Patents Examined by David Steadman
  • Patent number: 11932845
    Abstract: The invention provides non-naturally occurring microbial organisms having a 4-hydroxybutyrate, 1,4-butanediol, or other product pathway and being capable of producing 4-hydroxybutyrate, 1,4-butanediol, or other product, wherein the microbial organism comprises one or more genetic modifications. The invention additionally provides methods of producing 4-hydroxybutyrate, 1,4-butanediol, or other product or related products using the microbial organisms.
    Type: Grant
    Filed: June 3, 2013
    Date of Patent: March 19, 2024
    Assignee: Genomatica, Inc.
    Inventors: Priti Pharkya, Anthony P. Burgard, Stephen J. Van Dien, Robin E. Osterhout, Mark J. Burk, John D. Trawick, Michael P. Kuchinskas, Brian Steer
  • Patent number: 11905523
    Abstract: Provided herein are gene therapy compositions and methods for treating, preventing, and/or curing NPC1. More specifically, the disclosure provides Adeno-associated virus (AAV) vectors for delivery of nucleic acids and nucleic acids (including AAV transfer cassettes) for treating, preventing, and/or curing NPC1.
    Type: Grant
    Filed: October 16, 2020
    Date of Patent: February 20, 2024
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Daniel McCoy, Garrett E. Berry, David Dismuke
  • Patent number: 11879101
    Abstract: The present disclosure relates to the technical field of application of bioengineering technology in microbial oil recovery, and discloses a Brevibacillus agri strain and preparation thereof and a method for preparing surfactant, and use thereof. The Brevibacillus agri strain is deposited in the China General Microbiological Culture Collection Center under the accession number CGMCC No. 9983. The Brevibacillus agri and its preparation may effectively enhance the crude oil recovery; the method for preparing the surfactant allow the lipopeptide biosurfactant to have good physical properties, effectively reduce the surface tension, and have good emulsifying performance for petroleum, various hydrocarbons and lipids.
    Type: Grant
    Filed: May 11, 2021
    Date of Patent: January 23, 2024
    Assignee: Yangtze University
    Inventors: Yuehui She, Fan Zhang, Zhi Zhang, Puyong Yao, Fei Li, Hao Dong, Shanshan Sun, Gaoming Yu, Shaojin Yi, Wenda Zhang, Linqi Hu, Yangyang Feng, Anying Zheng, Yang Li
  • Patent number: 11873516
    Abstract: Provided herein are engineered DNA polymerases comprising modifications improving accuracy and processivity of the polymerase including modifications in the Motif A region, optionally, along with additional modifications in the palm and/or exonuclease domains of the polymerase. Also provided are nucleic acids encoding the engineered DNA polymerases comprising modifications in motif A of the polymerase, optionally, with additional modifications. Methods, vectors, kits, and compositions comprising the nucleic acids and compositions, methods and kits comprising the engineered polymerases are also provided.
    Type: Grant
    Filed: February 8, 2022
    Date of Patent: January 16, 2024
    Assignee: PACIFIC BIOSCIENCES OF CALIFORNIA, INC.
    Inventors: Pinar Iyidogan, Mariam Iftikhar, Bridget Kidd, Lewis Churchfield
  • Patent number: 11859224
    Abstract: The disclosure provides methods of manufacturing products comprising allulose produced by contacting a protein having allulose 3-epimerase activity with a fructose substrate under conditions such that the fructose substrate is converted into allulose. The disclosure also provides methods of manufacturing products comprising allulose produced by providing a vector comprising a nucleic acid molecule having a polynucleotide sequence encoding a protein having allulose 3-epimerase activity.
    Type: Grant
    Filed: December 31, 2020
    Date of Patent: January 2, 2024
    Assignee: Tate & Lyle Solutions USA LLC
    Inventors: Ryan David Woodyer, Richard W. Armentrout
  • Patent number: 11851692
    Abstract: Disclosed are an antimycin compound and a preparation method and use thereof. The preparation method comprises: fermenting a marine actinomycete (Streptomyces sp.4-7) with a preservation number CCTCCNO: M2020953 to obtain a fermented product and soaking and extracting the fermented product with ethyl acetate to obtain a crude extract; and carrying out separation and purification by normal-phase silica gel column chromatography, reversed-phase MPLC, and semi-preparative reversed-phase high-performance liquid chromatography. The invention has the advantages of resistance against Botrytis cinerea and Penicillium citrinum.
