Patents Examined by Jeffrey Fredman
  • Patent number: 6806049
    Abstract: In gene expression frequency analysis, a vector primer to which each cDNA is ligated is formed by synthesizing the cDNA from each mRNA using by a vector primer having a poly(T) sequence; each cDNA sequence is converted to a tag on the vector primer; a concatemer is formed by ligating the obtained tags via a sequence that enables recognition of ends of the tags; and the nucleotide sequence of the concatemer is analyzed.
    Type: Grant
    Filed: August 16, 2001
    Date of Patent: October 19, 2004
    Assignee: Ajinomoto Co., Inc.
    Inventors: Takami Maekawa, Akira Mitsui, Masayo Date, Hisao Fukuda, Yoshiyuki Takahara
  • Patent number: 6806047
    Abstract: Methods and compounds are provided for detecting target molecules in a sample using specific binding assays. In particular, methods are provided for detecting a nucleic acid target in a sample. In one embodiment, the method comprises hybridizing a nucleic acid target, comprising a target nucleic acid sequence, to a nucleic acid probe, comprising a probe nucleic acid sequence, wherein the target comprises a binding ligand. The hydridized target is contacted with a receptor comprising multiple sites capable of binding the binding ligand to complex the receptor to the binding ligand, and the receptor is contacted with an amplification reagent, comprising a plurality of the binding ligands, to complex the amplification reagent to the receptor. The presence of the complexed amplification reagent then is detected, for example, by detecting the presence of a detectable label, such as a fluorescent label, for example, on the receptor or the amplification reagent.
    Type: Grant
    Filed: February 6, 2001
    Date of Patent: October 19, 2004
    Assignee: Affymetrix, Inc.
    Inventors: Martin J. Goldberg, Govinda Rao S. Yelagalawadi, Eugene Yuji Tanimoto, Huu Minh Tran, Helin Dong, David Lockhart, Thomas B. Ryder, Janet A. Warrington, Jody Beecher
  • Patent number: 6803211
    Abstract: The present invention relates to polynucleotides associated with angiogenesis-related disorders. The present invention also relates to canine endostatin genes, novel genes associated with angiogenesis-related disorders, such as cancer. The invention encompasses endostatin nucleic acids, recombinant DNA molecules, cloned genes or degenerate variants thereof, endostatin gene products and antibodies directed against such gene products, cloning vectors containing mammalian endostatin gene molecules, and hosts that have been genetically engineered to express such molecules. The invention further relates to methods for the identification of compounds that modulate the expression of endostatin genes and gene products and to using such compounds as therapeutic agents in the treatment of angiogenesis-related disorders, e.g., cancer. The invention also relates to methods for the diagnostic evaluation, genetic testing and prognosis of angiogenesis-related disorders, e.g.
    Type: Grant
    Filed: August 24, 2001
    Date of Patent: October 12, 2004
    Assignees: Pfizer Inc., Pfizer Products Inc.
    Inventors: Xiao Tong, Michael G. Sheppard
  • Patent number: 6803187
    Abstract: The present invention relates to a method for the rapid and reliable detection of drug-selected mutations in the HIV protease gene allowing the simultaneous charaterization of a range of codons involved in drug resistance using specific sets of probes optimized to function together in a reverse-hybridization assay.
    Type: Grant
    Filed: June 25, 2001
    Date of Patent: October 12, 2004
    Assignee: Innogenetics N.V.
    Inventor: Lieven Stuyver
  • Patent number: 6803190
    Abstract: Genetic markers in the Porcine melanocortin-4 receptor (MC4R) gene are disclosed which are associated with fat content, growth rate, and feed consumption. Further, novel sequence data from regions of the gene are disclosed which may be used in a PCR test to screen for the presence of the marker. The genetic marker may be used to screen animals for breeding purposes which have the desired traits regarding fat content, growth rate, and feed consumption. Kits which take advantage of the PCR test are also disclosed.
    Type: Grant
    Filed: July 24, 2000
    Date of Patent: October 12, 2004
    Assignee: Iowa State University Research Foundation, Inc.
    Inventors: Max F. Rothschild, Kwan Suk Kim, Niels J. Larson
  • Patent number: 6800298
    Abstract: Fluid compositions and methods for lubrication of mammalian joints are disclosed, including both natural and artificial fluids. Synovial fluid acts to lubricate the bearing surfaces of bones and bone-like structures which are held in frictional contact within biological joints. Such fluids may be used to treat arthritic, injured, and diseased joints. Synovial fluid containing a dextran-based hydrogel with lipids provides enhanced rheological and tribological properties of such a fluid. Phospholipids are particularly useful in dextran-based compositions for synovial fluid. One phospholipid that can be used advantageously in synovial fluid is dipalmitoyl phosphatidylcholine (DPPC).
