Patents Examined by David Steadman
  • Patent number: 12152264
    Abstract: Disclosed are a phosphinothricin dehydrogenase mutant, a recombinant bacterium and a one-pot multi-enzyme synchronous directed evolution method. The phosphinothricin dehydrogenase mutant, with an amino acid sequence as shown in SEQ ID No.1, is obtained by mutating alanine at position 164 to glycine, arginine at position 205 to lysine, and threonine at position 332 to alanine in a phosphinothricin dehydrogenase derived from Pseudomonas fluorescens. The recombinant bacterium is obtained by introducing a gene encoding the phosphinothricin dehydrogenase mutant into a host cell. The host cell can also incorporate a gene encoding a glucose dehydrogenase or a gene encoding a formate dehydrogenase to undergo synchronous directed evolution to achieve double gene overexpression. The one-pot multi-enzyme synchronous directed evolution method of the present invention can screen recombinant bacteria with greatly improved activity.
    Type: Grant
    Filed: December 26, 2020
    Date of Patent: November 26, 2024
    Assignee: ZHEJIANG UNIVERSITY OF TECHNOLOGY
    Inventors: Yaping Xue, Feng Cheng, Jumou Li, Qinghua Li, Yuguo Zheng, Shuping Zou, Jianmiao Xu
  • Patent number: 12134634
    Abstract: This invention provides the nucleic acid molecules encoding novel small monomeric near-infrared fluorescent protein miRFP670nano, variants and derivatives thereof as well as proteins and peptides encoded by these nucleic acids. The invention also relates to derivatives, homologues, or mutants of the specific proteins referenced above as well as fragments of the nucleic acids and the peptides encoded thereby. The invention further relates to host-cells, stable cell lines and transgenic organisms comprising above-referenced nucleic acid molecules. The present invention also refers to methods of making and using small monomeric near-infrared fluorescent proteins derived from cyanobacteriochromes. The presented protein and its derivatives find use in a variety of applications and approaches, including labeling of biomolecules, cells or cell organelles, detecting protein-protein interactions, and generation of genetically encoded fluorescent biosensors.
    Type: Grant
    Filed: December 8, 2020
    Date of Patent: November 5, 2024
    Inventors: Vladislav V. Verkhusha, Olena S. Oliinyk
  • Patent number: 12129497
    Abstract: The present invention relates to polypeptides, nucleotides encoding the polypeptide, as well as methods of producing the polypeptides. The present invention also relates to detergent compositions comprising polypeptides, a laundering method and the use of polypeptides.
    Type: Grant
    Filed: November 8, 2022
    Date of Patent: October 29, 2024
    Assignee: Novozymes A/S
    Inventors: Morten Gjermansen, Klaus Gori, Henrik Marcus Geertz-Hansen, Jesper Salomon, Thomas Holberg Blicher, Nikolaj Spodsberg
  • Patent number: 12129465
    Abstract: Provided herein are compositions and methods comprising mutated coronavirus “S” spike proteins or receptor binding domains thereof that have an increased expression level, yield and stability compared to its corresponding native or wild-type coronavirus spike protein under the same expression, culture or storage conditions. These mutated spike proteins can be used for generating a protein-based vaccine against one or more coronaviruses.
    Type: Grant
    Filed: December 28, 2021
    Date of Patent: October 29, 2024
    Assignees: UNIVERSITY OF WASHINGTON, FRED HUTCHINSON RESEARCH CENTER
    Inventors: Daniel Ellis, Neil King, Jesse Bloom, Tyler Starr, Allison Greaney
  • Patent number: 12123041
    Abstract: A method or producing amino sugar (containing) products using metabolically engineered microorganisms is disclosed, wherein the conversion of UDP-N-acetylglucosamine to cell envelope precursors and molecules is reduced by altering the activity of enzymes involved in the synthesis of cell envelope precursors and molecules.
    Type: Grant
    Filed: September 20, 2019
    Date of Patent: October 22, 2024
    Assignee: Universiteit Gent
    Inventors: Jo Maertens, David Bauwens, Wouter Van Bellegem, Pieter Coussement, Dries Duchi, Marjan De Mey
  • Patent number: 12098410
    Abstract: Recombinant Zymomonas mobilis for producing ethylene glycol, method and uses thereof are provided. The recombinant Zymomonas mobilis carries and expresses genes related to a synthesis pathway of xylonic acid and genes related to a synthesis pathway of ethylene glycol.
