Abstract: Systems and methods are disclosed for receiving one or more electronic slide images associated with a tissue specimen, the tissue specimen being associated with a patient and/or medical case, partitioning a first slide image of the one or more electronic slide images into a plurality of tiles, detecting a plurality of tissue regions of the first slide image and/or plurality of tiles to generate a tissue mask, determining whether any of the plurality of tiles corresponds to non-tissue, removing any of the plurality of tiles that are determined to be non-tissue, determining a prediction, using a machine learning prediction model, for at least one label for the one or more electronic slide images, the machine learning prediction model having been generated by processing a plurality of training images, and outputting the prediction of the trained machine learning prediction model.

Abstract: A method for processing electronic medical images may include receiving an initial whole slide image of a pathology specimen, receiving information about slide quality aspects to modify, and generating a synthetic whole slide image by applying a machine learning model to modify the received initial whole slide image according to the received information. The pathology specimen may be associated with a patient. The synthetic whole slide image may have a reduced quality as compared to the initial whole slide image.

Abstract: A method for identifying a mutational signature may include receiving one or more digital images into electronic storage for at least one patient, identifying one or more neoplasms in each received digital image, extracting one or more visual features from each identified neoplasm, and applying a trained machine learning system to identify a mutational signature ratio vector for the one or more extracted visual features.

Abstract: Systems and methods are disclosed for predicting a resistance index associated with a tumor and surrounding tissue, comprising receiving one or more digital images of a pathology specimen, receiving additional information about a patient and/or a disease associated with the pathology specimen, determining at least one target region of the one or more digital images for analysis and removing a non-relevant region of the one or more digital images, applying a machine learning system to the one or more digital images to determine a resistance index for the target region of the one or more digital images, the machine learning system having been trained using a plurality of training images to predict the resistance index for the target region using a plurality of images of pathology specimens, and outputting the resistance index corresponding to the target region.

Abstract: Systems and methods are disclosed for processing digital images to predict at least one continuous value comprising receiving one or more digital medical images, determining whether the one or more digital medical images includes at least one salient region, upon determining that the one or more digital medical images includes the at least one salient region, predicting, by a trained machine learning system, at least one continuous value corresponding to the at least one salient region, and outputting the at least one continuous value to an electronic storage device and/or display.

Abstract: A computer-implemented method for detecting tumor subclones may include receiving one or more digital images into a digital storage device, the one or more digital images including images of a tumor of a patient, detecting one or more neoplasms in the one or more received digital images for each patient, extracting one or more visual features from each detected neoplasm, determining a hierarchy dendrogram based on the detected one or more neoplasms and the extracted one or more visual features for each detected neoplasm, determining one or more leaf nodes based on the determined hierarchy dendrogram, and determining whether there are two or more neoplasms among the detected one or more neoplasms that originated independently.

Abstract: Systems and methods are disclosed for generating synthetic medical images, including images presenting rare conditions or morphologies for which sufficient data may be unavailable. In one aspect, style transfer methods may be used. For example, a target medical image, a segmentation mask identifying style(s) to be transferred to area(s) of the target, and source medical image(s) including the style(s) may be received. Using the mask, the target may be divided into tile(s) corresponding to the area(s) and input to a trained machine learning system. For each tile, gradients associated with a content and style of the tile may be output by the system. Pixel(s) of at least one tile of the target may be altered based on the gradients to maintain content of the target while transferring the style(s) of the source(s) to the target. The synthetic medical image may be generated from the target based on the altering.

Abstract: Systems and methods are disclosed for identifying tissue specimen types present in digital whole slide images. In some aspects, tissue specimen types may be identified using unsupervised machine learning techniques for out-of-distribution detection. For example, a digital whole slide image of a tissue specimen and a recorded tissue specimen type for the digital whole slide image may be received. One or more feature vectors may be extracted from one or more foreground tiles of the digital whole slide image identified as including the tissue specimen, and a distribution learned by a machine learning system for the recorded tissue specimen type may be received. Using the distribution, a probability of the feature vectors corresponding to the recorded tissue specimen type may be computed and used as a basis for classifying the foreground tiles from which the feature vectors are extracted as an in-distribution foreground tile or an out-of-distribution foreground tile.

Abstract: A computer-implemented method for processing digital pathology images, the method including receiving a plurality of digital pathology images of at least one pathology specimen, the pathology specimen being associated with a patient. The method may further include determining, using a machine learning system, whether artifacts or objects of interest are present on the digital pathology images. Once the machine learning system has determined that an artifact or object of interest is present, the system may determine one or more regions on the digital pathology images that contain artifacts or objects of interest. Once the system determines the regions on the digital pathology images that contain artifacts or objects of interest, the system may use a machine learning system to inpaint or suppress the region and output the digital pathology images with the artifacts or objects of interest inpainted or suppressed.

Abstract: A computer-implemented method for processing electronic medical images, the method including receiving images of at least one pathology specimen, the pathology specimen being associated with a patient. The system may determine, using a machine learning system and based on the electronic medical images, at least one contributing cause of death. The system may provide at least contributing cause of death.

