Patents Assigned to Arryx, Inc.
  • Publication number: 20160116490
    Abstract: Methods and devices for evaluating a sample, e.g., a plasma sample, from a subject, for detecting a target red blood cell protein or antibody are disclosed. In one embodiment, optimized antibody screening methods and devices significantly reduce the level of non-specific binding to a surface (e.g., a test surface bound with a red blood cell (rbcm) preparation), thus allowing for more efficient detection and reduced test time. In one embodiment, the optimized antibody screening method includes an immunoglobulin G (IgG) binding moiety that binds selectively and specifically to the plasma IgG present relative to the binding to the lysed rbcm preparation. In another embodiment, an optimized antibody screening method is disclosed whereby non-specific binding caused by lysed red blood cell membrane preparations can be reduced by an agent that specifically cleaves a human IgG in the hinge region.
    Type: Application
    Filed: August 7, 2013
    Publication date: April 28, 2016
    Applicant: ARRYX, INC.
    Inventors: Christopher R. Knutson, Sridevi Kurella, Derek D. Doorneweerd, Christopher F. Grant, Timothy R. Kline
  • Patent number: 9176152
    Abstract: The present invention relates to methods and apparatuses for the detection of positional freedom of particles used in biological, biochemical, physical, biophysical, and chemical analyses. In particular, the present invention relates to methods and apparatuses which can detect and characterize a population of particles/cells based upon their detected mobility. In one embodiment consistent with the invention, detection of certain cells is based on differences detected in populations of cells that bind to a substrate and those that exhibit weaker binding forces. Initially, cells are settled on the substrate, and in the presence of gravitational, natural thermodynamic pressure fluctuations, and other random or applied forces, some of the particles may exhibit translational movement. Particle movement is detected, and measurements are computed, according to the methods and apparatuses of the present invention, to determine the binding of specific analytes.
    Type: Grant
    Filed: May 25, 2011
    Date of Patent: November 3, 2015
    Assignee: Arryx, INC
    Inventors: Christopher Knutson, Osman Akcakir, Haojun Fu
  • Patent number: 9081022
    Abstract: A rotor is provided for use in a centrifuge system configured to spin the rotor for separating complex fluids. The rotor includes a housing configured to be secured by the centrifuge system and several chambers formed in the housing. Each chamber includes a first chamber portion having a port formed therein and a second chamber portion in fluid communication with the port of the first chamber portion. The second chamber portion may be disposed generally below the port of the first chamber portion. Other rotor designs and methods for separating complex fluids are further disclosed.
    Type: Grant
    Filed: February 1, 2012
    Date of Patent: July 14, 2015
    Assignee: ARRYX, INC.
    Inventors: Matthew K. Runyon, Daniel M. Mueth, Sergio O. Guevara, Haojun Fu
  • Publication number: 20130274119
    Abstract: The present invention relates to methods and apparatuses for the detection of positional freedom of particles used in biological, biochemical, physical, biophysical, and chemical analyses. In particular, the present invention relates to methods and apparatuses which can detect and characterize a population of particles/cells based upon their detected mobility. In one embodiment consistent with the invention, detection of certain cells is based on differences detected in populations of cells that bind to a substrate and those that exhibit weaker binding forces. Initially, cells are settled on the substrate, and in the presence of gravitational, natural thermodynamic pressure fluctuations, and other random or applied forces, some of the particles may exhibit translational movement. Particle movement is detected, and measurements are computed, according to the methods and apparatuses of the present invention, to determine the binding of specific analytes.
    Type: Application
    Filed: May 25, 2011
    Publication date: October 17, 2013
    Applicant: ARRYX, INC.
    Inventors: Christopher Knutson, Osman Akcakir, Haojun Fu
  • Publication number: 20130273571
    Abstract: The present invention relates to producing more densely functionalized indicator cells which along, with other components, can be used to detect the presence or absence of antibodies or antigens, by using the A, B, AB and MNS antigens which have a greater degree of expression than the conventionally used D antigen to label the indicator cells with IgG. The present antigen systems have levels of expression that approach one million antigens per cell, which is in great contrast to the conventional D antigen sites of about 10,000-30,000 antigens per cell. This marked increase in the antigen systems level of expression could produce a boost in the kinetics and the magnitude of the binding of the indicator cell to the solid phase, which improves assay performance.
    Type: Application
    Filed: May 5, 2011
    Publication date: October 17, 2013
    Applicant: ARRYX, INC.
