Patents by Inventor Brian Reed

Brian Reed has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20210354133
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: November 18, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210354134
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: November 18, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210331170
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: October 28, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210270740
    Abstract: Some aspects relate to an integrated circuit, comprising at least one photodetection region configured to generate charge carriers responsive to incident photons emitted from a sample, at least one charge storage region configured to receive the charge carriers from the photodetection region, and at least one controller configured to obtain information about the incident photons, the information comprising at least one member selected from the group comprising pulse duration and interpulse duration and at least one member selected from the group comprising wavelength information, luminescence lifetime information, and intensity information. In some embodiments, the information comprises at least three, four, and/or five members selected from the group comprising wavelength information, luminescence lifetime information, intensity information, pulse duration information, and interpulse duration information. In some embodiments, the information obtained may be used to identify the sample.
    Type: Application
    Filed: March 2, 2021
    Publication date: September 2, 2021
    Inventors: Gerard Schmid, Dajiang Yang, Eric A.G. Webster, Xin Wang, Todd Rearick, Changhoon Choi, Ali Kabiri, Kyle Preston, Brian Reed
  • Patent number: 11091497
    Abstract: 1-Phenylacetyl-8-aminohexahydro-2H-pyrano[3,4-b]pyrazines of formula are disclosed. The compounds are kappa ligands and are useful to treat drug dependency, pruritus, pain, and inflammation.
    Type: Grant
    Filed: December 7, 2018
    Date of Patent: August 17, 2021
    Assignee: The Rockefeller University
    Inventors: Mary Jeanne Kreek, Amy Ripka, Brian Reed, Eduardo Butelman
  • Patent number: 11082710
    Abstract: Methods, devices, and computer-program products are provided for adding and decoding data to a digital video signal in a visually imperceptible manner. For example, an encoded video frame can be obtained, and one or more blocks of the encoded video frame can be decoded. Binary data can be added to a subset of pixels from a set of pixels of the one or more blocks. For instance, a pixel component can be modulated to add the binary data. The one or more blocks can be re-encoded using at least one coding mode. The re-encoded one or more blocks can be added to the encoded video frame.
    Type: Grant
    Filed: May 6, 2019
    Date of Patent: August 3, 2021
    Assignee: INSCAPE DATA, INC.
    Inventors: W. Leo Hoarty, Kyoungsoo Moon, Brian Reed, Zeev Neumeier
  • Patent number: 11080331
    Abstract: A system, method and computer program utilize a distance associative hashing algorithmic means to provide a highly efficient means to rapidly address a large database. The indexing means can be readily subdivided into a plurality of independently-addressable segments where each such segment can address a portion of related data of the database where the subdivided indexes of said portions reside entirely in the main memory of each of a multiplicity of server means. The resulting cluster of server means, each hosting an addressable sector of a larger database of searchable audio or video information, provides a significant improvement in the latency and scalability of an Automatic Content Recognition system, among other uses.
    Type: Grant
    Filed: December 10, 2018
    Date of Patent: August 3, 2021
    Assignee: INSCAPE DATA, INC.
    Inventors: Zeev Neumeier, Brian Reed
  • Publication number: 20210221839
    Abstract: The present disclosure relates to compounds and methods for selective C-terminal functionalization of peptides. In certain embodiments, the compounds have improved water-solubility, and are suitable for use in connection with peptide sequencing methodologies.
    Type: Application
    Filed: January 20, 2021
    Publication date: July 22, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210218224
    Abstract: Disclosed herein are aspects of a pulsed laser light source for producing excitation light in an integrated bioanalytical system. In some embodiments, the light source comprises one or more laser diodes that produces pulsed light signals synchronized with a common clock source for excitation of samples within reaction chambers on at least one chip. The light source may be used to provide excitation for a system with a large sensor array with reduced cost, size and electrical power requirements.
    Type: Application
    Filed: January 14, 2021
    Publication date: July 15, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Matthew DYER, Jonathan M. Rothberg, Brian Reed, Todd Rearick, Gerard Schmid, Faisal R. Ahmad, Michael Bellos, Benjamin Cipriany, Kyle Preston, Ali Kabiri
  • Publication number: 20210179629
    Abstract: 1-Phenylacetyl-8-aminohexahydro-2H-pyrano[3,4-b]pyrazines of formula are disclosed. The compounds are kappa ligands and are useful to treat drug dependency, pruritus, pain, and inflammation.
