Patents Assigned to Applera Corporation
  • Patent number: 7459679
    Abstract: A mass spectrometer system has an elongated rod set having an entrance end, an exit end, a plurality of rods and a central longitudinal axis.
    Type: Grant
    Filed: November 13, 2006
    Date of Patent: December 2, 2008
    Assignees: MDS Inc., Applera Corporation
    Inventor: Alexander Loboda
  • Publication number: 20080290283
    Abstract: A system and method for characterizing contributions to signal noise associated with charge-coupled devices adapted for use in biological analysis. Dark current contribution, readout offset contribution, photo response non-uniformity, and spurious charge contribution can be determined by the methods of the present teachings and used for signal correction by systems of the present teachings.
    Type: Application
    Filed: July 28, 2008
    Publication date: November 27, 2008
    Applicant: Applera Corporation
    Inventors: Austin B. Tomaney, Mark F. Oldham
  • Publication number: 20080290037
    Abstract: Methods and apparatuses for separating biological particles are provided.
    Type: Application
    Filed: May 23, 2007
    Publication date: November 27, 2008
    Applicant: Applera Corporation
    Inventor: Yingjie Liu
  • Publication number: 20080293127
    Abstract: A method for substantially eliminating a cross-linking element of a pressure sensitive adhesive by heating the pressure sensitive adhesive at a temperature of at least 180° C. for a period of time required to thermally decompose the cross-linking element of the pressure sensitive adhesive.
    Type: Application
    Filed: May 22, 2007
    Publication date: November 27, 2008
    Applicant: Applera Corporation
    Inventors: Yuh-Min Chiang, Aldrich N.K. Lau
  • Patent number: 7454988
    Abstract: The present disclosure relates to a method for sampling a fluid, such as air. As fluid flows through a device, a scrubbing liquid is positioned in a pattern to contact the fluid and constituents in the fluid are transferred to in the liquid.
    Type: Grant
    Filed: February 9, 2006
    Date of Patent: November 25, 2008
    Assignee: Applera Corporation
    Inventor: Roy H. Tan
  • Publication number: 20080286772
    Abstract: The present teachings relate to improved methods, kits, and reaction mixtures for amplifying nucleic acids. In some embodiments a novel direct buffer formulation is provided which allows for the direct amplification of the nucleic acids in a crude sample with minimal sample purification.
    Type: Application
    Filed: May 17, 2007
    Publication date: November 20, 2008
    Applicant: APPLERA CORPORATION
    Inventors: Chien-Wei Chang, Dennis Wang, Lori K. Hennessy
  • Publication number: 20080288178
    Abstract: The present teachings provide a device including a memory. According to various embodiments, the memory is readable, writable, and rewritable. The present teachings further provide processing stations, e.g., for carrying out electrophoresis, pcr, genetic analysis, sample preparation, and/or sample cleanup, etc., that are capable of reading from and/or writing/rewriting to such memory.
    Type: Application
    Filed: June 3, 2008
    Publication date: November 20, 2008
    Applicant: Applera Corporation
    Inventor: Jeffery D. Frazier
  • Publication number: 20080284602
    Abstract: Biological reagent carrier devices and methods are disclosed, which employ RFID techniques to associate information with biological reagents.
    Type: Application
    Filed: June 30, 2008
    Publication date: November 20, 2008
    Applicant: APPLERA CORPORATION
    Inventors: Richard D. MORRIS, Jerome A. MACK
  • Publication number: 20080286796
    Abstract: The present invention is based on the discovery of genetic polymorphisms that are associated with neurodegenerative disease, particularly Alzheimer's disease and Parkinson's disease. In particular, the present invention relates to nucleic acid molecules containing the polymorphisms, variant proteins encoded by such nucleic acid molecules, reagents for detecting the polymorphic nucleic acid molecules and proteins, and methods of using the nucleic acid and proteins as well as methods of using reagents for their detection.