    Inventors: Christopher Knutson, Derek David Doorneweerd
  • Publication number: 20130260396
    Abstract: The present invention relates to an instrument and a measurement apparatus and methodology that yields a measurement and test methodology that characterizes a population of cells/particles or detects a sub-population of cells/particles based on their detected mobility in a quick and efficient manner.
    Type: Application
    Filed: May 25, 2011
    Publication date: October 3, 2013
    Applicant: ARRYX, INC.
    Inventor: Osman Akcakir
  • Publication number: 20120202225
    Abstract: Methods and devices for evaluating a sample from a subject for detecting a target red blood cell protein or antibody are disclosed. In one embodiment, optimized antibody screening methods and devices significantly reduce the level of non-specific binding to a surface (e.g., a test surface bound with a red blood cell preparation), thus allowing for more efficient detection and reduced test time. In other embodiments, the invention provides methods and devices for target capturing that include a substantially planar surface, optionally having an optimized angle, for capture. Alternative solid phase geometries for capture are disclosed. Optimized methods for cell deposition are also disclosed. Thus, optimized methods, devices, kits, assays for evaluating a sample are disclosed.
    Type: Application
    Filed: February 1, 2012
    Publication date: August 9, 2012
    Applicant: ARRYX, INC.
    Inventors: Christopher R. Knutson, Christopher F. Grant, Timothy R. Kline, Derek D. Doorneweerd, Sridevi Kurella, Daniel M. Mueth, Matthew K. Runyon, Haojun Fu, Sergio O. Guevara
  • Publication number: 20120183947
    Abstract: The invention provides a method, apparatus and system for separating cellular components, and can be combined with holographic optical trapping manipulation or other forms of optical tweezing. One exemplary method includes providing a first flow having a plurality of components; providing a second flow; contacting the first flow with the second flow to provide a first separation region; and differentially sedimenting a first cellular component of the plurality of components into the second flow while concurrently maintaining a second cellular component of the plurality of components in the first flow. The second flow having the first cellular component is then differentially removed from the first flow having the second cellular component. Holographic optical traps may also be utilized in conjunction with the various flows to move selected components from one flow to another, as part of or in addition to a separation stage.
    Type: Application
    Filed: March 6, 2012
    Publication date: July 19, 2012
    Applicant: ARRYX, INC.
    Inventors: Daniel MUETH, Joseph PLEWA, Jessica SHIREMAN, Amy ANDERSON, Lewis GRUBER, Neil Harris ROSENBAUM
  • Patent number: 8169600
    Abstract: Methods and apparatus for analyzing surface properties of particles are provided. A method for analyzing the surface properties of the particle includes a associating a first particle with a first capture zone having a specific binding affinity for a first chemical species, applying an optical force to the first particle, sensing a response of the first particle to the optical force, and using the sensed response to determine the presence, absence or quantity of the first chemical species on the first particle surface. This process may be repeated in parallel to test multiple particles. In addition to directly testing the surface properties of the particles, the method can be used in direct, indirect and competitive assays to determine the presence, absence or quantity of free or immobilized analytes. A fluidic cartridge with capture zones having avidities that are tuned for the use of optical forces is provided. A software routine for performing the method is also provided.
    Type: Grant
    Filed: September 14, 2007
    Date of Patent: May 1, 2012
    Assignee: Arryx, Inc.
    Inventors: Christopher Knutson, Crystal Duke, Gary Stacey, Dan Mueth, Evan Tanner, Osman Akcakir, Haojun Fu, Robert Lancelot, Tania Chakrabarty, Kenneth Bradley
  • Patent number: 8158927
    Abstract: The invention provides a method, apparatus and system for separating blood and other types of cellular components, and can be combined with holographic optical trapping manipulation or other forms of optical tweezing. One of the exemplary methods includes providing a first flow having a plurality of blood components; providing a second flow; contacting the first flow with the second flow to provide a first separation region; and differentially sedimenting a first blood cellular component of the plurality of blood components into the second flow while concurrently maintaining a second blood cellular component of the plurality of blood components in the first flow. The second flow having the first blood cellular component is then differentially removed from the first flow having the second blood cellular component. Holographic optical traps may also be utilized in conjunction with the various flows to move selected components from one flow to another, as part of or in addition to a separation stage.
    Type: Grant
    Filed: March 2, 2010
    Date of Patent: April 17, 2012
    Assignee: Arryx, Inc.
