    Type: Grant
    Filed: January 29, 2018
    Date of Patent: October 22, 2019
    Assignee: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shuang-Yong Xu, Shengxi Guan, Hua Wei, Penghua Zhang, Dapeng Sun, Siu-hong Chan
  • Publication number: 20190276811
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Application
    Filed: March 15, 2019
    Publication date: September 12, 2019
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Patent number: 10294464
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Grant
    Filed: November 28, 2017
    Date of Patent: May 21, 2019
    Assignee: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Publication number: 20180171328
    Abstract: Compositions and methods are provided for enzymes with altered properties that involve a systematic approach to mutagenesis and a screening assay that permits selection of the desired proteins. Embodiments of the method are particularly suited for modifying specific properties of restriction endonucleases such as star activity. The compositions includes restriction endonucleases with reduced star activity as defined by an overall fidelity index improvement factor.
    Type: Application
    Filed: January 29, 2018
    Publication date: June 21, 2018
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shuang-Yong Xu, Shengxi Guan, Hua Wei, Penghua Zhang, Dapeng Sun, Siu-hong Chan
  • Publication number: 20180148701
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Application
    Filed: November 28, 2017
    Publication date: May 31, 2018
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Patent number: 9856464
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Grant
    Filed: April 19, 2016
    Date of Patent: January 2, 2018
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Publication number: 20160304840
    Abstract: Described herein is an inactivated viral particle comprising one or more transcription factor proteins packaged within the particle. A method for using the particle to make induced pluripotent stem cells is also provided.
    Type: Application
    Filed: October 31, 2014
    Publication date: October 20, 2016
    Applicant: New England Biolabs, Inc.
    Inventors: Dapeng Sun, Fanfan Chen, Xianghui Li, Ling Yu, Yanye Feng
  • Publication number: 20160289660
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Application
    Filed: April 19, 2016
    Publication date: October 6, 2016
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Patent number: 9462016
    Abstract: In a sharing session between a presenter and several attendees, the presenter can share any type of document quickly and without substantial prior preparation. The presenter's device identifies an active document-sharing window within the desktop sharing environment, and detects if there is a shared document in the active window. The presenter's device creates a framework for any detected shared document that is transmitted to each of the attendee devices. The framework contains information about the pages in the shared document, such that an attendee device can request a specific page in the shared document. At least the first page of the shared document is rendered to a page image and transmitted to the attendee devices. Upon request from an attendee device, page images of any of the remaining pages may be sent to the attendee device, allowing each attendee to view a different page than the presenter.
    Type: Grant
    Filed: August 20, 2013
    Date of Patent: October 4, 2016
    Assignee: Cisco Technology, Inc.
    Inventors: Haihua Huang, Hua Ouyang, Ling Chen, Jun Xiao, Dapeng Sun, Yong Qian