Abstract: Methods, systems, and media for managing dynamic memory are disclosed. Embodiments may disclose identifying nodes with having memory for dynamic storage, and reserving a portion of the memory from the identified nodes for a heap pool. After generating a heap pool, embodiments may allocate dynamic storage from the heap pool to tasks received that are associated with one of the identified nodes. More specifically, embodiments identify the node or home node associated with the task, the amount of dynamic storage requested by the task, and create a heap object in the node associated with the task to provide the requested dynamic storage. Some embodiments involve de-allocating the dynamic storage assigned to the task upon receipt of an indication that the task is complete and the dynamic storage is no longer needed for the task. Several of such embodiments return the de-allocated dynamic storage to the heap pool for reuse.

Abstract: This invention relates to modulating (e.g., inhibiting) protein tyrosine phosphatase 1B (PTP1B).

Abstract: A data collector for a massively parallel computer system obtains call-return stack traceback data for multiple nodes by retrieving partial call-return stack traceback data from each node, grouping the nodes in subsets according to the partial traceback data, and obtaining further call-return stack traceback data from a representative node or nodes of each subset. Preferably, the partial data is a respective instruction address from each node, nodes having identical instruction address being grouped together in the same subset. Preferably, a single node of each subset is chosen and full stack traceback data is retrieved from the call-return stack within the chosen node.

Abstract: A method and apparatus for dynamically rerouting node processes on the compute nodes of a massively parallel computer system using hint bits to route around failed nodes or congested networks without restarting applications executing on the system. When a node has a failure or there are indications that it may fail, the application software on the system is suspended while the data on the failed node is moved to a backup node. The torus network traffic is routed around the failed node and traffic for the failed node is rerouted to the backup node. The application can then resume operation without restarting from the beginning.

Abstract: A method and apparatus creates and manages persistent memory (PM) in a multi-node computing system. A PM Manager in the service node creates and manages pools of nodes with various sizes of PM. A node manager uses the pools of nodes to load applications to the nodes according to the size of the available PM. The PM Manager can dynamically adjust the size of the PM according to the needs of the applications based on historical use or as determined by a system administrator. The PM Manager works with an operating system kernel on the nodes to provide persistent memory for application data and system metadata. The PM Manager uses the persistent memory to load applications to preserve data from one application to the next. Also, the data preserved in persistent memory may be system metadata such as file system data that will be available to subsequent applications.

Abstract: A method and apparatus for fault recovery of on a parallel computer system from a soft failure without ending an executing job on a partition of nodes. In preferred embodiments a failed hardware recovery mechanism on a service node uses a heartbeat monitor to determine when a node failure occurs. Where possible, the failed node is reset and re-loaded with software without ending the software job being executed by the partition containing the failed node.

Abstract: Disclosed is an apparatus, method, and program product that enables distribution of operating system resources on a nodal basis in the same proportions as the expected system workload. The preferred embodiment of the present invention accomplishes this by assigning various types of weights to each node to represent their proportion of the overall balance within the system. Target Weights represent the desired distribution of the workload based on the existing proportions of processor and memory resources on each node. The actual workload balance on the system is represented by Current Weights, which the operating system strives to keep as close to the Target Weights as possible, on an ongoing basis. When the system is started, operating system services distribute their resources nodally in the same proportions as the Target Weights, and can request to be notified if the Target Weights ever change.

Abstract: A method and apparatus for fast backup of a set of compute nodes to save the state of the software in a parallel computer system. A fast backup mechanism in the service node of the computer system configures a set of nodes to be used for a backup and when needed uses the network hardware to perform a fast backup from node to node from an original set of nodes to the backup set of nodes. In the preferred embodiments a the fast backup is done with respect to a midplane or rack of nodes copied to a backup rack of nodes.

Abstract: Embodiments off the invention provide a mechanism for process migration on a massively parallel computer system. In particular, embodiments of the invention may be used to update process state data for a migrated compute node, such as MPI (or other communication library) state data, across a full collection of compute nodes present in a given parallel system executing a parallel task. Migrating a process form one compute node to another may be useful to address a variety of sub-optimal operating conditions. For example, one or more processes may be migrated to cure network congestion resulting from a poorly mapped task or when a compute node is predicted to experience a hardware failure.

Abstract: A variable reluctance load cell for measuring the static or slowly fluctuating load, or tension, on devices is contained in a support tube. A sensor in the tube utilizes opposing C and I shaped magnetic cores attached to opposing ends of the support tube. A magnetic circuit is formed having an inductance defined by the size of the gap between the magnetic cores with the reluctance dominated by the gap. The sensor inductance is coupled with a fixed, predetermined capacitance in a resonant LC circuit, and the resonant frequency is a function of the gap. The sensor is in a cavity within the tube, and the cavity is sealed in a manner that prevents water or other damaging agents from entering the sensor. In this manner, mounting the sensor and tube to a static device and measuring the AC voltage at the sensor, the amount of load, or stress can be determined.