    Type: Application
    Filed: December 7, 2018
    Publication date: June 17, 2021
    Applicant: The Rockefeller University
    Inventors: Mary Jeanne KREEK, Amy RIPKA, Brian REED, Eduardo BUTELMAN
  • Publication number: 20210174893
    Abstract: The present disclosure provides, in some aspects, methods for using FRET-based distance measurements to refine and constrain protein structure prediction algorithms.
    Type: Application
    Filed: December 10, 2020
    Publication date: June 10, 2021
    Applicant: Homodeus, Inc.
    Inventors: Benjamin Rosenbluth, Brian Reed, Jonathan M. Rothberg
  • Publication number: 20210174903
    Abstract: The present disclosure provides, in some aspects, methods for enhanced protein structure prediction using protein homology discovery and constrained distograms.
    Type: Application
    Filed: December 10, 2020
    Publication date: June 10, 2021
    Applicant: Protein Evolution Inc.
    Inventors: Jonathan M. Rothberg, Brian Reed, Eric Kauderer-Abrams, Zhizhuo Zhang, Mohammad Moghadamfalahi
  • Publication number: 20210148922
    Abstract: Provided herein are methods of single-polypeptide sequencing and reconstruction. Also provided herein are compositions, kits and devices useful for the same.
    Type: Application
    Filed: October 28, 2020
    Publication date: May 20, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Matthew Dyer, Brian Reed
  • Publication number: 20210148921
    Abstract: Aspects of the application provide methods of preparing an enriched sample for polypeptide sequencing, and compositions, kits and devices useful for the same.
    Type: Application
    Filed: October 28, 2020
    Publication date: May 20, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Brian Reed, Matthew Dyer
  • Publication number: 20210147474
    Abstract: Aspects of the application provide methods of preparing a multiplexed sample for polypeptide sequencing, and compositions, kits and devices useful for the same.
    Type: Application
    Filed: October 28, 2020
    Publication date: May 20, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Matthew Dyer, Brian Reed
  • Publication number: 20210139973
    Abstract: Provided herein are methods of single-cell polypeptide and/or polynucleic acid sequencing, which facilitate the direct sequencing of a single cell without amplification. Also provided herein are compositions, kits and devices useful for the same.
    Type: Application
    Filed: October 28, 2020
    Publication date: May 13, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Matthew Dyer, Brian Reed
  • Patent number: 11001875
    Abstract: Methods of sequencing molecules based on luminescence lifetimes and/or intensities are provided. In some aspects, methods of sequencing nucleic acids involve determining the luminescence lifetimes, and optionally luminescence intensities, of a series of luminescently labeled nucleotides incorporated during a nucleic acid sequencing reaction.
    Type: Grant
    Filed: December 7, 2018
    Date of Patent: May 11, 2021
    Assignee: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, Jeremy Lackey, Brian Reed, Xinghua Shi, Haidong Huang
  • Publication number: 20210112313
    Abstract: Methods, systems, devices, and computer-program products are described herein for providing dynamic content serving. The dynamic content serving technology can identify, in real-time, programming arriving at a client device, identify a specific media segment being received and/or displayed, and determine which pre-stored substitute media segment may be used to replace the identified segment. A picture-in-picture channel can be used to display the substitute media segment.
    Type: Application
    Filed: October 12, 2020
    Publication date: April 15, 2021
    Applicant: INSCAPE DATA, INC.
    Inventors: Zeev Neumeier, Brian Reed
  • Publication number: 20210102180
    Abstract: Compositions comprising modified recombinant polymerizing enzymes are provided, along with nucleic acid molecules encoding the modified polymerizing enzymes. In some aspects, methods of using such polymerizing enzymes to synthesize a nucleic acid molecule or to sequence a nucleic acid template are provided.
    Type: Application
    Filed: June 26, 2020
    Publication date: April 8, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Brian Reed, Manjula Pandey
  • Publication number: 20200395099
    Abstract: Described herein are systems and techniques for identifying polypeptides using data collected by a protein sequencing device. The protein sequencing device may collect data obtained from detected light emissions by luminescent labels during binding interactions of reagents with amino acids of the polypeptide. The light emissions may result from application of excitation energy to the luminescent labels. The device may provide the data as input to a trained machine learning model to obtain output that may be used to identify the polypeptide. The output may indicate, for each of a plurality of locations in the polypeptide, one or more likelihoods that one or more respective amino acids is present at the location. The output may be matched to an amino acid sequence that specifies a protein.
    Type: Application
    Filed: June 12, 2020
    Publication date: December 17, 2020
    Applicant: Quantum-Si Incorporated
    Inventors: Michael Meyer, Brian Reed, Zhizhuo Zhang, Sabrina Rashid, Bradley Robert Parry