Patents Examined by Nancy A Treptow
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Patent number: 9732338Abstract: The promoter of the present invention causes a desired gene to be highly expressed, especially in thermotolerant yeast. The promoter is located upstream of the PIR1 gene or the CTR1 gene on the Kluyveromyces marxianus chromosome and comprises a region controlling expression of the PIR1 gene or the CTR1 gene.Type: GrantFiled: March 4, 2013Date of Patent: August 15, 2017Assignees: TOYOTA JIDOSHA KABUSHIKI KAISHA, YAMAGUCHI UNIVERSITY, JX NIPPON OIL & ENERGY CORPORATIONInventors: Noriko Shisa, Rinji Akada, Hisashi Hoshida, Kozue Mutaguchi, Takeshi Uemura, Kenro Tokuhiro, Satoshi Katahira
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Patent number: 9719084Abstract: A method is provided for generating RNA nanoparticles having modified nucleotides and/or having increased nuclease resistance where the RNA nanoparticles are formed cotranscriptionally by T7 RNA polymerase in the presence of manganese ions.Type: GrantFiled: September 6, 2013Date of Patent: August 1, 2017Assignees: The United States of America, as represented by the Secretary, Department of Health & Human Services, The Regents of the University of CaliforniaInventors: Bruce A. Shapiro, Kirill A. Afonin, Maria L. Kireeva, Mikhail Kashlev, Luc Jaeger, Wade W. Grabow
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Patent number: 9701964Abstract: The invention relates to methods, uses, systems, arrays, engineered nucleotide sequences and vectors for inhibiting bacterial population growth or for altering the relative ratio of sub-populations of first and second bacteria in a mixed population of bacteria. The invention is particularly useful, for example, for treatment of microbes such as for environmental, medical, food and beverage use. The invention relates inter alia to methods of controlling microbiologically influenced corrosion (MIC) or biofouling of a substrate or fluid in an industrial or domestic system.Type: GrantFiled: May 20, 2016Date of Patent: July 11, 2017Assignee: SNIPR TECHNOLOGIES LIMITEDInventors: Jasper Clube, Morten Sommer, Christian Grøndahl, Eric Van Der Helm, Ruben Vazquez-Uribe
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Patent number: 9701993Abstract: A new artificial translation-synthesis system of adding tRNAs binding special amino acids to the in vitro translation system and synthesizing peptides with special amino acids incorporated thereto according to a dual genetic code table and an artificial codon box division.Type: GrantFiled: August 26, 2011Date of Patent: July 11, 2017Assignee: THE UNIVERSITY OF TOKYOInventors: Hiroaki Suga, Hiroshi Murakami, Yuki Goto
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Patent number: 9683996Abstract: The present disclosure is directed toward measurement of expression of one or both of an activating Natural Killer (NK) cell receptor and its ligand(s) on peripheral blood cells as a means to assess solid tumor burden. In particular, the present disclosure provides tools for assessing cancer recurrence or risk thereof following reduction of a solid tumor, and for developing a treatment regime for a cancer patient.Type: GrantFiled: October 22, 2010Date of Patent: June 20, 2017Assignee: The Regents of the University of CaliforniaInventors: Andrew T. Parsa, Lewis L. Lanier, Courtney Crane
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Patent number: 9677103Abstract: A perfect palindrome operator sequence-based protein expression system is provided. The expression system comprises a promoter; and a perfect palindrome operator sequence, wherein the promoter is not T7. The expression system is preferably employed for the production of recombinant proteins by fermentation.Type: GrantFiled: August 14, 2013Date of Patent: June 13, 2017Assignee: Fujifilm Diosynth Biotechnologies UK LimitedInventors: Bhupendra Vallabh Kara, Christopher David John Lennon, Ian John Hodgson
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Patent number: 9677079Abstract: Disclosed are yeast cells expressing a polypeptide comprising a signal sequence and a human amyloid beta protein. Also disclosed are methods of screening yeast cells to identify compounds that prevent or suppress amyloid beta-induced toxicity and genetic suppressors or enhancers of amyloid beta-induced toxicity. Compounds identified by such screens can be used to treat or prevent neurodegenerative disorders such as Alzheimer's disease.Type: GrantFiled: January 11, 2011Date of Patent: June 13, 2017Assignee: Whitehead Insititute for Biomedical ResearchInventors: Kent E. S. Matlack, Susan L. Lindquist, Sebastian Treusch
