Patents by Inventor David A. Baker

David A. Baker has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230272446
    Abstract: Methods and systems for designing proteins are disclosed, as well as proteins and protein assemblies designed. A computing device can determine a protein repeating unit that includes one or more protein helices and one or more protein loops. The computing device can generate a protein backbone structure with a copy of the protein repeating unit. The computing device can determine whether a distance between a pair of helices of the protein backbone structure is between lower and upper distance thresholds. After determining that the distance between the pair of helices is between the lower and upper distance thresholds, the computing device can: generate a plurality of protein sequences based on the protein backbone structure, select a particular protein sequence of the plurality of protein sequences based on an energy landscape that has information about energy and distance from a target fold of the particular protein sequence, and generate an output based on the particular protein sequence.
    Type: Application
    Filed: May 5, 2023
    Publication date: August 31, 2023
    Inventors: Fabio PARMEGGIANI, TJ BRUNETTE, Po-Ssu HUANG, David BAKER
  • Publication number: 20230272047
    Abstract: The present disclosure provides transferring receptor binding polypeptides of the general formula H1-H2-E1-H3-E2-E3-H-4, herein H1, H2, H3, and H4 each independently comprise an alpha, helical domain of between 11-20 amino acids in length; E1, E2, and E3 each independently comprise a beta sheet of 5 amino acids in length; and optional amino acid linkers between domains.
    Type: Application
    Filed: July 28, 2021
    Publication date: August 31, 2023
    Inventors: Danny Sahtoe, Lauren MILLER, Lance Joseph STEWART, David BAKER
  • Patent number: 11732011
    Abstract: Disclosed herein are nanostructures and their use, where the nanostructures include (a) a plurality of first assemblies, each first assembly comprising a plurality of identical first polypeptides; (b) a plurality of second assemblies, each second assembly comprising a plurality of identical second polypeptides, wherein the second polypeptide differs from the first polypeptide; wherein the plurality of first assemblies non-covalently interact with the plurality of second assemblies to form a nanostructures; and wherein the nanostructure displays multiple copies of one or more paramyxovirus and/or pneumovirus F proteins or antigenic fragments thereof, on an exterior of the nanostructure.
    Type: Grant
    Filed: November 10, 2021
    Date of Patent: August 22, 2023
    Assignees: University of Washington, Institute for Research in Biomedicine
    Inventors: Neil P. King, David Baker, Brooke Fiala, Lance Joseph Stewart, Laurent Perez, Antonio Lanzavecchia, Jessica Marcandalli
  • Publication number: 20230250134
    Abstract: Polypeptide inhibitors of SARS-COV-2 are disclosed comprising an amino acid sequence at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical to the amino acid sequence selected from the group consisting of SEQ ID NOS: 1-17, 19-21, 23-34 and 100-101, and their use for treating and limiting development of SARS-COV-2 infection.
    Type: Application
    Filed: May 25, 2021
    Publication date: August 10, 2023
    Inventors: Longxing CAO, Brian COVENTRY, Inna GORESHNIK, Lauren MILLER, David BAKER, Lisa KOZODOY, John BOWEN, Lauren CARTER, James Brett CASE, Michael DIAMOND, Natasha EDMAN, Andrew HUNT, Michael Christopher JEWETT, Cassandra Jean OGOHARA, Young-jun PARK, Rashmi RAVICHANDRAN, Lance Joseph STEWART, David VEESLER, Bastian VOGELI, Alexandra C. WALLS, Kejia WU, Scott BOYKEN, George UEDA
  • Publication number: 20230233707
    Abstract: Antibody particles are disclosed comprising polypeptides comprising an (Fc) binding domain, a helical polypeptide monomer, and an oligomer domain, and either Tie2 antibodies or dimers, or tumor necrosis factor receptor superfamily antibodies, and uses thereof.
    Type: Application
    Filed: June 7, 2021
    Publication date: July 27, 2023
    Inventors: George UEDA, James LAZAROVITS, Jorge FALLAS, David BAKER, Hannele RUOHOLA-BAKER, Robert DIVINE, Yan (Blair) Ting ZHAO, Julie MATHIEU, Neil KING, Marti TOOLEY
  • Publication number: 20230192773
    Abstract: Disclosed herein are polypeptide comprising an amino acid sequence at least 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% identical to the amino acid sequence of any one of SEQ ID NOS: 1-4, oligomers thereof, and uses thereof.
