Patents Examined by Stephen Kapushoc
  • Patent number: 7855050
    Abstract: Methods of diagnosis of abnormal blood conditions associated with an increased risk of bleeding are described. Subjects homozygous or heterozygous for the GPVIb allele are at considered to be at increased risk of bleeding. Kits for carrying out the methods of diagnosis, and use of the methods and kits for determining the GPVI allelotype of subjects in need of surgery, with a low platelet count, with an acquired bleeding disorder, on blood thinning drugs, or of blood donors is also described.
    Type: Grant
    Filed: May 22, 2003
    Date of Patent: December 21, 2010
    Inventors: Willem Ouwehand, Peter Alexander Smethurst, Richard Willam Farndale
  • Patent number: 7855051
    Abstract: A method of detecting the presence of mycoplasma in a sample and a mycoplasm detection kit. A sample is contacted with a first and a second oligonucleotide probe, wherein the first and second oligonucleotide probes are substantially complementary to portions of a 16S ribosomal subunit of at least one mycoplasma species. The first probe may be labeled with a capture ligand. The second probe may be labeled with a first component of a detection system.
    Type: Grant
    Filed: September 12, 2006
    Date of Patent: December 21, 2010
    Assignee: Research & Diagnostic Systems, Inc.
    Inventors: Michael G Anderson, Jackie A. Ernst, Kim M. Herman-Hatten, James J. Rivard, Paul Younge
  • Patent number: 7851151
    Abstract: Provided are a HNF-1 ? gene including a novel single-nucleotide polymorphism and a protein encoded by the HNF-1 ? gene, a polynucleotide associated with MODY3 diabetes based on the HNF-1 ? gene, a microarray and a diagnostic kit including the polynucleotide, and a method for diagnosis of MODY3 diabetes.
    Type: Grant
    Filed: February 3, 2005
    Date of Patent: December 14, 2010
    Assignee: Samsung Electronics Co., Ltd.
    Inventors: Sung-young Jeong, Jin-soon Hwang
  • Patent number: 7846660
    Abstract: The present invention is a method for synthesizing microarrays having different oligonucleotides present within one feature area of the array. The method utilizes the techniques common to microarray synthesis, but limits the duration in which selected feature areas on the array are initially dosed with light so as to only deprotect a calculated ratio of the compounds forming the array's binding layer. The compounds initially deprotected are capped with a non-photosensitive protecting group, such as di-methoxy-trityl, to inhibit their involvement in the synthesis of a first group of DNA strands built onto the array. Once the first group of DNA strands have been synthesized, the original deprotected group may then be further processed to build one or more groups of DNA strands in the same feature area as the first group of DNA strands. The present invention also includes microarrays manufactured using the method.
    Type: Grant
    Filed: November 27, 2006
    Date of Patent: December 7, 2010
    Assignee: Roche Nimblegen, Inc.
    Inventors: Thomas Albert, Jason Norton, Roland Green
  • Patent number: 7846658
    Abstract: The invention relates to a method for improving the detection sensitivity in homogenous TR-FRET based bioaffinity assays. The sensitivity is improved by the use of long lifetime donors together with a high energy transfer efficiency and by carrying out the detection of the energy transfer based emission of the acceptor in a time window which is opened after a delay of 1 microsecond or more, but less than 50 microseconds, calculated from the donor excitation, and which time window has a width of 1 microsecond or more, but less than 100 microseconds. The invention concerns also the use of the improved method in multianalyte assays. Furthermore, the invention concerns a device suitable for carrying out the improved method.
    Type: Grant
    Filed: September 29, 2004
    Date of Patent: December 7, 2010
    Assignee: Wallac Oy
    Inventor: Ville Laitala
  • Patent number: 7842455
    Abstract: The invention relates to genetic screens for susceptibility to Alzheimer's disease. In particular, the invention provides genetic screens based on genotyping of the p21E2c31 polymorphism and/or the p21E3+20 C/T polymorphism in the p21cip 1 gene.
    Type: Grant
    Filed: May 21, 2004
    Date of Patent: November 30, 2010
    Assignee: ISIS Innovations, Ltd.
    Inventor: Zsuzsanna Nagy
  • Patent number: 7838227
    Abstract: The invention relates to methods and products simultaneously enabling detection of several biological threat agents, including viruses and bacteria, during a combat situation or in any suspected contamination situation.