    Type: Grant
    Filed: May 11, 2000
    Date of Patent: October 5, 2004
    Assignee: Clemson University
    Inventors: Julie-Anne Mason Burdick, Martine Laberge, Gary Lickfield
  • Patent number: 6800453
    Abstract: Arrays of polypeptides are generated by translation of nucleic acid sequences encoding the polypeptides at a plurality of addresses on the array.
    Type: Grant
    Filed: January 22, 2002
    Date of Patent: October 5, 2004
    Assignee: President and Fellows of Harvard College
    Inventors: Joshua Labaer, Albert Lau
  • Patent number: 6797464
    Abstract: The invention relates to methods of detecting a drug resistant HIV in a subject. The methods include detecting mutations associated with drug resistance in an HIV 2-LTR circle DNA molecule obtained from a cell of an HIV-positive subject, e.g, an HIV-1-positive human.
    Type: Grant
    Filed: July 10, 2002
    Date of Patent: September 28, 2004
    Assignee: University of Massachusetts
    Inventors: Mario Stevenson, Mark Sharkey
  • Patent number: 6797473
    Abstract: The invention features methods and reagents useful for the treatment of excessive or insufficient apoptosis in cells, and, particularly, in germ-line cells. The invention is useful in treating testicular cancers, cancers of germ-line cells, cancers in non-germ-line cell tissues, infertility (e.g., male infertility), and for birth control (e.g., male birth control).
    Type: Grant
    Filed: December 18, 2001
    Date of Patent: September 28, 2004
    Assignee: University of Ottawa
    Inventors: Robert G. Korneluk, Mark Lagacé
  • Patent number: 6794139
    Abstract: A pharmaceutical composition is disclosed, as well as its use in tumour diagnosis, therapy and prevention, methods for diagnosing, treating and preventing tumours, and antibodies and their use.
    Type: Grant
    Filed: October 24, 2001
    Date of Patent: September 21, 2004
    Assignee: Roche Diagnostics GmbH
    Inventors: Sabine Schiemann, Ulrich Weidle
  • Patent number: 6790618
    Abstract: A method is provided for determining the susceptibility of a NIDDM patient towards sulfonylurea therapy by obtaining a sample from a NIDDM patient where the sample includes nucleic acid molecules containing a fragment of the SUR1 gene comprising the nucleotide in position −3 of exon 16 and detecting the presence or absence of the −3 t allele in position −3 of exon 6 whereby the presence of at least one −3 t allele identifies a NIDDM patient with a high susceptibility towards sulfonylurea therapy.
    Type: Grant
    Filed: October 19, 2001
    Date of Patent: September 14, 2004
    Assignees: Institut Pasteur de Lille, Institut National de la Sante et de la Recherche Medicale (Inserm)
    Inventors: Philippe Amouyel, Nicole Helbecque, Aline Meirhaeghe
  • Patent number: 6790638
    Abstract: The invention concerns a method for selecting tumours expressing HLA-G, sensitive to an anticancer treatment, which inhibits or prevents the HLA-G activity of said tumours and the uses thereof. Said method enable to establish either the HLA-G, transcription profile of a solid tumour or the HLA-G expression profile of a solid tumour. The method for establishing the HLA-G transcription profile consists in: (i) drawing a tumoral sample; (ii) extracting the mRNA; (iii) reverse transcription (RT) of said RNA: (iv) successive or simultaneous amplification of the cDNA's obtained in (iii) in the presence of primers specific to each HLA-G isoform and analysing the resulting amplification products, by electrophoresis and/or specific hybridisation and (v) establishing said sample HLA-G transcription profile.
    Type: Grant
    Filed: October 13, 2000
    Date of Patent: September 14, 2004
    Assignee: Commissariat a l'Energie Atomique
    Inventors: Edgardo Delfino Carosella, Jean Dausset, Philippe Moreau, Pascale Paul, Nathalie Rouas-Freiss
  • Patent number: 6790621
    Abstract: This invention provides the identification of a truncation polymorphism of the mdr1 gene that is linked to ivermectin sensitivity in subjects, such as collies. Also provided are methods for detecting drug transport sensitivity in a subject, and animal models and in vitro cell systems using cells from animals having an mdr1 truncation.