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Patent number: 9677110Abstract: The “instant evolution” system was initially developed in E. coli, primarily because of the ease with which this organism can be genetically manipulated. Because many of the functionally important regions of rRNA are conserved among bacteria, drug leads developed against conserved targets in the E. coli system may produce broad-spectrum anti-infectives. In order to develop a system to produce narrow-spectrum anti-infectives, herein we disclose methods for identifying functional mutant P. aeruginosa ribosomes suitable as drug targets and for identifying drug candidates that do not bind to the human 16S rRNA.Type: GrantFiled: June 22, 2015Date of Patent: June 13, 2017Assignee: Wayne State UniversityInventor: Philip R. Cunningham
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Patent number: 9670503Abstract: The present invention provides hyperactive piggyBac transposons, in particular hyperactive piggyBac transposons from Trichoplusia ni (cabbage looper moth) that transpose at a higher frequency than wildtype. The invention also features integration defective piggyBac transposons. The piggyBac transposons and transposases can be used in gene transfer systems for stably introducing nucleic acids into the DNA of a cell. The gene transfer system can be used in methods, for example, but not limited to, gene therapy, insertional mutagenesis, or gene discovery.Type: GrantFiled: September 26, 2013Date of Patent: June 6, 2017Assignee: The Johns Hopkins UniversityInventor: Nancy Lynn Craig
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Patent number: 9663798Abstract: The aim is to increase the protein product yield in microbial fermentation. This is achieved by a method which introduces into a microorganism not only a first expression construct which encodes the protein, but also a second expression construct which encodes an auxiliary protease which differs from the protein, is proteolytically active and which comprises an amino acid sequence which is at least 50% identical to the amino acid sequence indicated in SEQ ID NO. 1.Type: GrantFiled: April 5, 2012Date of Patent: May 30, 2017Assignee: BASF SEInventors: Lukas Maksym, Ramona Knab, Stefan Evers, Karl-Heinz Maurer, Johannes Bongaerts
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Patent number: 9651558Abstract: The invention relates to bacterial cell surface display of post-translationally modified heterologous proteins. Provided is an isolated nucleic acid construct encoding a proteinaceous substance comprising, from the N-terminus to the C-terminus, at least (a) an N-terminal a lantibiotic leader sequence; (b) an amino acid sequence of interest to be post-translationally modified to a dehydroresidue- or thioether-bridge containing polypeptide; (c) a hydrophilic cell-wall spanning domain; (d) a sortase recognition motif; (e) a hydrophobic membrane spanning domain and (f) a C-terminal charged membrane anchoring domain. Also provided is a Gram-positive host cell expressing the construct, as well as a library of host cells.Type: GrantFiled: July 6, 2011Date of Patent: May 16, 2017Assignee: LanthioPep B.V.Inventor: Tjibbe Bosma
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Patent number: 9637748Abstract: The present invention provides novel C. botulinum conjugatively transmissible plasmids and methods of use thereof. Specifically, described herein are novel, conjugatively transmissible clostridial plasmids which are capable of being transferred among and between clostridial species. The novel plasmids of the present invention therefore permits the delivery of heterologous clostridial genes into a clostridial host, such as C. botulinum, and the expression of genes of interest in that host, including clostridial toxins and the nontoxigenic components of the toxin complex, toxin fragments, or antigenic portions thereof, in a way both that ensures abundant expression and facilitates purification. Furthermore, toxins with altered structures, chimeric, hybrid toxins, and other toxin derivatives valuable in medicine could be synthesized in this system.Type: GrantFiled: December 4, 2013Date of Patent: May 2, 2017Assignee: Wisconsin Alumni Research FoundationInventors: Eric A. Johnson, Kristin M. Marshall, Marite Bradshaw
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Patent number: 9630997Abstract: Disclosed are compositions and methods for expressing and purifying a peptide of interest using a Flagellar Type III secretion system. Disclosed are nucleic acid sequences that contain a FlgM nucleic acid sequence, a cleavage site, and a nucleic acid sequence of interest. Also disclosed are polypeptides that contain FlgM, a cleavage site and a peptide of interest. Methods of producing polypeptides that have FlgM, a cleavage site and a peptide of interest are provided.Type: GrantFiled: May 30, 2013Date of Patent: April 25, 2017Assignee: University of Utah Research FoundationInventors: Kelly T. Hughes, Baldomero M. Olivera