    Type: Application
    Filed: April 28, 2021
    Publication date: June 22, 2023
    Inventors: Chunfu XU, Peilong LU, Tamer GAMAL EL-DIN, William A. CATTERALL, David BAKER
  • Publication number: 20230159595
    Abstract: Synthetic nanostructures, polypeptides that are useful, for example, in making synthetic nanostructures, and methods for using such synthetic nanostructures are disclosed herein.
    Type: Application
    Filed: September 22, 2022
    Publication date: May 25, 2023
    Inventors: David Baker, Jacob B. BALE, Neil P. KING, William H. SHEFFLER, Daniel ELLIS
  • Patent number: 11655278
    Abstract: De novo designed polypeptides that bind to IL-2 receptor ?c heterodimer (IL-2R?c), IL-4 receptor ?c heterodimer (IL-4R?c), or IL-13 receptor ? subunit (IL-13R?) are disclosed, as are methods for using and designing the polypeptides.
    Type: Grant
    Filed: September 13, 2021
    Date of Patent: May 23, 2023
    Assignees: UNIVERSITY OF WASHINGTON, THE LELAND STANFORD JUNIOR UNIVERSITY
    Inventors: Daniel Adriano Silva Manzano, Shawn Yu, David Baker, Kenan Christopher Garcia, Jamie Spangler, Carl Walkey, Umut Ulge
  • Publication number: 20230142283
    Abstract: Disclosed herein are junction polypeptides that can be used, for example, to join together protein building blocks via a rigid fusion to generate a wide range of protein shapes; fusion proteins comprising such junction polypeptides, polymers thereof, and methods for designing such junction polypeptides.
    Type: Application
    Filed: March 3, 2021
    Publication date: May 11, 2023
    Inventors: David BAKER, Matthew BICK, TJ BRUNETTE
  • Publication number: 20230130764
    Abstract: Polypeptides, and methods for their use, are disclosed that have an amino acid sequence at least 75% identical to the amino acid sequence of SEQ ID NO:1, are provided, wherein (a) the polypeptide degrades a PFQPQLPY (SEQ ID NO: 140) peptide and/or a PFPQPQQPF (SEQ ID NO: 68) at pH 4; (b) residue 467 is Ser, residue 267 is Glu, and residue 271 is Asp; and (c) the polypeptide comprises an amino acid change from SEQ ID NO: 1 at one or more residues selected from the group consisting of 221, 262E, 268, 269, 270, 319A, 320, 354E/Q/R/Y, 358S/Q/T, 368F/Q, 399, 402, 406, 424, 449, 461, 463, 105, 171, 172, 173, 174, and 456.
    Type: Application
    Filed: September 13, 2022
    Publication date: April 27, 2023
    Inventors: Ingrid Swanson PULTZ, Clancey WOLF, Justin Bloomfield SIEGEL, Christine Elaine TINBERG, Lance STEWART, David BAKER
  • Publication number: 20230114825
    Abstract: Polypeptides including an amino acid sequence at least 50% identical to the amino acid sequence selected from the group consisting of SEQ ID NOS: 1-3297 are provided, which are capable of forming protein homodimers containing tunable symmetric pockets.
    Type: Application
    Filed: October 7, 2022
    Publication date: April 13, 2023
    Inventors: David Baker, Derrick Hicks
  • Publication number: 20230065495
    Abstract: Disclosed herein are ?-barrel polypeptides including self-complementing multipartite ?-barrel polypeptides and circularly permuted ?-barrel polypeptides and methods for their design and use in mediating real-time monitoring of polypeptide-polypeptide association and dissociation events.
    Type: Application
    Filed: February 5, 2021
    Publication date: March 2, 2023
    Inventors: Jason C. KLIMA, David BAKER
  • Publication number: 20230021836
    Abstract: An aircraft includes a fuselage, a wing connected to and extending outward from the fuselage, and an engine mounted to the wing. The engine includes turbomachine defining a centerline axis, a fan, and an exhaust section with an outlet nozzle. The turbomachine defines a centerline axis. The fan is connected to and is disposed upstream from the turbomachine. The fan is disposed to rotate about the centerline axis. During operation of the engine, an exhaust stream is expelled from the outlet nozzle of the exhaust section. The exhaust stream defines a mean direction of flow in the downstream direction from the exhaust section. The mean direction of flow defines a first angle with the centerline axis of the turbomachine that is greater than zero such that the centerline axis is oriented downwardly along the vertical direction relative to the mean direction of flow of the exhaust stream.