    Type: Grant
    Filed: December 31, 2023
    Date of Patent: September 24, 2024
    Assignee: Hubei University
    Inventors: Shihui Yang, Xiongying Yan, Mian Li, Xia Wang, Qiaoning He
  • Patent number: 12091652
    Abstract: This disclosure provides, inter alia, an optimized strain of Nitrosomonas eutropha (N. eutropha) designated D23, D23-100, or AOB D23-100. N. eutropha bacteria disclosed in this application have desirable properties, e.g., optimized properties, such as the ability to suppress growth of pathogenic bacteria, and an enhanced ability to produce nitric oxide and nitric oxide precursors. The N. eutropha herein may be used, for instance, to treat diseases associated with low nitrite levels, skin diseases, and diseases caused by pathogenic bacteria.
    Type: Grant
    Filed: November 23, 2020
    Date of Patent: September 17, 2024
    Assignee: AOBIOME LLC
    Inventors: David R. Whitlock, Spiros Jamas, Larry Weiss, Ioannis Gryllos
  • Patent number: 12060542
    Abstract: The present invention relates to compositions such as cleaning compositions comprising enzymes. The invention further relates to the use of the compositions comprising such enzymes in cleaning processes.
    Type: Grant
    Filed: July 6, 2023
    Date of Patent: August 13, 2024
    Assignee: Novozymes A/S
    Inventors: Rebecca Munk Vejborg, Dorotea Raventos Segura, Jesper Salomon, Johanne M. Jensen, Rune Nygaard Monrad, Anne Vindum Due, Martin Gudmand
  • Patent number: 12043851
    Abstract: Disclosed are DNA polymerases having improved ability to incorporate methylated-dNTPs, relative to a corresponding, unmodified polymerase. The polymerases are useful in a variety of disclosed primer extension methods. Also disclosed are related compositions, including recombinant nucleic acids, vectors, and host cells, which are useful, e.g., for production of the DNA polymerases. Further disclosed are kits and reaction mixtures comprising the improved DNA polymerases as well as methods of primer extension using the improved DNA polymerases.
    Type: Grant
    Filed: March 21, 2019
    Date of Patent: July 23, 2024
    Assignee: Roche Molecular Systems, Inc.
    Inventors: Keith A. Bauer, Barbara Eckert
  • Patent number: 12037609
    Abstract: The present disclosure relates to biological processes and systems for the production of isopropanol and/or acetone utilizing modified alcohol dehydrogenases that exhibit increased activity with NADH as a cofactor. The disclosure further relates to polynucleotides and polypeptides of the modified alcohol dehydrogenases, and host cells containing the polynucleotides and expressing the polypeptides.
    Type: Grant
    Filed: December 20, 2022
    Date of Patent: July 16, 2024
    Assignee: Braskem S.A.
    Inventors: Verônica Leite Queiroz, Lucas Pedersen Parizzi, Iuri Estrada Gouvea, Debora Noma Okamoto, Rafael Victório Carvalho Guido, Alessandro Silva Nascimento, Igor Polikarpov
  • Patent number: 12018235
    Abstract: The present invention relates to mannanase variants. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.
    Type: Grant
    Filed: April 26, 2018
    Date of Patent: June 25, 2024
    Assignee: Novozymes A/S
    Inventors: Vivek Srivastava, Markus Klinger, Rakhi Saikia, Vijaya Shankar Nataraj, Sohel Dalal, Jens Erik Nielsen
  • Patent number: 11999957
    Abstract: A method of enhancing vanillin resistance of Saccharomyces cerevisiae, including: knocking out SNG1 gene from a genome of Saccharomyces cerevisiae. This application further provides a mutant of SNG1 gene of Saccharomyces cerevisiae including the nucleotide sequence shown in SEQ ID NO: 1, where the sequence shown in SEQ ID NO: 1, from left to right, consists of a ?18˜+203 bp fragment of SNG1 gene of Saccharomyces cerevisiae, a nucleotide fragment of loxp-KanMX4-loxp and a +1446˜+1644 bp fragment of the SNG1 gene of Saccharomyces cerevisiae.
    Type: Grant
    Filed: December 10, 2020
    Date of Patent: June 4, 2024
    Assignee: QILU UNIVERSITY OF TECHNOLOGY
    Inventors: Xiaoming Bao, Liyun Song, Xinning Wang, Wenyan Cao, Weiquan Zhao, Zailu Li
  • Patent number: 11987826
    Abstract: The present invention provides a nitrilase mutant protein with increased thermal stability and its application in the synthesis of an anti-epileptic drug intermediate, wherein the mutant is obtained by mutating one or two of the amino acids at position 151, 223 and 250 of the amino acid sequence shown in SEQ ID No. 2. the thermal stability of the nitrilase mutant AcN-T151V/C223A/C250G was increased by up to 1.73 folds. The yield of the final product was up to 95% using the recombinant Escherichia coli containing the nitrilase mutant to hydrolyze 1M 1-cyanocyclohexylacetonitrile to produce 1-cyanocyclohexyl acetic acid at 35° C. And the yield of the final product was up to 97% when hydrolyzing 1.2M 1-cyanocyclohexylacetonitrile at 35° C. The final yield was up to 80% when using the nitrilase mutants obtained by the present invention to synthesize gabapentin.