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Patent number: 9617604Abstract: A system for classifying thyroid nodule tissue as malignant or benign is provided that is based on the identification of sets of gene transcripts, which are characterized in that changes in expression of each gene transcript within a set of gene transcripts can be correlated to with either malignant or benign thyroid nodule disease. The thyroid classification system provides for sets of “thyroid classifying” target sequences and further provides for combinations of polynucleotide probes and primers derived there from. These combinations of polynucleotide probes can be provided in solution or as an array. The combination of probes and the arrays can be used for diagnosis. The invention further provides further methods of classifying thyroid nodule tissue.Type: GrantFiled: October 29, 2015Date of Patent: April 11, 2017Assignee: GENOMEDX BIOSCIENCES, INC.Inventors: Elai Davicioni, Sam Michael Wiseman
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Patent number: 9617335Abstract: The present invention is an inducible coexpression system, capable of controlled induction of expression of each gene product.Type: GrantFiled: August 5, 2013Date of Patent: April 11, 2017Assignee: AbSci LLCInventors: Sean McClain, Mark Valasek
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Patent number: 9611299Abstract: Provided are methods for highly expressing recombinant protein of engineering bacteria and the use thereof. The method comprises the following steps: (1) engineering bacteria of Escherichia coli with pET system are transfected with recombinant mutated plasmid to obtain positive monoclonal colonies; (2) the positive monoclonal colonies are enriched to obtain a seed bacteria solution, and the seed bacteria solution is induced to enrichment and growth in a large amount; and (3) the bacteria supernatant containing the recombinant protein as the expression target is separated, and then the recombinant protein in the bacteria supernatant is extracted and purified. The method is characterized in that the engineering bacteria of Escherichia coli with pET system are E. coli B834 (DE3).Type: GrantFiled: November 23, 2012Date of Patent: April 4, 2017Assignee: Protein Design Lab, Ltd.Inventor: Xiaoqing Qiu
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Patent number: 9593329Abstract: A method to assemble any desired nucleic acid molecule by combining cassettes in vitro to form assemblies which are further combined in vivo, or by assembling large numbers of DNA fragments by recombination in a yeast culture to obtain desired DNA molecules of substantial size is described.Type: GrantFiled: October 7, 2008Date of Patent: March 14, 2017Assignee: Synthetic Genomics, Inc.Inventors: Daniel G. Gibson, Lei Young, John I. Glass, Gwynedd A. Benders, J. Craig Venter, Clyde A. Hutchison, III, Hamilton O. Smith
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Patent number: 9587251Abstract: The present invention provides a method for obtaining diverse novel genes by inducing somatic cell homologous recombination at genetic loci in somatic cells. By controlling transcription activity of a gene that exists at a genetic locus in a eukaryotic organism cell wherein DNA homologous recombination is occurring at an arbitrary genetic locus, somatic cell homologous recombination is induced between said gene and a gene having a DNA sequence similar to said gene that exists in a region upstream of a transcription promoter, whereby it is possible to obtain diverse novel genes having a plurality of genetic information.Type: GrantFiled: December 22, 2003Date of Patent: March 7, 2017Assignees: Riken, Chiome Bioscience, Inc.Inventors: Kunihiro Ohta, Hidetaka Seo, Takehiko Shibata
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Patent number: 9574197Abstract: Disclosed herein are systems and methods for producing recombinant proteins utilizing mutant E. coli strains containing expression vectors carrying nucleic acids encoding the proteins, and secretory signal sequences to direct the secretion of the proteins to the culture medium. Host cells transformed with the expression vectors are also provided.Type: GrantFiled: July 15, 2016Date of Patent: February 21, 2017Assignees: WISCONSIN ALUMNI RESEARCH FOUNDATION, CORNELL UNIVERSITYInventors: Sydnor T. Withers, III, Miguel A. Dominguez, Matthew P. DeLisa, Charles H. Haitjema
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Patent number: 9567648Abstract: The present invention is directed to the detection of problematic foaming and bulking bacterial species in the biological wastewater treatment process. The invention provides various compositions of matter and methods for the detection of foaming and bulking bacterial species and genera in wastewater and other samples. PCR primers capable of amplifying 16s rRNA gene sequences from various foaming and bulking bacterial species are provided, as are probes that will specifically hybridize with PCR amplification products produced by the disclosed primers. In certain embodiments, the use of the disclosed PCR primers and probes in detection assays is disclosed.Type: GrantFiled: February 11, 2016Date of Patent: February 14, 2017Assignee: The Regents of the University of CaliforniaInventors: Betty Olson, Pitiporn Asvapathanagul