Patents by Inventor Fred E. Cohen

Fred E. Cohen has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7495023
    Abstract: The present invention relates to thio semicarbazone and semicarbazone inhibitors of cysteine proteases and methods of using such compounds to prevent and treat protozoan infections such as trypanosomiasis, malaria and leishmaniasis. The compounds also find use in inhibiting cysteine proteases associated with carcinogenesis, including cathepsins B and L.
    Type: Grant
    Filed: March 18, 2005
    Date of Patent: February 24, 2009
    Assignee: The Regents of the University of California
    Inventors: Fred E. Cohen, Xiaohui Du, Chun Guo, James H. McKerrow
  • Patent number: 7462592
    Abstract: This invention relates compositions and methods for increasing the uptake of polynucleotides into cells. Specifically, the invention relates to vectors, targeting ligands, and polycationic agents. The polycationic agents are capable of (1) increasing the frequency of uptake of polynucleotides into a cell, (2) condensing polynucleotides; and (3) inhibiting serum and/or nuclease degradation of polynucleotides.
    Type: Grant
    Filed: October 22, 2002
    Date of Patent: December 9, 2008
    Assignee: Novartis Vaccines and Diagnostics, Inc.
    Inventors: Ronald N. Zuckermann, Nathalie Dubois-Stringfellow, Varavani Dwarki, Michael A. Innis, John E. Murphy, Fred E. Cohen, Tetsuo Uno
  • Patent number: 6897240
    Abstract: The present invention relates to thio semicarbazone and semicarbazone inhibitors of cysteine proteases and methods of using such compounds to prevent and treat protozoan infections such as trypanosomiasis, malaria and leishmaniasis. The compounds also find use in inhibiting cysteine proteases associated with carcinogenesis, including cathepsins B and L.
    Type: Grant
    Filed: May 8, 2003
    Date of Patent: May 24, 2005
    Assignee: The Regents of the University of California
    Inventors: Fred E. Cohen, Xiaohui Du, Chun Guo, James H. McKerrow
  • Publication number: 20040014801
    Abstract: The present invention relates to thio semicarbazone and semicarbazone inhibitors of cysteine proteases and methods of using such compounds to prevent and treat protozoan infections such as trypanosomiasis, malaria and leishmaniasis. The compounds also find use in inhibiting cysteine proteases associated with carcinogenesis, including cathepsins B and L.
    Type: Application
    Filed: May 8, 2003
    Publication date: January 22, 2004
    Applicant: The Regents of the University of California
    Inventors: Fred E. Cohen, Xiaohui Du, Chun Guo, James H. McKerrow
  • Publication number: 20030185890
    Abstract: This invention relates compositions and methods for increasing the uptake of polynucleotides into cells. Specifically, the invention relates to vectors, targeting ligands, and polycationic agents. The polycationic agents are capable of (1) increasing the frequency of uptake of polynucleotides into a cell, (2) condensing polynucleotides; and (3) inhibiting serum and/or nuclease degradation of polynucleotides.
    Type: Application
    Filed: October 22, 2002
    Publication date: October 2, 2003
    Inventors: Ronald N. Zuckermann, Nathalie Dubois-Stringfellow, Varavani Dwarki, Michael A. Innis, John E. Murphy, Fred E. Cohen, Tetsuo Uno
  • Patent number: 6617119
    Abstract: Assay methodology of the invention allows for: (1) determining if a sample contains a conformation of a protein which is associated with disease and the concentration and amount of such if present; (2) determining the amount of protease resistant disease related protein in a sample and by subtracting that amount from the total amount of disease related protein present determining the amount of protease sensitive disease protein in the sample; and (3) determining the strain and incubation time of a disease related protein by (i) relating the relative amounts of protease resistant and protease sensitive protein to known strains to thereby determine the strain; and (ii) plotting the concentration of protease sensitive protein on a graph of incubation time versus concentration of protease sensitive protein for known strains to predict the incubation time of an unknown strain of pathogenic protein in a sample.
    Type: Grant
    Filed: July 9, 2001
    Date of Patent: September 9, 2003
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Jiri G. Safar, Fred E. Cohen
  • Patent number: 6602672
    Abstract: DNA constructs are provided of epitope-tagged proteins or protein fragments which are conveniently purified with immunoaffinity chromatography such as epitope-tagged prion proteins (PrP). Transgenic animals expressing an epitope-tagged protein are provided, including transgenic animals expressing epitope-tagged PrP. Methods for distinguishing between the conformational shapes of a protein and a convenient method for isolating a tagged protein by immunoaffinity chromatographic methods are provided.
    Type: Grant
    Filed: September 25, 2000
    Date of Patent: August 5, 2003
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Glenn C. Telling, Fred E. Cohen, Michael R. Scott
  • Patent number: 6468986
    Abstract: This invention relates compositions and methods for increasing the uptake of polynucleotides into cells. Specifically, the invention relates to vectors, targeting ligands, and polycationic agents. The polycationic agents are capable of (1) increasing the frequency of uptake of polynucleotides into a cell, (2) condensing polynucleotides; and (3) inhibiting serum and/or nuclease degradation of polynucleotides.
    Type: Grant
    Filed: July 21, 2000
    Date of Patent: October 22, 2002
    Assignee: Chiron Corporation
    Inventors: Ronald N. Zuckermann, Nathalie Dubois-Stringfellow, Varavani Dwarki, Michael A. Innis, John E. Murphy, Fred E. Cohen, Tetsuo Uno
  • Patent number: 6365359
    Abstract: Molecules are disclosed that interact with the cellular components involved in conversion of PrPC to PrPSc. The molecules disclosed can be small molecules, peptides or protein analogs, e.g. analogs of PrPC. In one embodiment, these molecules interfere with prion formation and/or replication, e.g. by preventing interactions of proteins involved in a prion complex or by interfering with &bgr;-sheet formation. In another embodiment, the molecules of the invention promote PrPC conversion to PrPSc, e.g. by binding to PrPC and facilitating a conformational change from PrPC to PrPSc.