    Type: Grant
    Filed: October 12, 2006
    Date of Patent: November 23, 2010
    Assignee: The United States of America as represented by the Secretary of the Army
    Inventor: Jose-Luis Sagripanti
  • Patent number: 7838647
    Abstract: Blood plasma of pregnant women contains fetal and (generally>90%) maternal circulatory extracellular DNA. Most of said fetal DNA contains .Itoreq.500 base pairs, said maternal DNA having a greater size. Separation of circulatory extracellular DNA of .Itoreq.500 base pairs results in separation of fetal from maternal DNA. A fraction of a blood plasma or serum sample of a pregnant woman containing, due to size separation (e.g. by chromatography, density gradient centrifugation or nanotechnological methods), extracellular DNA substantially comprising .Itoreq.500 base pairs is useful for non-invasive detection of fetal genetic traits (including the fetal RhD gene in pregnancies at risk for HDN; fetal Y chromosome-specific sequences in pregnancies at risk for X chromosome-linked disorders; chromosomal aberrations; hereditary Mendelian genetic disorders and corresponding genetic markers; and traits decisive for paternity determination) by e.g.
    Type: Grant
    Filed: September 14, 2007
    Date of Patent: November 23, 2010
    Assignee: Sequenom, Inc.
    Inventors: Sinuhe Hahn, Wolfgang Holzgreve, Bernhard Zimmermann, Ying Li
  • Patent number: 7838224
    Abstract: The invention concerns sensitive methods to measure mRNA levels in biopsied tumor tissues, including archived paraffin-embedded biopsy material. The invention also concerns breast cancer gene sets important in the diagnosis and treatment of breast cancer, and methods for assigning the most optimal treatment options to breast cancer patient based upon knowledge derived from gene expression studies.
    Type: Grant
    Filed: June 9, 2006
    Date of Patent: November 23, 2010
    Assignee: Genomic Health, Inc.
    Inventors: Joffre B. Baker, Maureen T. Cronin, Michael C. Kiefer, Steve Shak, Michael Graham Walker
  • Patent number: 7833706
    Abstract: The present invention is based on the discovery of genetic polymorphisms that are associated with rheumatoid arthritis. In particular, the present invention relates to nucleic acid molecules containing the polymorphisms, variant proteins encoded by such nucleic acid molecules, reagents for detecting the polymorphic nucleic acid molecules and proteins, and methods of using the nucleic acid and proteins as well as methods of using reagents for their detection.
    Type: Grant
    Filed: January 30, 2004
    Date of Patent: November 16, 2010
    Assignee: Celera Corporation
    Inventors: Ann Bethea Begovich, Victoria Elizabeth Hope Carlton, Steven Jon Schrodi, Heather Camille Alexander
  • Patent number: 7820388
    Abstract: The present invention provides novel mutations of the CFTR gene related to cystic fibrosis or to conditions associated with cystic fibrosis. Also provided are probes for detecting the mutant sequences. Methods of identifying if an individual has a genotype containing one or more mutations in the CFTR gene are further provided.
    Type: Grant
    Filed: November 9, 2007
    Date of Patent: October 26, 2010
    Assignee: Quest Diagnostics Investments Incorporated
    Inventors: Weimin Sun, Matthew J. McGinniss, Donghui Huang, Arlene Buller, Raymond Fenwick, Mei Peng, Franklin Quan
  • Patent number: 7816083
    Abstract: The present invention is based on the discovery of genetic polymorphisms that are associated with neurodegenerative disease, particularly Alzheimer's disease and Parkinson's disease. In particular, the present invention relates to nucleic acid molecules containing the polymorphisms, variant proteins encoded by such nucleic acid molecules, reagents for detecting the polymorphic nucleic acid molecules and proteins, and methods of using the nucleic acid and proteins as well as methods of using reagents for their detection.
    Type: Grant
    Filed: May 1, 2008
    Date of Patent: October 19, 2010
    Assignee: Celera Corporation
    Inventors: Andrew Grupe, Yonghong Li
  • Patent number: 7811758
    Abstract: A method of automatically isolating and purifying nucleic acid from a nucleic acid-containing specimen is provided, the method comprising: injecting a liquid into a cartridge for isolation and purification of a nucleic acid including at least two openings from one opening of the at least two openings, in which the cartridge includes a container having the at least two openings and containing a nucleic acid-adsorbent solid phase; passing the liquid through the nucleic acid-adsorbent solid phase by a pressure difference generated by a pressure generation means for generating a pressure difference between the inside and outside of the container; and discharging the liquid from the other opening of the container to the outside of the container by a pressure difference generated by the pressure generation means, wherein a pressure generated in the inside of the container by the pressure generation means is measured, a pressure change velocity and a pressure change acceleration are calculated on the basis of the va
    Type: Grant
    Filed: March 28, 2005
    Date of Patent: October 12, 2010
    Assignee: Fujifilm Corporation
    Inventors: Toshihiro Mori, Yoshihiko Makino
  • Patent number: 7811755
    Abstract: The invention relates to methods, articles and compositions for the detection and analysis of biomolecules in a sample. Provided assays include those determining the presence of a target biomolecule in a sample or its relative amount, or the assays may be quantitative or semi-quantitative. The methods can be performed in an array format on a substrate.