    Type: Grant
    Filed: March 29, 2023
    Date of Patent: December 26, 2023
    Assignee: NINGBO UNIVERSITY
    Inventors: Lijian Ding, Shan He, Wenhao Li, Weiyan Zhang, Yingying Wei
  • Patent number: 11845953
    Abstract: Provided is a method for altering a targeted site of a DNA in a cell, including a step of stimulating the cell with a factor inducing a DNA modifying enzyme endogenous to the cell, and bringing a complex of a nucleic acid sequence-recognizing module specifically binding to a target nucleotide sequence in a given DNA and a DNA modifying enzyme-binding module bonded to each other into contact with the DNA to convert one or more nucleotides in the targeted site to other one or more nucleotides or delete one or more nucleotides, or insert one or more nucleotides into the targeted site.
    Type: Grant
    Filed: March 20, 2018
    Date of Patent: December 19, 2023
    Assignee: NATIONAL UNIVERSITY CORPORATION KOBE UNIVERSITY
    Inventors: Keiji Nishida, Akihiko Kondo, Takayuki Arazoe, Shin Yoshioka
  • Patent number: 11821021
    Abstract: Yeast cells having a reductive TCA pathway from pyruvate or phosphoenolpyruvate to succinate, and which include at least one exogenous gene overexpressing an enzyme in that pathway, further contain an exogenous transhydrogenase gene.
    Type: Grant
    Filed: June 15, 2021
    Date of Patent: November 21, 2023
    Assignee: CARGILL, INCORPORATED
    Inventors: Arlene M. Fosmer, Vernon L. McIntosh, Jr., Thomas W. McMullin, Gregory M. Poynter, Brian J. Rush, Kevin T. Watts
  • Patent number: 11807874
    Abstract: The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity over a wide range of substrates.
    Type: Grant
    Filed: February 15, 2022
    Date of Patent: November 7, 2023
    Assignee: Codexis, Inc.
    Inventors: Robert Osborne, Vesna Mitchell, Khin Yu Naing Htwe, Xiyun Zhang, Erika M. Milczek, Jeffrey C. Moore
  • Patent number: 11806388
    Abstract: The invention provides an animal feed composition comprising microbial ?-amylase. The invention further provides methods of increasing the growth (weight gain), the average daily weight gain or the efficiency of feed utilization by an animal or reducing the number of days needed to achieve a desired weight in an animal, comprising feeding to the animal an animal feed composition of the present invention.
    Type: Grant
    Filed: October 27, 2020
    Date of Patent: November 7, 2023
    Inventors: David Witherspoon, Tammiraj Kumar Iragavarapu
  • Patent number: 11802297
    Abstract: The present invention relates to an improved method for cell line development (CLD) which is generally applicable to production of any therapeutic protein that can be produced using mammalian Cell lines and in particular Chinese Hamster Ovary (CHO) cells. The method combines site-directed integration (SDI), expression construct components improving the post-transcriptional processing of the gene of interest (GOI) and the introduction of a onetime pre-CLD host cell line selection workflow to generate a production competent cell line that can then be used in multiple CLD efforts using SDI from that point on.
    Type: Grant
    Filed: February 23, 2018
    Date of Patent: October 31, 2023
    Assignee: Cytiva Sweden AB
    Inventors: Daniel Ivansson, Andreas Castan
  • Patent number: 11802274
    Abstract: The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.
    Type: Grant
    Filed: May 6, 2022
    Date of Patent: October 31, 2023
    Assignee: Codexis, Inc.
    Inventors: Oscar Alvizo, Melissa Ann Mayo, Jeffrey C. Moore
  • Patent number: 11802280
    Abstract: An enzyme synthesizes hydroxyl acetaldehyde and/or 1,3-dihydroxyacetone by catalyzing formaldehyde. Site-directed mutation of benzoylformate decarboxylase (BFD) creates a mutant of the enzyme, which can polymerize the formaldehyde, A phosphoketalose (F/XPK) generates acetyl phosphoric acid from the hydroxyl acetaldehyde or 1,3-dihydroxyacetone (DHA). Combination with phosphotransacetylase (Pta) provides a route from the formaldehyde to acetyl coenzyme A in three steps.
    Type: Grant
    Filed: February 12, 2018
    Date of Patent: October 31, 2023
    Assignee: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences
    Inventors: Huifeng Jiang, Xiaoyun Lu, Yuwan Liu, Yiqun Yang, Lina Lu, Sheng Yang, Junran Gou
  • Patent number: 11788113
    Abstract: Direct detection of mutagenesis in prokaryotes by reversion of an inactivating mutation (reversion mutation assay), producing a quantitative signal for in vivo mutagenesis, may greatly reduce the amount of test chemicals and labor involved in these assays. Further, transcriptional coupling of ?-lactamase reversion and GFP, translational fusion between ?-lactamase and GFP with stop codon in GFP, and a novel dual reporter to monitor continuous mutagenesis may be used in methods described herein.