Abstract: Protein tyrosine phosphatases (PTPases) such as PTP1B can play a role in regulating a wide variety of cellular responses such as insulin signaling. Substituted bicyclic fused-thiophene compounds can inhibit PTP1B and thereby induce greater insulin sensitivity. Accordingly, PTP1B inhibition can provide an alternate treatment for PTPase-mediated disorders such as diabetes.

Abstract: An apparatus and method for overcoming a torus network failure in a parallel computer system. A mesh routing mechanism in the service node of the computer system configures the nodes from a torus to a mesh network when a failure occurs in the torus network. The mesh routing mechanism takes advantage of cutoff registers in each node to route node to node data transfers around the faulty node or network connection.

Abstract: A method and apparatus for dynamically rerouting node processes on the compute nodes of a massively parallel computer system using hint bits to route around failed nodes or congested networks without restarting applications executing on the system. When a node has a failure or there are indications that it may fail, the application software on the system is suspended while the data on the failed node is moved to a backup node. The torus network traffic is routed around the failed node and traffic for the failed node is rerouted to the backup node. The application can then resume operation without restarting from the beginning.

Abstract: Methods, systems, and media for managing dynamic memory are disclosed. Embodiments may disclose identifying nodes with having memory for dynamic storage, and reserving a portion of the memory from the identified nodes for a heap pool. After generating a heap pool, embodiments may allocate dynamic storage from the heap pool to tasks received that are associated with one of the identified nodes. More specifically, embodiments identify the node or home node associated with the task, the amount of dynamic storage requested by the task, and create a heap object in the node associated with the task to provide the requested dynamic storage. Some embodiments involve de-allocating the dynamic storage assigned to the task upon receipt of an indication that the task is complete and the dynamic storage is no longer needed for the task. Several of such embodiments return the de-allocated dynamic storage to the heap pool for reuse.

Abstract: A method and apparatus for fault recovery of on a parallel computer system from a soft failure without ending an executing job on a partition of nodes. In preferred embodiments a failed hardware recovery mechanism on a service node uses a heartbeat monitor to determine when a node failure occurs. Where possible, the failed node is reset and re-loaded with software without ending the software job being executed by the partition containing the failed node.

Abstract: A method and apparatus for fast backup of a set of compute nodes to save the state of the software in a parallel computer system. A fast backup mechanism in the service node of the computer system configures a set of nodes to be used for a backup and when needed uses the network hardware to perform a fast backup from node to node from an original set of nodes to the backup set of nodes. In the preferred embodiments a the fast backup is done with respect to a midplane or rack of nodes copied to a backup rack of nodes.

Abstract: A data collector for a massively parallel computer system obtains call-return stack traceback data for multiple nodes by retrieving partial call-return stack traceback data from each node, grouping the nodes in subsets according to the partial traceback data, and obtaining further call-return stack traceback data from a representative node or nodes of each subset. Preferably, the partial data is a respective instruction address from each node, nodes having identical instruction address being grouped together in the same subset. Preferably, a single node of each subset is chosen and full stack traceback data is retrieved from the call-return stack within the chosen node.

Abstract: Methods, systems, and media for managing dynamic memory are disclosed. Embodiments may disclose identifying nodes with having memory for dynamic storage, and reserving a portion of the memory from the identified nodes for a heap pool. After generating a heap pool, embodiments may allocate dynamic storage from the heap pool to tasks received that are associated with one of the identified nodes. More specifically, embodiments identify the node or home node associated with the task, the amount of dynamic storage requested by the task, and create a heap object in the node associated with the task to provide the requested dynamic storage. Some embodiments involve de-allocating the dynamic storage assigned to the task upon receipt of an indication that the task is complete and the dynamic storage is no longer needed for the task. Several of such embodiments return the de-allocated dynamic storage to the heap pool for reuse.

Abstract: Embodiments of the present invention provide techniques for protecting critical sections of code being executed in a lightweight kernel environment suited for use on a compute node of a parallel computing system. These techniques avoid the overhead associated with a full kernel mode implementation of a network layer, while also allowing network interrupts to be processed without corrupting shared memory state. In one embodiment, a fast user-space function sets a flag in memory indicating that interrupts should not progress and also provides a mechanism to defer processing of the interrupt.

Abstract: Embodiments of the present invention provide techniques for protecting critical sections of code being executed in a lightweight kernel environment suited for use on a compute node of a parallel computing system. These techniques avoid the overhead associated with a full kernel mode implementation of a network layer, while also allowing network interrupts to be processed without corrupting shared memory state. In one embodiment, a system call may be used to disable interrupts upon entry to a routine configured to process an event associated with the interrupt.