    Type: Grant
    Filed: January 10, 2006
    Date of Patent: October 12, 2010
    Assignee: The Regents of the University of California
    Inventors: Guillermo C. Bazan, Bin Liu
  • Patent number: 7811794
    Abstract: The present invention is based on the discovery of genetic polymorphisms that are associated with rheumatoid arthritis. In particular, the present invention relates to nucleic acid molecules containing the polymorphisms, variant proteins encoded by such nucleic acid molecules, reagents for detecting the polymorphic nucleic acid molecules and proteins, and methods of using the nucleic acid and proteins as well as methods of using reagents for their detection.
    Type: Grant
    Filed: March 18, 2004
    Date of Patent: October 12, 2010
    Assignee: Celera Corporation
    Inventors: Michele Cargill, Ann Bethea Begovich, Heather Camille Alexander
  • Patent number: 7803588
    Abstract: The present invention disposes a membrane between two electrical conductive walls having a height at least as great as the thickness of the membrane. The conductive walls are fabricated on an electrically insulative chip base. The chip base has one or more through hole between the electrically conducting walls. The chip is placed inside a container having a well below the through hole of the electrically insulative base. At least one passageway extends from the well to the periphery of the container. This invention probes changes of the membrane as an in-plane electric field is applied between the conductive walls. The well may include various compounds while other compounds can be placed in contact with the top of the membrane. The passageways are used to introduce substances into and out of the well.
    Type: Grant
    Filed: September 7, 2007
    Date of Patent: September 28, 2010
    Inventor: Thusara Sugat Chandra Abeygunaratne
  • Patent number: 7803534
    Abstract: It is an object to provide a method whereby with respect to a microorganism present in an environment contaminated with tetrachloroethylene (PCE) and trichloroethylene (TCE), capability of the microorganism to degrade contaminants can be judged promptly. In order to achieve the above-described object, a biological activity judging method according to the present invention is a method of judging capability of a contaminated environment to eliminate an organochlorine compound, in which using a DNA probe that allows a bacterium to be detected specifically, which has a degradation activity with respect to the organochlorine compound and/or a dechlorinated product thereof, the bacterium in the environment is detected. The present invention also provides a new type of polynucleotide that can be used as a DNA probe in the biological activity judging method according to the present invention.
    Type: Grant
    Filed: February 25, 2005
    Date of Patent: September 28, 2010
    Assignee: Panasonic Environmental Systems & Engineering Co., Ltd.
    Inventors: Yoshitaka Ito, Kazuhiro Takamizawa, Hitoshi Iwahashi
  • Patent number: 7803541
    Abstract: Methods of detecting two or more nucleic acids in a multiplex branched-chain DNA assay are provided. Different nucleic acids are captured through cooperative hybridization events on different, identifiable subsets of particles or at different selected positions on a spatially addressable solid support. Compositions, kits, and systems related to the methods are also described.
    Type: Grant
    Filed: May 11, 2006
    Date of Patent: September 28, 2010
    Assignee: Panomics, Inc.
    Inventors: Yuling Luo, Wen Yang
  • Patent number: 7803539
    Abstract: Provided is a method of isolating and purifying nucleic acids using an immobilized hydrogel or polyethylene glycol (PEG)-hydrogel copolymer. The method includes: immobilizing a functional group-containing hydrogel or PEG-hydrogel copolymer on a substrate; adding a mixed sample solution containing a salt and nucleic acids to the hydrogel- or PEG-hydrogel copolymer-immobilized substrate to bind the nucleic acids to the hydrogel or the PEG-hydrogel copolymer; washing the nucleic acid-bound hydrogel or PEG-hydrogel copolymer; and eluting the nucleic acids from the hydrogel or the PEG-hydrogel copolymer using an elution solvent. Therefore, binding and elution of nucleic acids can be performed even with no addition of a separate chemical substance, and an effect on a subsequent process such as PCR can be minimized. Furthermore, the amount and intensity for binding nucleic acids can be adjusted according to PEG concentration, and the presence of a hydrogel compound on a substrate enables patterning.
    Type: Grant
    Filed: December 7, 2005
    Date of Patent: September 28, 2010
    Assignee: Samsung Electronics Co., Ltd.
    Inventors: Chang-eun Yoo, Joon-ho Kim, Kyu-youn Hwang, Hun-joo Lee, Hee-kyun Lim, Jun-hong Min
  • Patent number: 7795005
    Abstract: A micro array instrument is used in which an oligonucleotide based on a species- or genus-specific nucleotide sequence of subject bacteria is immobilized on a surface of a substrate. By confirming whether the oligonucleotide immobilized on the substrate has hybridized with a probe prepared from a test sample, bacteria contained in the test sample can be detected and identified easily, quickly, and accurately.
    Type: Grant
    Filed: February 25, 2005
    Date of Patent: September 14, 2010
    Assignee: Suntory Holdings Limited
    Inventors: Yukiko Kodama, Kazushige Hatanaka, Kouichi Tanaka, Hiroko Nakagawa, Shougo Moriya, Kaoru Osano