    Type: Grant
    Filed: April 25, 2022
    Date of Patent: October 17, 2023
    Assignee: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: Manel Camps, Jennifer Allen
  • Patent number: 11781121
    Abstract: The present invention relates a variant polypeptide having geranylgeranyl pyrophosphate synthase activity, which variant polypeptide comprises an amino acid sequence which, when aligned with a geranylgeranyl pyrophosphate synthase comprising the sequence set out in SEQ ID NO: 1, comprises at least one substitution of an amino acid residue corresponding to any of amino acids at positions 92, 100 or 235 said positions being defined with reference to SEQ ID NO: 1 and wherein the variant has one or more modified properties as compared with a reference polypeptide having geranylgeranyl pyrophosphate synthase activity. A variant polypeptide of the invention may be used in a recombinant host for the production of steviol or a steviol glycoside.
    Type: Grant
    Filed: December 3, 2021
    Date of Patent: October 10, 2023
    Assignee: DSM IP ASSETS B.V.
    Inventors: Viktor Marius Boer, Priscilla Zwartjens, Johannes Gustaaf Ernst Van Leeuwen
  • Patent number: 11773414
    Abstract: The present application relates to a method of producing drimenol and/or drimenol derivatives by comprising contacting at least one polypeptide with farnesyl diphosphate (FPP). The method may be performed in vitro or in vivo. Also provided are amino acid sequences of polypeptides useful in the methods and nucleic acids encoding the polypeptides described. The method further provides host cells or organisms genetically modified to express the polypeptides and useful to produce drimenol and/or derivatives of drimenol.
    Type: Grant
    Filed: August 20, 2021
    Date of Patent: October 3, 2023
    Assignee: FIRMENICH SA
    Inventors: Pan Li, Qi Wang, Xiu-Feng He, Olivier Haefliger
  • Patent number: 11773415
    Abstract: The present invention provides a method for efficiently producing ethanol from a lignocellulosic raw material. More specifically, the present invention provides a method for producing ethanol from a lignocellulosic raw material, which comprises a step of performing multiple parallel fermentation while continuously or intermittently adding an additional saccharification enzyme to a fermentation liquid comprising a lignocellulosic raw material, a saccharification enzyme and a yeast so that the physical property value of the fermentation liquid itself is maintained within a preset range.
    Type: Grant
    Filed: September 10, 2019
    Date of Patent: October 3, 2023
    Assignees: ENEOS Corporation, Oji Holdings Corporation
    Inventors: Yuichi Takahashi, Kohei Ide, Masahiro Niwa, Miyuki Kanezawa, Shoichi Ikemizu, Atsushi Furujo, Naoya Azumi, Akira Tsukamoto, Shingo Sekizawa
  • Patent number: 11767492
    Abstract: The present invention relates to compositions such as cleaning compositions comprising enzymes. The invention further relates, use of compositions comprising such enzymes in cleaning processes.
    Type: Grant
    Filed: October 31, 2018
    Date of Patent: September 26, 2023
    Assignee: Novozymes A/S
    Inventors: Rebecca Munk Vejborg, Dorotea Raventos Segura, Jesper Salomon, Johanne M. Jensen, Rune Nygaard Monrad, Anne Vindum Due, Martin Gudmand
  • Patent number: 11739305
    Abstract: ?2-6-Sialyltransferase (2,6ST) variants having improved ?2-6-specific sialidase activity as compared to the native 2,6ST enzymes are described. The variants include GT80 sialyltransferases such as P. damselae Pd2,6ST. Methods for making de-sialylated products and screening sialidase activity are also described.
    Type: Grant
    Filed: December 21, 2018
    Date of Patent: August 29, 2023
    Assignee: The Regents of the University of California
    Inventors: Xi Chen, John B. McArthur, Andrew J. Fisher
  • Patent number: 11725118
    Abstract: Described is a method for the preparation of a gelatin hydrolysate having a decreased endotoxin content, comprising the steps of incubating a solution of gelatin of gelatin hydrolysate at a temperature of 70-125° C. at a pH of 3.5 or less for a time period of at least 15 minutes, and recovering the gelatin hydrolysate. Further a gelatin hydrolysate thus obtained is described.
    Type: Grant
    Filed: November 22, 2018
    Date of Patent: August 15, 2023
    Assignee: Rousselot BVBA
    Inventors: Joseph Hubertus Olijve, Eline Bakhuizen, Paul Stevens