Abstract: A computer-implemented method for processing medical images, the method may include receiving a plurality of medical images of at least one pathology specimen, the pathology specimen being associated with a patient. The method may further include receiving a gross description, the gross description comprising data about the medical images. The method may next include extracting data from the description. Next, the method may include determining, using a machine learning system, at least one associated location on the medical images for one or more pieces of data extracted. The method may then include outputting a visual indication of the gross description data displayed in relation to the medical images.

Abstract: Systems and methods are disclosed for receiving a target image corresponding to a target specimen, the target specimen comprising a tissue sample of a patient, applying a machine learning model, which may also be known as a machine learning system, to the target image to determine at least one characteristic of the target specimen and/or at least one characteristic of the target image, the machine learning model having been generated by processing a plurality of training images to predict at least one characteristic, the training images comprising images of human tissue and/or images that are algorithmically generated, and outputting the at least one characteristic of the target specimen and/or the at least one characteristic of the target image.

Abstract: Systems and methods are disclosed for identifying a diagnostic feature of a digitized pathology image, including receiving one or more digitized images of a pathology specimen, and medical metadata comprising at least one of image metadata, specimen metadata, clinical information, and/or patient information, applying a machine learning model to predict a plurality of relevant diagnostic features based on medical metadata, the machine learning model having been developed using an archive of processed images and prospective patient data, and determining at least one relevant diagnostic feature of the relevant diagnostic features for output to a display.

Abstract: A computer-implemented method of reviewing digital pathology data may include receiving a digital pathology image into a digital storage device, the digital pathology image being associated with a patient, providing for display the digital pathology image on a display, pairing the digital pathology image with a physical token of the digital pathology image in an interactive system, receiving one or more commands from the interactive system, determining one or more manipulations or modifications to the displayed digital pathology image based on the one or more commands, and providing for display a modified digital pathology image on the display according to the determined one or more manipulations or modifications.

Abstract: Systems and methods are disclosed for receiving a digital image corresponding to a target specimen associated with a pathology category, wherein the digital image is an image of tissue specimen, determining a detection machine learning model, the detection machine learning model being generated by processing a plurality of training images to output a cancer qualification and further a cancer quantification if the cancer qualification is an confirmed cancer qualification, providing the digital image as an input to the detection machine learning model, receiving one of a pathological complete response (pCR) cancer qualification or a confirmed cancer quantification as an output from the detection machine learning model, and outputting the pCR cancer qualification or the confirmed cancer quantification.

Abstract: A computer-implemented method for processing an electronic image may include receiving, by an artificial intelligence (AI) system at an electronic storage of the AI system, one or more digital whole slide images (WSIs) and extracting one or more vectors of features from one or more foreground tiles of tile images of the one or more digital WSIs. The method may include running a trained machine learning model on the one or more vectors of features and determining, based on an output of the trained machine learning model, whether one or more quality issues are present in the one or more digital WSIs.

Abstract: Systems and methods are disclosed for receiving digital images of a pathology specimen from a patient, the pathology specimen comprising tumor tissue, the one or more digital images being associated with data about a plurality of biomarkers in the tumor tissue and data about a surrounding invasive margin around the tumor tissue; identifying the tumor tissue and the surrounding invasive margin region to be analyzed for each of the one or more digital images; generating, using a machine learning model on the one or more digital images, at least one inference of a presence of the plurality of biomarkers in the tumor tissue and the surrounding invasive margin region; determining a spatial relationship of each of the plurality of biomarkers identified in the tumor tissue and the surrounding invasive margin region to themselves and to other cell types; and determining a prediction for a treatment outcome and/or at least one treatment recommendation for the patient.

Abstract: A computer-implemented method for processing electronic medical images, the method including receiving a plurality of electronic medical images of a medical specimen associated with a single patient. The plurality of electronic medical images may be inputted into to a trained machine learning system, the trained machine learning system being trained to compare each of the plurality of electronic medical images to each other to determine whether each pair of the electronic medical images matches within a predetermined similarity threshold. The trained machine learning system may output whether each pair of the electronic medical images matches within a predetermined similarity threshold. The output may be stored.

Abstract: Systems and methods are disclosed for processing digital images to identify diagnostic tests, the method comprising receiving one or more digital images associated with a pathology specimen, determining a plurality of diagnostic tests, applying a machine learning system to the one or more digital images to identify any prerequisite conditions for each of the plurality of diagnostic tests to be applicable, the machine learning system having been trained by processing a plurality of training images, identifying, using the machine learning system, applicable diagnostic tests of the plurality of diagnostic tests based on the one or more digital images and the prerequisite conditions, and outputting the applicable diagnostic tests to a digital storage device and/or display.

Abstract: A computer-implemented method may include receiving a collection of unstained digital histopathology slide images at a storage device and running a trained machine learning model on one or more slide images of the collection to infer a presence or an absence of a salient feature. The trained machine learning model may have been trained by processing a second collection of unstained or stained digital histopathology slide images and at least one synoptic annotation for one or more unstained or stained digital histopathology slide images of the second collection. The computer-implemented method may further include determining at least one map from output of the trained machine learning model and providing an output from the trained machine learning model to the storage device.