    Type: Application
    Filed: July 22, 2021
    Publication date: January 26, 2023
    Inventors: David Baker Riddle, Keith Edward James Blodgett, Timothy Richard DePuy, William Joseph Bowden
  • Patent number: 11555381
    Abstract: A method of conveying a production fluid from an offshore subsea well to an offshore vessel includes deploying an inflatable bladder from the offshore vessel, the inflatable bladder including a bladder valve, and fluidly connecting the inflatable bladder to an offloading port positioned at a seafloor, wherein the offloading port includes a port valve and is in fluid communication with one or more subterranean hydrocarbon-bearing formations. The method further includes opening the bladder and port valves to discharge the production fluid from the offloading port into the inflatable bladder, and thereby resulting in a substantially filled bladder, closing the bladder and port valves, and fluidly disconnecting the substantially filled bladder from the offloading port.
    Type: Grant
    Filed: January 10, 2022
    Date of Patent: January 17, 2023
    Assignee: ExxonMobil Upstream Research Company
    Inventors: Deborah J. Davis, Sushil K. Mandot, David A. Baker, Zhen Li, Brian J. Fielding
  • Patent number: 11547046
    Abstract: A lawn mower may include a blade housing configured to house at least a first blade and a second blade, a shaft disposed to rotate within the blade housing, a powerhead configured to selectively turn the shaft responsive to application of power from a power source, and a blade coupler configured to selectively couple the first blade and/or the second blade to the shaft to produce different cutting performance conditions based on which of the first blade and/or the second blade is operably coupled to the shaft.
    Type: Grant
    Filed: October 30, 2019
    Date of Patent: January 10, 2023
    Assignee: HUSQVARNA AB
    Inventors: Brad Graham, Samuel Lattimore, David Baker, Jonathan Funk
  • Patent number: 11551660
    Abstract: Techniques are described in which sensor data is used to determine one or more of background noise or occupancy associated with a passenger cabin of a vehicle. The sensor data, in turn, is used to determine an operating state for one or more components of the vehicle (e.g., pumps, compressors, fans, blowers, etc.) such that an amount of background noise within the passenger cabin is reduced (e.g., when a passenger/occupant is present). In various examples, the operating state of the component may operate in a different, though louder, state (e.g., higher efficiency, greater power, etc.) when an occupant is not present or proximate the component.
    Type: Grant
    Filed: July 14, 2021
    Date of Patent: January 10, 2023
    Assignee: Zoox, Inc.
    Inventors: Daniel David Baker, Songmao Chen, Nicholas Nakjoo Kim
  • Publication number: 20230000680
    Abstract: A system for deploying an implant cut from a biological tissue into an eye of a patient including a delivery device and a nose cone assembly, a tubular shaft projecting from the distal end region of the nose cone and comprising a lumen. Related devices, systems, and methods are provided.
    Type: Application
    Filed: September 8, 2022
    Publication date: January 5, 2023
    Inventors: Tsontcho Ianchulev, Luke Clauson, Daniel Nelsen, David Robson, David Baker, Sean Buxton
  • Patent number: 11524979
    Abstract: Disclosed herein are macrocyclic polypeptides having no more than 3 ammo acid substitutions compared to the amino acid sequence of any one of SEQ ID NO: 1-2.37 or a mirror image thereof, wherein the polypeptide includes both L and D amino acids, libraries of such polypeptides, and uses thereof.
    Type: Grant
    Filed: June 14, 2018
    Date of Patent: December 13, 2022
    Assignee: University of Washington
    Inventors: Parisa Hosseinzadeh, David Baker, Gaurav Bhardwaj, Vikram K. Mulligan
  • Patent number: D986223
    Type: Grant
    Filed: April 19, 2021
    Date of Patent: May 16, 2023
    Assignee: GOOGLE LLC
    Inventors: Gina Reimann, Jung Cheng Su, Maj Isabelle Olsson, Dustin Lee, Jeremy David Baker
  • Patent number: D986858
    Type: Grant
    Filed: April 19, 2021
    Date of Patent: May 23, 2023
    Assignee: GOOGLE LLC
    Inventors: Gina Reimann, Jung Cheng Su, Maj Isabelle Olsson, Dustin Lee, Jeremy David Baker