Patents by Inventor Hesaam Esfandyarpour

Hesaam Esfandyarpour has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11810334
    Abstract: Methods and systems for determining whether brain tissue is indicative of a disorder, such as a neurodegenerative disorder, are provided. The methods and systems generally utilize data processing techniques to assess a level of congruence between measured parameters obtained from magnetic resonance imaging (MRI) data and simulated parameters obtained from computational modeling of brain tissues.
    Type: Grant
    Filed: December 20, 2019
    Date of Patent: November 7, 2023
    Assignee: DARMIYAN, INC.
    Inventors: Padideh Kamali-Zare, Kaveh Vejdani, Thomas Liebmann, Hesaam Esfandyarpour, Elham Khosravi, Pavan Krishnamurthy
  • Publication number: 20220186303
    Abstract: The present disclosure provides methods and systems for sequencing nucleic acid molecules. Methods may include sequencing double-stranded nucleic acids or single-stranded nucleic acids. Sequencing may include the use of nucleotides coupled to electrostatic moieties. The electrostatic moieties may be detected by a sensor array. The electrostatic moieties may be reversible electrostatic moieties that are cleaved from the nucleic acid molecule after incorporation of the nucleotide. The electrostatic moieties may be irreversible electrostatic moieties. Nucleotides comprising irreversible electrostatic moieties may be incorporated into the nucleic acid molecule, detected by the sensor array, and exchanged for non-detectable nucleotides.
    Type: Application
    Filed: July 23, 2021
    Publication date: June 16, 2022
    Inventors: Hesaam Esfandyarpour, Maryam Jouzi, Seth Stern, Paul Kenney
  • Patent number: 11286522
    Abstract: The present disclosure relates to systems and methods for high efficiency electronic sequencing of nucleic acids and molecular detection.
    Type: Grant
    Filed: August 20, 2018
    Date of Patent: March 29, 2022
    Assignee: GENAPSYS, INC.
    Inventor: Hesaam Esfandyarpour
  • Patent number: 11155865
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Grant
    Filed: July 18, 2018
    Date of Patent: October 26, 2021
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Patent number: 11021748
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Grant
    Filed: October 10, 2019
    Date of Patent: June 1, 2021
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Patent number: 11015219
    Abstract: Provided herein are systems and methods for sequencing, amplifying, detecting, analyzing, and/or performing sample preparation procedures for nucleic acids and other biomolecules.
    Type: Grant
    Filed: July 28, 2017
    Date of Patent: May 25, 2021
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Max Greenfeld, Meysam R. Barmi, Kosar B. Parizi, Hamid Rategh, Amirhossein Samakar
  • Patent number: 10900075
    Abstract: The present disclosure provides methods and systems for sequencing nucleic acid molecules. Methods may include sequencing double-stranded nucleic acids or single-stranded nucleic acids. Sequencing may include the use of nucleotides coupled to electrostatic moieties. The electrostatic moieties may be detected by a sensor array. The electrostatic moieties may be reversible electrostatic moieties that are cleaved from the nucleic acid molecule after incorporation of the nucleotide. The electrostatic moieties may be irreversible electrostatic moieties. Nucleotides comprising irreversible electrostatic moieties may be incorporated into the nucleic acid molecule, detected by the sensor array, and exchanged for non-detectable nucleotides.
    Type: Grant
    Filed: September 25, 2018
    Date of Patent: January 26, 2021
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Maryam Jouzi, Seth Stern, Paul Kenney
  • Patent number: 10787705
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Grant
    Filed: February 14, 2018
    Date of Patent: September 29, 2020
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Publication number: 20200255893
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Application
    Filed: October 10, 2019
    Publication date: August 13, 2020
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Publication number: 20200232024
    Abstract: Provided herein are systems and methods for processing and analyzing nucleic acids and other biomolecules. Methods may include processing nucleic acid molecules in an emulsion of droplets. Methods of analyzing nucleic acid molecules may include coupling nucleic acids to a bead or other support. Methods may include analysis of nucleic acid molecules using a redox mediator. In some cases, analysis of the nucleic acid molecule includes determining a nucleotide sequence of the nucleic acid molecule.
    Type: Application
    Filed: December 12, 2019
    Publication date: July 23, 2020
    Inventors: Hesaam Esfandyarpour, Kosar Parizi, Saurabh Paliwal, Seth Stern, Paul Kenney, Meysam R. Barmi, Ali Nabi, Hamid Rategh
  • Publication number: 20200232028
    Abstract: Provided herein are devices and methods suitable for sequencing, amplifying, analyzing, and performing sample preparation procedures for nucleic acids and other biomolecules.
    Type: Application
    Filed: January 7, 2020
    Publication date: July 23, 2020
    Inventors: Hesaam Esfandyarpour, Hamid Rategh, Meysam R. Barmi, Kosar B. Parizi, Kambiz Kaviani
  • Publication number: 20200206736
    Abstract: The present disclosure provides microfluidic devices, systems and methods for sample preparation and/or analysis. A microfluidic device can include a first channel having a sequence of (n) chambers each having a first volume (v). The first channel can include one or more valves at opposing ends of the first channel that fluidically isolate the first channel. The microfluidic device can further include a second channel in fluid communication with the first channel. The second channel can include at least one second chamber having a total second volume that is at least equal to the total volume of the first channel (n*v). The second channel can include one or more valves at opposing ends of the second channel that fluidically isolate the second channel from the first channel.