    Type: Application
    Filed: May 1, 2008
    Publication date: November 20, 2008
    Applicant: APPLERA CORPORATION
    Inventors: Andrew Grupe, Yonghong Li
  • Publication number: 20080281466
    Abstract: Systems and methods are provided that can include a storage and retrieval robot operating under program control to extract a selective number of support beads from a storage or retainment region, for dispensing to titer wells or other vessels for assays and other purposes. According to various embodiments, the storage and retrieval robot can position a capture device over any one or more storage wells containing oligonucleotide or other material support beads, and withdraw or extract those support beads into a collection tube under vacuum pressure or other force. According to various embodiments, a selected number of support beads can be extracted, using a linear motor piston to limit available space for support bead insertion. According to various embodiments, the collected support beads can be dispensed into one or more destination tubes, wells, or other containers, surfaces, vessels, receptacles or mixture containment region, for use in assays or other purposes.
    Type: Application
    Filed: May 11, 2007
    Publication date: November 13, 2008
    Applicant: Applera Corporation
    Inventor: Charles S. Vann
  • Publication number: 20080281089
    Abstract: Methods are provided for differential extraction of DNA from at least two different cell types. Systems for carrying out the differential extraction methods are also provided. A kit is also provided for differential extraction of DNA from at least two different cell types using a multi-compartment container.
    Type: Application
    Filed: May 8, 2008
    Publication date: November 13, 2008
    Applicant: Applera Corporation
    Inventor: Yingjie Liu
  • Publication number: 20080274466
    Abstract: The present invention relates to the enrichment of specific target sequences Enrichment can be achieved through the formation of a heteroduplex that includes the specific target sequence and then the specific cleavage of the heteroduplex. A binding moiety is then added to the cleaved heteroduplex, allowing for the subsequent manipulation of the specific target sequence in the heteroduplex.
    Type: Application
    Filed: December 28, 2007
    Publication date: November 6, 2008
    Applicant: Applera Corporation
    Inventor: Kevin J. McKernan
  • Patent number: 7445901
    Abstract: Methods and compositions for inhibiting and/or inactivating nucleases by employing nuclease inhibitors are provided. The nuclease inhibitors comprise anti-nuclease antibodies and non-antibody nuclease inhibitors. The anti-nuclease antibodies of the present invention may be a polyclonal or monoclonal antibodies, and may be anti-ribonuclease antibodies, anti-deoxyribonuclease antibodies, or antibodies to non-specific nucleases. A preferred embodiment comprises at least two nuclease inhibitors, and is referred to as a nuclease inhibitor cocktail. In some specific embodiments, the invention concerns methods of performing in vitro translation comprising obtaining a first nuclease inhibitor, which inhibitor is further defined as an anti-nuclease antibody, and placing the anti-nuclease antibody in an in vitro translation reaction. In many cases, the in vitro translation reaction comprises at least one nuclease, which may be a ribonuclease, a deoxyribonuclease, or a nonspecific nuclease.
    Type: Grant
    Filed: December 6, 2006
    Date of Patent: November 4, 2008
    Assignee: Applera Corporation
    Inventors: W. Antoni Kudlicki, Matthew M. Winkler, Brittan L. Pasloske
  • Publication number: 20080265139
    Abstract: An imaging system for collecting images of signals associated with a sample tile comprising a stage supporting the sample tile, a ring illuminator system emitting a uniform excitation energy upon an entirety of the sample tile causing at least a first signal to be generated from the sample tile, and an image collecting device collecting a first image of the first signal. The image collecting device further collecting a second image of a second signal emitted from the sample tile, wherein the second signal being different than the first signal.
    Type: Application
    Filed: June 30, 2008
    Publication date: October 30, 2008
    Applicant: APPLERA CORPORATION
    Inventors: MARK F. OLDHAM, Howard G. King, Douwe D. Haga, Tracy L. Ferea
  • Publication number: 20080268509
    Abstract: Novel linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye are provided. These linkers faciliate the efficient transfer of energy between a donor and acceptor dye in an energy transfer dye. One of these linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye has the general structure R21Z1C(O)R22R28 where R21 is a C1-5 alkyl attached to the donor dye, C(O) is a carbonyl group, Z1 is either NH, sulfur or oxygen, R22 is a substituent which includes an alkene, diene, alkyne, a five and six membered ring having at least one unsaturated bond or a fused ring structure which is attached to the carbonyl carbon, and R28 includes a functional group which attaches the linker to the acceptor dye.