    Inventors: Daniel Mueth, Joseph Plewa, Jessica Shireman, Amy Anderson, Lewis Gruber, Neil Harris Rosenbaum
  • Patent number: 8149416
    Abstract: The present invention utilizes a holographic optical forcing array for dynamic cellular probing and diagnostics. A holographic optical trapping system generates optical forces on objects so that deformations thereof may be quantified. In one embodiment, digital holography is used to generate an interference pattern, and an analysis thereof determines the phase profile which yields a measurement of the objects' shape deformation using only one image. In another embodiment, phase-stepped holography allows the phase profile of an object to be measured using only one image, by using a holographic optical element to make phase-shifted replicas of the beam in space. In another embodiment, the optical forcing array applies optical forces to beads placed on the objects' surface, deforming the objects. The beads' position is determined by applying Mie theory, and analysis thereof yields the three dimensional position of the beads, and a measurement of the deformation displacement on the objects' surface.
    Type: Grant
    Filed: October 30, 2008
    Date of Patent: April 3, 2012
    Assignee: Arryx, Inc.
    Inventor: Osman Akcakir
  • Publication number: 20120028848
    Abstract: The present invention relates to a method and apparatus of sorting objects including, providing a sample having wanted objects and unwanted objects; coating a surface of a sample holder with an antibody; placing an eluted sample on the sample holder; binding an antigen in the wanted objects with the antibody on the surface of the sample holder to sort the objects into wanted objects and unwanted objects; separating the wanted objects; and performing PCR-based STR analysis on the wanted objects. In one embodiment, holographic optical trapping is used to further sort the wanted objects. In other embodiments, the wanted objects are sperm and the antibody is a human sperm specific antibody, and the PCR is single cell PCR-based STR analysis. In still other embodiments, the binding is direct or indirect, ligands are used to bind to object-specific organomolecules, and protein A or protein G are used to bind the antibody.
    Type: Application
    Filed: October 5, 2011
    Publication date: February 2, 2012
    Applicant: ARRYX, INC.
    Inventor: Tania Chakrabarty
  • Patent number: 8067170
    Abstract: The present invention relates to a method and apparatus of sorting objects including, providing a sample having wanted objects and unwanted objects; coating a surface of a sample holder with an antibody; placing an eluted sample on the sample holder; binding an antigen in the wanted objects with the antibody on the surface of the sample holder to sort the objects into wanted objects and unwanted objects; separating the wanted objects; and performing PCR-based STR analysis on the wanted objects. In one embodiment, holographic optical trapping is used to further sort the wanted objects. In other embodiments, the wanted objects are sperm and the antibody is a human sperm specific antibody, and the PCR is single cell PCR-based STR analysis. In still other embodiments, the binding is direct or indirect, ligands are used to bind to object-specific organomolecules, and protein A or protein G are used to bind the antibody.
    Type: Grant
    Filed: September 11, 2008
    Date of Patent: November 29, 2011
    Assignee: Arryx, Inc.
    Inventor: Tania Chakrabarty
  • Publication number: 20110223653
    Abstract: The present invention relates to an apparatus and method of sorting objects and identifying the objects in a forensics sample, including using holographic optical trapping to sort objects from contaminants, and performing (single cell) PCR-based STR analysis on the objects to determine their identification. In addition, the chip used as a support for sorting the objects can also be used for performing single cell PCR-based STR analysis. In another embodiment, a microfluidics chip is used to stream the sample and sort the objects, before single cell PCR-based STR analysis is performed. The chip used for sorting utilizing HOT in the absence or presence of microfluidic streaming and sorting can also be the same as that used for the single cell PCR-based STR analysis.
    Type: Application
    Filed: May 18, 2011
    Publication date: September 15, 2011
    Applicant: ARRYX, INC.
    Inventor: Tania Chakrabarty
  • Patent number: 7998676
    Abstract: The present invention relates to an apparatus and method of sorting objects and identifying the objects in a forensics sample, including using holographic optical trapping to sort objects from contaminants, and performing (single cell) PCR-based STR analysis on the objects to determine their identification. In addition, the chip used as a support for sorting the objects can also be used for performing single cell PCR-based STR analysis. In another embodiment, a microfluidics chip is used to stream the sample and sort the objects, before single cell PCR-based STR analysis is performed. The chip used for sorting utilizing HOT in the absence or presence of microfluidic streaming and sorting can also be the same as that used for the single cell PCR-based STR analysis.
    Type: Grant
    Filed: September 11, 2008
    Date of Patent: August 16, 2011
    Assignee: Arryx, Inc.