    Type: Grant
    Filed: December 11, 2020
    Date of Patent: May 21, 2024
    Assignee: ZHEJIANG UNIVERSITY OF TECHNOLOGY
    Inventors: Yaping Xue, Neng Xiong, Peijin Lv, Yuguo Zheng
  • Patent number: 11980207
    Abstract: Provided are methods for producing food products comprising recombinant components, and compositions used in and food products produced by such methods.
    Type: Grant
    Filed: April 23, 2021
    Date of Patent: May 14, 2024
    Assignee: Perfect Day, Inc.
    Inventors: Timothy Geistlinger, Heather Jensen, Ravirajsinh Jhala, Hendrik Meerman, Balakrishnan Ramesh, Ty Wagoner, Timothy Scott Johnson, Vincent Wei-Xiang Wu, Francesca Manea
  • Patent number: 11970725
    Abstract: Provided herein are E. coli host strains with improved capacity for producing recombinant proteins.
    Type: Grant
    Filed: April 12, 2023
    Date of Patent: April 30, 2024
    Assignee: Scarab Genomics LLC
    Inventors: Frederick R. Blattner, Robert E. Novy, David A. Frisch, Charles Landry, Hyunsic Choi, Eric A. Steffen, John Brandon
  • Patent number: 11965202
    Abstract: A method for making 2-oxygenated decalins, and products thereof.
    Type: Grant
    Filed: February 26, 2020
    Date of Patent: April 23, 2024
    Assignee: GIVAUDAN SA
    Inventors: Felix Flachsmann, Eric Eichhorn
  • Patent number: 11959109
    Abstract: A horseshoe crab Factor C protein having activity of Factor C, wherein the horseshoe crab is selected from Tachypleus tridentatus, Limulus polyphemus, and Carcinoscorpius rotundicauda, and wherein the horseshoe crab Factor C protein is produced through being recombinantly expressed from a Chinese Hamster Ovary (CHO) DG44 cell or HEK cell.
    Type: Grant
    Filed: July 3, 2023
    Date of Patent: April 16, 2024
    Assignee: SEIKAGAKU CORPORATION
    Inventors: Hikaru Mizumura, Toshio Oda, Shun-ichiro Kawabata
  • Patent number: 11952608
    Abstract: The present invention relates to methods for producing oxygenated terpenoids. Polynucleotides, derivative enzymes, and host cells for use in such methods are also provided.
    Type: Grant
    Filed: January 5, 2021
    Date of Patent: April 9, 2024
    Assignee: Manus Bio Inc.
    Inventors: Ajikumar Parayil Kumaran, Chin Giaw Lim, Liwei Li, Souvik Ghosh, Christopher Pirie, Anthony Qualley
  • Patent number: 11932845
    Abstract: The invention provides non-naturally occurring microbial organisms having a 4-hydroxybutyrate, 1,4-butanediol, or other product pathway and being capable of producing 4-hydroxybutyrate, 1,4-butanediol, or other product, wherein the microbial organism comprises one or more genetic modifications. The invention additionally provides methods of producing 4-hydroxybutyrate, 1,4-butanediol, or other product or related products using the microbial organisms.
    Type: Grant
    Filed: June 3, 2013
    Date of Patent: March 19, 2024
    Assignee: Genomatica, Inc.
    Inventors: Priti Pharkya, Anthony P. Burgard, Stephen J. Van Dien, Robin E. Osterhout, Mark J. Burk, John D. Trawick, Michael P. Kuchinskas, Brian Steer
  • Patent number: 11905523
    Abstract: Provided herein are gene therapy compositions and methods for treating, preventing, and/or curing NPC1. More specifically, the disclosure provides Adeno-associated virus (AAV) vectors for delivery of nucleic acids and nucleic acids (including AAV transfer cassettes) for treating, preventing, and/or curing NPC1.
    Type: Grant
    Filed: October 16, 2020
    Date of Patent: February 20, 2024
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Daniel McCoy, Garrett E. Berry, David Dismuke