    Type: Application
    Filed: December 29, 2006
    Publication date: October 30, 2008
    Applicant: Applera Corporation
    Inventors: Linda G. Lee, Sandra L. Spurgeon, Barnett Rosenblum
  • Publication number: 20080268448
    Abstract: The invention relates to a method for simultaneous quantification of human nuclear DNA and human male DNA in a biological sample while also detecting the presence of PCR inhibitors in a single reaction. The multiplex quantification method also provides a ratio of human nuclear and male DNA present in a biological sample. Such sample characterization is useful for achieving efficient and accurate results in downstream molecular techniques such as genotyping.
    Type: Application
    Filed: February 20, 2008
    Publication date: October 30, 2008
    Applicant: Applera Corporation
    Inventors: Jaiprakash G. Shewale, Manohar Furtado, Pius Brzoska, Maura Barbisin, Rixun Fang, Michael Malicdem, Cristin O'Shea
  • Publication number: 20080269076
    Abstract: A system and method for synthesizing a peptide, a nucleic acid sequence, an oligonucleotide, a DNA sequence, an RNA sequence, or the like, inside an array of capillary tubes, is provided. The system can comprise an array of capillary tubes. Each of the capillary tubes in the array of capillary tubes can comprise a first end, a second end, an inner wall, and a sequence linker bonded to the inner wall. The system can comprise a pressure control source that can be in fluid communication with each of the first ends of the array of capillary tubes. The system can comprise a reagent container support, wherein the second end of each of the capillary tubes can be adapted to move towards and/or away from the reagent container support.
    Type: Application
    Filed: May 4, 2006
    Publication date: October 30, 2008
    Applicant: Applera Corporation
    Inventor: Sergey V. Ermakov
  • Publication number: 20080269074
    Abstract: This invention pertains to the field of combination oligomers, including the block synthesis of combination oligomers in the absence of a template, as well as related methods, kits, libraries and other compositions.
    Type: Application
    Filed: December 26, 2006
    Publication date: October 30, 2008
    Applicant: Applera Corporation
    Inventors: James M. Coull, Mark J. Fiandaca, Mark D. Kristjanson, Jens J. Hyldig-Nielsen, Theresa S. Creasey
  • Publication number: 20080267829
    Abstract: A sample substrate configured for samples of biological material is provided. The sample substrate has a dual chambered sample well separated by a wall that may be punctured or otherwise breached to allow mixing of material contained in the two initially separate chambers. The chambers are connected by channels to fluid reservoirs, wherein the channels can be staked to prevent further fluid flow into and out of the chambers. Methods of loading a sample substrate are also provided.
    Type: Application
    Filed: February 15, 2008
    Publication date: October 30, 2008
    Applicant: Applera Corporation
    Inventor: Donald R. Sandell
  • Patent number: 7435545
    Abstract: According to a method of determining a size of a sample polynucleotide, a sample polynucleotide is subjected to electrophoresis in the presence of a fluorescent compound having a first fluorescence spectrum. Detection of light of the first fluorescence spectrum is indicative of the presence of the sample polynucleotide. One or more size standards are also subjected to electrophoresis, optionally in the presence of the sample polynucleotide. If more than one size standard is used, the different size standards typically have different mobilities. The size standards are generally essentially or completely free of polynucleotides. Migration coordinates, e.g., migration times, of the sample polynucleotide and size standard(s) are determined. A size of the sample polynucleotide can be determined using the migration coordinate of the sample polynucleotide and the migration coordinate(s) of the size standard(s).
    Type: Grant
    Filed: April 11, 2005
    Date of Patent: October 14, 2008
    Assignee: Applera Corporation
    Inventors: Zhaowei Liu, Thomas E. Kane