Patents by Inventor Chuan-Fa Liu

Chuan-Fa Liu has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240117402
    Abstract: The present invention relates to methods that employ enzymes having Asx-specific ligase and cyclase activity, namely butelase-1, VyPAL2 and OaAEPI b, as a means for engineering novel (poly) peptide theranostics. The differential substrate specificities and differential optimal pH of the Asx-specific ligase and cyclase are used to provide sufficient orthogonality for a tandem ligation and cyclization of proteins. Also encompassed are the corresponding uses.
    Type: Application
    Filed: February 10, 2022
    Publication date: April 11, 2024
    Inventors: Chuan Fa Liu, Dingpeng Zhang, Zhen Wang, James P. Tam
  • Patent number: 11795488
    Abstract: The present invention relates to a method of ligating a first peptide via its C-terminus to the N-terminus of a second peptide, wherein the reaction is catalyzed by an asparagine/aspartate (Asx) peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1. Further encompassed are a method of preparing a dimer, oligomer, or multimer of one or more peptides of interest and a method of modifying or tagging the surface of a target cell by one or more peptides of interest. Also encompassed in the invention are the ligated peptides and/or tagged target cells obtainable according to any of the methods, the peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1, as well as kits comprising said peptide ligase.
    Type: Grant
    Filed: September 12, 2017
    Date of Patent: October 24, 2023
    Assignee: NANYANG TECHNOLOGICAL UNIVERSITY
    Inventors: Bin Wu, Renliang Yang, Yee Hwa Wong, Julien Lescar, Chuan Fa Liu, James P Tam, Kien Truc Giang Nguyen, Ziqi Long
  • Publication number: 20230128192
    Abstract: The present invention relates to a method of ligating a first peptide via its C-terminus to the N-terminus of a second peptide, wherein the reaction is catalyzed by an asparagine/aspartate (Asx) peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1. Further encompassed are a method of preparing a dimer, oligomer, or multimer of one or more peptides of interest and a method of modifying or tagging the surface of a target cell by one or more peptides of interest. Also encompassed in the invention are the ligated peptides and/or tagged target cells obtainable according to any of the methods, the peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1, as well as kits comprising said peptide ligase.
    Type: Application
    Filed: September 30, 2022
    Publication date: April 27, 2023
    Inventors: Bin WU, Renliang YANG, Yee Hwa WONG, Julien LESCAR, Chuan Fa LIU, James P TAM, Kien Truc Giang NGUYEN, Ziqi LONG
  • Publication number: 20220213461
    Abstract: The present invention lies in the technical field of enzyme technology and specifically relates to enzymes having Asx-specific ligase and cyclase activity and to nucleic acids encoding those as well as methods of the manufacture of said enzymes. The enzymes having Asx-specific ligase and cyclase are isolated from plants of the Violaceae family. Further encompassed are methods and uses of these enzymes.
    Type: Application
    Filed: May 6, 2020
    Publication date: July 7, 2022
    Inventors: James P. TAM, Julien LESCAR, Muxinya HE, Abbas EL SAHILI, Chuan Fa LIU, Side HU
  • Patent number: 11091786
    Abstract: The present invention relates to a method of forming a peptide of Formula (I) (P1-Xaa1-Xaa2-P2) by ligating a first peptide of Formula (II) (P1-Xaa1-X—R, wherein X is O or S) to a second peptide of Formula (III) (Xaa1-Xaa2-P2) by enzymatically cleaving the bond between “Asx” and “X” in the first peptide of Formula (II) and ligating the fragment P1-Asx of the first peptide to the second peptide of Formula (III), wherein the enzymatic cleavage and ligation reaction is catalyzed by butelase 1 (SEQ ID NO: 1) and the peptide of Formula (I) is a depsipeptide, preferably a thiodepsipeptide. Further encompassed are peptides and dendrimeric peptide assemblies prepared using the presently disclosed method, as well as use of the dendrimeric peptide assemblies as a vaccine, medicament, or diagnostic agent, particularly as an antimicrobial agent.
    Type: Grant
    Filed: September 29, 2016
    Date of Patent: August 17, 2021
    Assignee: Nanyang Technological University
    Inventors: James P Tam, Kien Truc Giang Nguyen, Yuan Cao, Chuan Fa Liu
  • Publication number: 20190218586
    Abstract: The present invention relates to a method of ligating a first peptide via its C-terminus to the N-terminus of a second peptide, wherein the reaction is catalyzed by an asparagine/aspartate (Asx) peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1. Further encompassed are a method of preparing a dimer, oligomer, or multimer of one or more peptides of interest and a method of modifying or tagging the surface of a target cell by one or more peptides of interest. Also encompassed in the invention are the ligated peptides and/or tagged target cells obtainable according to any of the methods, the peptide ligase OaAEPI Cys247Ala having the amino acid sequence of SEQ ID NO: 1, as well as kits comprising said peptide ligase.