    Inventor: Tania Chakrabarty
  • Publication number: 20110177547
    Abstract: A fluidic device includes an arrangement of channels for introducing a sample containing particles of interest into a processing chamber. The chamber is in fluid communication with collecting channels via low-flow connection channels. Particles in the sample may be observed and diverted from the processing chamber by application of a motive force such as optical trapping into a collection channel. Once in the collection channel, particles can be collected, including by trapping in a porous matrix.
    Type: Application
    Filed: January 14, 2011
    Publication date: July 21, 2011
    Applicant: ARRYX, INC.
    Inventors: Zheng Xia, Tania Chakrabarty, Haojun Fu, Dan Mueth
  • Publication number: 20110091932
    Abstract: An apparatus and method for purifying a forensic sample using an automated extraction and purification system includes optical tweezers; an input channel through which the sample is introduced; a chamber which receives the sample from the input channel; a collection channel through which selected particles of the sample are removed; and an output through which unselected particles of the sample are removed. At least one buffer input channel is provided. The input channel may allow sedimentation of the sample into the chamber by gravity. In another arrangement, the system includes an optical trapping system; a first channel through which the sample is introduced; a second channel through which buffer is introduced; wherein the optical tweezers are used to move selected particles of the sample from the first channel to the second channel. The selected particles may be sperm. The optical tweezers preferably utilize holographic optical trapping.
    Type: Application
    Filed: December 15, 2010
    Publication date: April 21, 2011
    Applicant: Arryx, Inc.
    Inventors: Joseph S. Plewa, Evan B. Tanner, Daniel M. Mueth, Crystal J. Duke, Kevin J. Ehrenreich
  • Patent number: 7875845
    Abstract: An apparatus and method for purifying a forensic sample using an automated extraction and purification system includes optical tweezers; an input channel through which the sample is introduced; a chamber which receives the sample from the input channel; a collection channel through which selected particles of the sample are removed; and an output through which unselected particles of the sample are removed. At least one buffer input channel is provided. The input channel may allow sedimentation of the sample into the chamber by gravity. In another arrangement, the system includes an optical trapping system; a first channel through which the sample is introduced; a second channel through which buffer is introduced; wherein the optical tweezers are used to move selected particles of the sample from the first channel to the second channel. The selected particles may be sperm. The optical tweezers preferably utilize holographic optical trapping.
    Type: Grant
    Filed: December 12, 2005
    Date of Patent: January 25, 2011
    Assignee: Arryx, Inc.
    Inventors: Joseph S. Plewa, Evan B. Tanner, Daniel M. Mueth, Crystal J. Duke, Kevin J. Ehrenreich
  • Publication number: 20100216208
    Abstract: The invention provides a method, apparatus and system for separating blood and other types of cellular components, and can be combined with holographic optical trapping manipulation or other forms of optical tweezing. One of the exemplary methods includes providing a first flow having a plurality of blood components; providing a second flow; contacting the first flow with the second flow to provide a first separation region; and differentially sedimenting a first blood cellular component of the plurality of blood components into the second flow while concurrently maintaining a second blood cellular component of the plurality of blood components in the first flow. The second flow having the first blood cellular component is then differentially removed from the first flow having the second blood cellular component. Holographic optical traps may also be utilized in conjunction with the various flows to move selected components from one flow to another, as part of or in addition to a separation stage.
    Type: Application
    Filed: March 2, 2010
    Publication date: August 26, 2010
    Applicant: ARRYX, INC.
    Inventors: Daniel Mueth, Joseph Plewa, Jessica Shireman, Amy Anderson, Lewis Gruber, Neil Harris Rosenbaum
  • Patent number: 7704395
    Abstract: The invention provides a method and apparatus for separating blood into components, may be expanded to include other types of cellular components, and can be combined with holographic optical manipulation or other forms of optical tweezing. One of the exemplary methods includes providing a first flow having a plurality of blood components; providing a second flow; contacting the first flow with the second flow to provide a first separation region; and differentially sedimenting a first blood cellular component of the plurality of blood components into the second flow while concurrently maintaining a second blood cellular component of the plurality of blood components in the first flow. The second flow having the first blood cellular component is then differentially removed from the first flow having the second blood cellular component.
    Type: Grant
    Filed: November 8, 2006
    Date of Patent: April 27, 2010
    Assignee: Arryx, Inc.
    Inventors: Daniel Mueth, Amy Anderson, Jessica Shireman