    Type: Application
    Filed: August 7, 2019
    Publication date: July 2, 2020
    Inventors: Seth Stern, Hesaam Esfandyarpour, David Eberhart
  • Publication number: 20200143948
    Abstract: Methods and systems for determining whether brain tissue is indicative of a disorder, such as a neurodegenerative disorder, are provided. The methods and systems generally utilize data processing techniques to assess a level of congruence between measured parameters obtained from magnetic resonance imaging (MRI) data and simulated parameters obtained from computational modeling of brain tissues.
    Type: Application
    Filed: December 20, 2019
    Publication date: May 7, 2020
    Inventors: Padideh KAMALI-ZARE, Kaveh VEJDANI, Thomas LIEBMANN, Hesaam ESFANDYARPOUR
  • Patent number: 10612091
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Grant
    Filed: February 22, 2019
    Date of Patent: April 7, 2020
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Patent number: 10570449
    Abstract: Provided herein are devices and methods suitable for sequencing, amplifying, analyzing, and performing sample preparation procedures for nucleic acids and other biomolecules.
    Type: Grant
    Filed: October 5, 2017
    Date of Patent: February 25, 2020
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Hamid Rategh, Meysam R. Barmi, Kosar B. Parizi, Kambiz Kaviani
  • Patent number: 10573414
    Abstract: Methods and systems for determining whether brain tissue is indicative of a disorder, such as a neurodegenerative disorder, are provided. The methods and systems generally utilize data processing techniques to assess a level of congruence between measured parameters obtained from magnetic resonance imaging (MRI) data and simulated parameters obtained from computational modeling of brain tissues.
    Type: Grant
    Filed: May 23, 2018
    Date of Patent: February 25, 2020
    Assignee: DARMIYAN, INC.
    Inventors: Padideh Kamali-Zare, Kaveh Vejdani, Thomas Liebmann, Hesaam Esfandyarpour
  • Patent number: 10544456
    Abstract: Provided herein are systems and methods for processing and analyzing nucleic acids and other biomolecules. Methods may include processing nucleic acid molecules in an emulsion of droplets. Methods of analyzing nucleic acid molecules may include coupling nucleic acids to a bead or other support. Methods may include analysis of nucleic acid molecules using a redox mediator. In some cases, analysis of the nucleic acid molecule includes determining a nucleotide sequence of the nucleic acid molecule.
    Type: Grant
    Filed: July 20, 2017
    Date of Patent: January 28, 2020
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Parizi, Saurabh Paliwal, Seth Stern, Paul Kenney, Meysam R. Barmi, Ali Nabi, Hamid Rategh
  • Patent number: 10539527
    Abstract: A sensing apparatus for sensing target materials including biological or chemical molecules in a fluid. One such apparatus includes a semiconductor-on-insulator (SOI) structure having an electrically-insulating layer, a fluidic channel supported by the SOI structure and configured and arranged to receive and pass a fluid including the target materials, and a semiconductor device including at least three electrically-contiguous semiconductor regions doped to exhibit a common polarity. The semiconductor regions include a sandwiched region sandwiched between two of the other semiconductor regions, and configured and arranged adjacent to the fluidic channel with a surface directed toward the fluidic channel for coupling to the target materials in the fluidic channel, and further arranged for responding to a bias voltage. The sensing apparatus also includes an amplification circuit in or on the SOI and that is arranged to facilitate sensing of the target material near the fluidic channel.
    Type: Grant
    Filed: April 10, 2018
    Date of Patent: January 21, 2020
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Kosar Baghbani-Parizi, Yoshio Nishi, Hesaam Esfandyarpour
  • Patent number: 10494672
    Abstract: The invention relate to systems and methods for sequencing polynucleotides, as well as detecting reactions and binding events involving other biological molecules. The systems and methods may employ chamber-free devices and nanosensors to detect or characterize such reactions in high-throughput. Because the system in many embodiments is reusable, the system can be subject to more sophisticated and improved engineering, as compared to single use devices.
    Type: Grant
    Filed: February 22, 2019
    Date of Patent: December 3, 2019
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Kosar Baghbani Parizi, Mark F. Oldham, Eric S. Nordman, Richard T. Reel, Susanne Baumhueter, Cheryl Heiner, Frank Lee
  • Patent number: 10472674
    Abstract: A method comprises magnetically holding a bead carrying biological material (e.g., nucleic acid, which may be in the form of DNA fragments or amplified DNA) in a specific location of a substrate, and applying an electric field local to the bead to isolate the biological material or products or byproducts of reactions of the biological material. For example, the bead is isolated from other beads having associated biological material. The electric field in various embodiments concentrates reagents for an amplification or sequencing reaction, and/or concentrates and isolates detectable reaction by-products. For example, by isolating nucleic acids around individual beads, the electric field can allow for clonal amplification, as an alternative to emulsion PCR. In other embodiments, the electric field isolates a nanosensor proximate to the bead, to facilitate detection of at least one of local pH change, local conductivity change, local charge concentration change and local heat.
    Type: Grant
    Filed: November 23, 2016
    Date of Patent: November 12, 2019
    Assignee: GENAPSYS, INC.
    Inventors: Hesaam Esfandyarpour, Mark Oldham