    Type: Application
    Filed: September 12, 2017
    Publication date: July 18, 2019
    Inventors: Bin WU, Renliang YANG, Yee Hwa WONG, Julien LESCAR, Chuan Fa LIU, James P TAM, Kien Truc Giang NGUYEN, Ziqi LONG
  • Publication number: 20180274003
    Abstract: The present invention relates to a method of forming a peptide of Formula (I) (P1-Xaa1-Xaa2-P2) by ligating a first peptide of Formula (II) (P1-Xaa1-X—R, wherein X is O or S) to a second peptide of Formula (II I) (Xaa1-Xaa2-P2) by enzymatically cleaving the bond between “Asx” and “X” in the first peptide of Formula (II) and ligating the fragment P1-Asx of the first peptide to the second peptide of Formula (III), wherein the enzymatic cleavage and ligation reaction is catalyzed by butelase 1 (SEQ ID NO: 1) and the peptide of Formula (I) is a depsipeptide, preferably a thiodepsipeptide. Further encompassed are peptides and dendrimeric peptide assemblies prepared using the presently disclosed method, as well as use of the dendrimeric peptide assemblies as a vaccine, medicament, or diagnostic agent, particularly as an antimicrobial agent.
    Type: Application
    Filed: September 29, 2016
    Publication date: September 27, 2018
    Inventors: James P Tam, Kien Truc Giang Nguyen, Yuan Cao, Chuan Fa Liu
  • Patent number: 9534032
    Abstract: The invention relates to the field of compounds, especially peptides or polypeptides, that have thrombopoietic activity. The peptides and polypeptides of the invention may be used to increase platelets or platelet precursors (e.g., megakaryocytes) in a mammal.
    Type: Grant
    Filed: April 30, 2014
    Date of Patent: January 3, 2017
    Assignee: AMGEN INC.
    Inventors: Chuan-Fa Liu, Ulrich Feige, Janet C. Cheetham
  • Patent number: 9453044
    Abstract: The invention relates to the synthesis of peptides, proteins and related bioconjugates, and in particular, to such synthesis using a peptide ligation method whereby a C-terminal salicylaldehyde ester peptide is reacted with an aminoacyl-N-hydroxl peptide. The invention also relates to the synthesis of cyclic peptides, including serinyl- or threonyl-containing cyclic peptides. The invention further relates to a solid phase synthesis of C-terminal salicylaldehyde ester peptides.
    Type: Grant
    Filed: February 6, 2013
    Date of Patent: September 27, 2016
    Assignee: Nanyang Technological University
    Inventors: Chuan Fa Liu, Junfeng Zhao
  • Patent number: 9309278
    Abstract: The present invention is directed to a method of alkylating a thiol group (R—S—H) or seleno group (R—Se—H) in a target molecule wherein the method comprises: reacting a target molecule comprising at least one thiol group with a compound of formula (I) or (II): wherein R is an acetyl group or any other acyl group or is a group comprising any one of: or wherein R in formula (II) can also be an alkyl group; and wherein R? is selected from a group consisting of a hydrogen, a methyl group and an ethyl group. In certain cases, the described methods may be used to install acetylated lysine analogs in target molecules (e.g., peptides, proteins).
    Type: Grant
    Filed: May 14, 2012
    Date of Patent: April 12, 2016
    Assignee: Nanyang Technological University
    Inventors: Chuan-Fa Liu, Fupeng Li
  • Publication number: 20150344519
    Abstract: The invention relates to the synthesis of peptides, proteins and related bioconjugates, and in particular, to such synthesis using a peptide ligation method whereby a C-terminal salicylaldehyde ester peptide is reacted with an aminoacyl-N-hydroxl peptide. The invention also relates to the synthesis of cyclic peptides, including serinyl- or threonyl-containing cyclic peptides. The invention further relates to a solid phase synthesis of C-terminal salicylaldehyde ester peptides.
    Type: Application
    Filed: February 6, 2013
    Publication date: December 3, 2015
    Inventors: Chuan Fa Liu, Junfeng Zhao
  • Patent number: 9145450
    Abstract: The invention relates to the field of compounds, especially peptides or polypeptides, that have thrombopoietic activity. The peptides and polypeptides of the invention may be used to increase platelets or platelet precursors (e.g., megakaryocytes) in a mammal.
    Type: Grant
    Filed: January 19, 2006
    Date of Patent: September 29, 2015
    Assignee: AMGEN INC.
    Inventors: Chuan-Fa Liu, Ulrich Feige, Janet C. Cheetham
  • Patent number: 9023957
    Abstract: The present invention generally relates to processes and methods of peptide and protein synthesis. The present invention also relates to specific compounds for use in such processes and methods. It is shown herein that peptides with a C-terminal tertiary N,N-bis(2-mercaptoethyl)-amide (BMEA) undergo N-to-S acyl transfer at weakly acidic pH to form a transient thioester which can be captured for direct ligation with a cysteinyl peptide. These C-terminal BMEA peptides are easily prepared with standard Fmoc solid-phase synthesis protocols, thus giving a very convenient access to the thioester components for native chemical ligation.