    Type: Grant
    Filed: January 10, 2002
    Date of Patent: September 14, 2004
    Assignee: Washington State University Research Foundation
    Inventors: Katrina L. Mealey, Steven A. Bentjen
  • Patent number: 6790637
    Abstract: The present invention is broadly directed to therapeutic molecules capable of inter alia modulating apoptosis in mammalian cells. The therapeutic molecules of the present invention encompass genetic sequences and chemical entities capable of regulating expression of a novel mammalian gene belonging to the bcl-2 family and which promotes cell survival. The therapeutic molecules of the present invention may have further utility in delaying cell cycle entry. In addition, the present invention extends to chemical entities capable of modulating activity and function of the translation product of said novel gene of the bcl-2 family. The present invention also extends to the translation product of the novel gene of the bcl-2 family and its use in, for example, therapy, diagnosis, antibody generation and as a screening tool for therapeutic molecules capable of modulating physiological cell death or survival and/or modulating cell cycle entry.
    Type: Grant
    Filed: March 29, 1999
    Date of Patent: September 14, 2004
    Assignee: Cerylid Pty., Ltd.
    Inventors: Suzanne Cory, Jerry McKee Adams, Leonie M. Gibson, Shaun P. Holmgreen
  • Patent number: 6787316
    Abstract: The invention relates to methods for cloning DNA molecules using recE/recT-mediated homologous recombination mechanism between at least two DNA molecules where one DNA molecule is a circular or linear DNA molecule and the second DNA molecule is a circular DNA molecule, and the second DNA molecule contains two regions with sequence homology to the first DNA molecule. Competent cells and vectors are also described.
    Type: Grant
    Filed: August 30, 2002
    Date of Patent: September 7, 2004
    Assignee: Europaisches Laboratorium fur Molekularbiologie (EMBL)
    Inventors: Francis Stewart, Youming Zhang, Frank Buchholz
  • Patent number: 6787683
    Abstract: The invention provides isolated nucleic acids and their encoded proteins that are involved in tocopherol or plastoquinone biosynthesis. The invention further provides recombinant expression cassettes, host cells, transgenic plants, and antibody compositions. The present invention provides methods and compositions relating to altering phytyl/prenyltransferase protein content and/or composition of plants.
    Type: Grant
    Filed: April 28, 2000
    Date of Patent: September 7, 2004
    Assignees: Pioneer Hi-Bred International, Inc., Board of Regents of the University and Community College Systems of Nevada on Behalf of the University of Nevada, Reno
    Inventors: Dean Della Penna, Eva Collakova, Sean J. Coughlan, Timothy G. Helentjaris
  • Patent number: 6787304
    Abstract: A method of detecting an enzyme-mediated DNA cleavage reaction in a fluorometric assay is provided. The method can be used to detect DNA cleavage caused by restriction endonucleases, retroviral integrase enzymes, DNases, RNases, or enzymes utilized in other strand separating processes in molecular biology.
    Type: Grant
    Filed: April 30, 1998
    Date of Patent: September 7, 2004
    Assignee: Georgetown University
    Inventors: Myun Ki Han, S. Paul Lee, Jack Chirikjian
  • Patent number: 6784290
    Abstract: Compositions and methods are provided for the modulation of ras expression. Oligonucleotides are provided which are targeted to nucleic acids encoding human ras. Oligonucleotides specifically hybridizable with mRNA encoding human H-ras, Ki-ras and N-ras are provided. Such oligonucleotides can be used for therapeutics and diagnostics as well as for research purposes. Methods are also disclosed for modulating ras gene expression in cells and tissues using the oligonucleotides provided, and for specific modulation of expression of activated ras. Methods for diagnosis, detection and treatment of conditions, or particular cancers, associated with ras are also disclosed.
    Type: Grant
    Filed: May 22, 2000
    Date of Patent: August 31, 2004
    Assignee: ISIS Pharmaceuticals, Inc.
    Inventors: Brett P. Monia, Lex M. Cowsert, Muthiah Manoharan
  • Patent number: 6784346
    Abstract: Compositions and methods of use are provided herein to make and use transgenic plants with value-added traits.
    Type: Grant
    Filed: March 29, 2000
    Date of Patent: August 31, 2004
    Assignee: The Regents of the University of California
    Inventors: Myeong-Je Cho, Peggy G. Lemaux, Bob B. Buchanan, Joshua Wong, Corina Marx
  • Patent number: 6783935
    Abstract: The present invention provides polynucleotides having base sequences of sequence Nos. 1 to 4, as polynucleotides having polymorphism sites capable of being useful indicators for prediction of validity of interferon therapy.
    Type: Grant
    Filed: March 22, 2001
    Date of Patent: August 31, 2004
    Assignee: Kabushiki Kaisha Toshiba
    Inventors: Minako Hijikata, Shunji Mishiro, Yasuhiko Oota, Koji Hashimoto