    Type: Grant
    Filed: July 6, 2011
    Date of Patent: May 5, 2015
    Assignee: Nanyang Technological University
    Inventor: Chuan Fa Liu
  • Publication number: 20150024431
    Abstract: The invention relates to the field of compounds, especially peptides or polypeptides, that have thrombopoietic activity. The peptides and polypeptides of the invention may be used to increase platelets or platelet precursors (e.g., megakaryocytes) in a mammal.
    Type: Application
    Filed: April 30, 2014
    Publication date: January 22, 2015
    Applicant: AMGEN INC.
    Inventors: Chuan-Fa Liu, Ulrich Feige, Janet C. Cheetham
  • Publication number: 20140316105
    Abstract: The present invention is directed to a method of alkylating a thiol group (R—S—H) or seleno group (R—Se—H) in a target molecule wherein the method comprises: reacting a target molecule comprising at least one thiol group with a compound of formula (I) or (II): wherein R is an acetyl group or any other acyl group or is a group comprising any one of: or wherein R in formula (II) can also be an alkyl group; and wherein R? is selected from a group consisting of a hydrogen, a methyl group and an ethyl group.
    Type: Application
    Filed: May 14, 2012
    Publication date: October 23, 2014
    Applicant: Nanyang Technological University
    Inventors: Chuan-Fa Liu, Fupeng Li
  • Patent number: 8859490
    Abstract: Disclosed is a peptide nucleic acid monomer as well as a corresponding peptide nucleic acid molecule. The monomer comprises a terminal amino group and a terminal group A. The terminal amino group and the terminal group A are connected by an aliphatic moiety. The main chain of this aliphatic moiety is free of groups that are charged under physiological conditions. The terminal group A is one of —COOH, —COOR3, —COX, —COSR3, —CN, —CONH2, —CONHR3, —CONR3, R4, with R3 and R4 being H or an aliphatic, alicyclic, aromatic, arylaliphatic or arylalicyclic group, and X being a halogen atom. The terminal amino group is substituted by an aliphatic group with a main chain of at least two carbon atoms and optionally 0 to about 2 heteroatoms selected from the group N, O, S, Se and Si. The main chain has a polar head group Z.
    Type: Grant
    Filed: September 3, 2008
    Date of Patent: October 14, 2014
    Assignee: Nanyang Technological University
    Inventors: Chuan Fa Liu, Yun Zeng, Xiao Wei Lu
  • Patent number: 8748571
    Abstract: The invention relates to the field of compounds, especially peptides or polypeptides, that have thrombopoietic activity. The peptides and polypeptides of the invention may be used to increase platelets or platelet precursors (e.g., megakaryocytes) in a mammal.
    Type: Grant
    Filed: October 20, 2011
    Date of Patent: June 10, 2014
    Assignee: Amgen Inc.
    Inventors: Chuan-Fa Liu, Ulrich Feige, Janet C. Cheetham
  • Patent number: 8618044
    Abstract: The invention relates to the field of compounds, especially peptides or polypeptides, that have thrombopoietic activity. The peptides and polypeptides of the invention may be used to increase platelets or platelet precursors (e.g., megakaryocytes) in a mammal.
    Type: Grant
    Filed: April 27, 2012
    Date of Patent: December 31, 2013
    Assignee: Amgen Inc.
    Inventors: Chuan-Fa Liu, Ulrich Feige, Janet C. Cheetham
  • Publication number: 20130131286
    Abstract: The present invention generally relates to processes and methods of peptide and protein synthesis. The present invention also relates to specific compounds for use in such processes and methods. It is shown herein that peptides with a C-terminal tertiary N,N-bis(2-mercaptoethyl)-amide (BMEA) undergo N-to-S acyl transfer at weakly acidic pH to form a transient thioester which can be captured for direct ligation with a cysteinyl peptide. These C-terminal BMEA peptides are easily prepared with standard Fmoc solid-phase synthesis protocols, thus giving a very convenient access to the thioester components for native chemical ligation.
    Type: Application
    Filed: July 6, 2011
    Publication date: May 23, 2013
    Applicant: NANYANG TECHNOLOGICAL UNIVERSITY
    Inventor: Chuan Fa Liu
  • Patent number: 8288351
    Abstract: The present invention relates to composition of matter involving bradykinin B1 receptor antagonist peptides conjugated to a univalent vehicle, including peptides conjugated to univalent PEG. These compositions can be used as therapeutics or prophylactics against diseases or conditions, such as inflammation or pain, linked to the bradykinin B1 receptor.
    Type: Grant
    Filed: April 8, 2008
    Date of Patent: October 16, 2012
    Assignee: Amgen Inc.
    Inventors: Gordon Ng, Yue-Sheng Li, Colin V. Gegg, Benny C. Askew, Jr., Thomas Storz, Yuelie Lu, Derin C. D'Amico, Mark A. Jarosinski, Chuan-Fa Liu, Qi Huang