    Type: Grant
    Filed: November 12, 1999
    Date of Patent: April 2, 2002
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Fred E. Cohen, Thomas L. James, Kiyotoshi Kaneko
  • Publication number: 20020001817
    Abstract: Assay methodology of the invention allows for: (1) determining if a sample contains a conformation of a protein which is associated with disease and the concentration and amount of such if present; (2) determining the amount of protease resistant disease related protein in a sample and by subtracting that amount from the total amount of disease related protein present determining the amount of protease sensitive disease protein in the sample; and (3) determining the strain and incubation time of a disease related protein by (i) relating the relative amounts of protease resistant and protease sensitive protein to known strains to thereby determine the strain; and (ii) plotting the concentration of protease sensitive protein on a graph of incubation time versus concentration of protease sensitive protein for known strains to predict the incubation time of an unknown strain of pathogenic protein in a sample.
    Type: Application
    Filed: July 9, 2001
    Publication date: January 3, 2002
    Inventors: Stanley B. Prusiner, Jiri G. Safar, Fred E. Cohen
  • Patent number: 6251433
    Abstract: This invention relates compositions and methods for increasing the uptake of polynucleotides into cells. Specifically, the invention relates to vectors, targeting ligands, and polycationic agents. The polycationic agents are capable of (1) increasing the frequency of uptake of polynucleotides into a cell, (2) condensing polynucleotides; and (3) inhibiting serum and/or nuclease degradation of polynucleotides.
    Type: Grant
    Filed: August 13, 1997
    Date of Patent: June 26, 2001
    Assignee: Chiron Corporation
    Inventors: Ronald N. Zuckermann, Nathalie Dubois-Stringfellow, Varavani Dwarki, Michael A. Innis, John E. Murphy, Fred E. Cohen, Tetsuo Uno
  • Patent number: 6194421
    Abstract: Compositions and methods are disclosed for treating a patient infected with a metazoan parasite by inhibiting the enzymatic action of the metazoan parasite protease, wherein there is employed at least one compound of formula I A—X—B wherein A is a substituted or unsubstituted heteroaromatic ring system comprising one to three rings which binds to at least one of the S2, S1 and S1′ subsites; B is a substituted or unsubstituted homoaromatic ring system comprising one to three rings which binds to at least one of the S1′, S1 and S2 subsites; and X is —C═C—C(═O)—. These compositions and methods have particular utility in the treatment of schistosomiasis, malaria and other infectious diseases.
    Type: Grant
    Filed: December 30, 1997
    Date of Patent: February 27, 2001
    Assignee: The Regents of the University of California
    Inventors: Fred E. Cohen, James H. McKerrow, George L. Kenyon, Zhe Li, Xiaowu Chen, Baoqing Gong, Rongshi Li
  • Patent number: 6150583
    Abstract: DNA constructs are provided of epitope-tagged proteins or protein fragments which are conveniently purified with immunoaffinity chromatography such as epitope-tagged prion proteins (PrP). Transgenic animals expressing an epitope-tagged protein are provided, including transgenic animals expressing epitope-tagged PrP. Methods for distinguishing between the conformational shapes of a protein and a convenient method for isolating a tagged protein by immunoaffinity chromatographic methods are provided.
    Type: Grant
    Filed: February 26, 1998
    Date of Patent: November 21, 2000
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Glenn C. Telling, Fred E. Cohen, Michael R. Scott
  • Patent number: 6116390
    Abstract: Wheeled luggage having a container of soft fabric adapted for stacking with other similar containers such as suitcases or the like. The container has at least three wheels mounted on the bottom to provide stability when rolled over a supporting surface. A selected pair of wheels extend beyond the rear periphery of the container so that the container may be pulled in a tilted position as well as pulled along on the wheels. The non-selected wheel is swiveled so that the suitcase may be easily maneuvered when it is pulled along the supporting surface in a non-tilted position. A handle device may be either a leash-type strap detachably connected to a connection at one end of the container and/or a rigid handle may be telescopically arranged on the container with or without a pivot. A pouch may be provided on the container for insertably receiving and storing the strap.
    Type: Grant
    Filed: November 16, 1998
    Date of Patent: September 12, 2000
    Inventor: Fred E. Cohen
  • Patent number: 5962669
    Abstract: A protein designated Prion Protein Modulator Factor (PPMF) is disclosed which protein is an auxiliary factor in prion replication. PPMF is primarily characterized by its ability to bind to PrP.sup.C and facilitate a conformational change from PrP.sup.C to PrP.sup.Sc. A discontinuous epitope on PrP.sup.C comprising residues 172, 215 and 219 of human PrP.sup.C binds PPMF which is encoded by a nucleotide sequence derived from an organism selected from the group consisting of cow, sheep, mouse, hamster and human. In converting PrP.sup.C to PrP.sup.Sc the PPMF forms a PrP.sup.C /PrP.sup.Sc complex and is a rate limiting compound in the formation of that complex. Molecules, including antibodies, which bind PPMF or its epitope on PrP.sup.C are useful in the treatment of prion disease. Pharmacophores of the PrP.sup.C epitope are disclosed as are useful therapeutics and pharmacophores of the PPMF surface which binds PrP.sup.C. Animals resistant to prion disease are taught as are genes for producing such animals.
    Type: Grant
    Filed: June 2, 1997
    Date of Patent: October 5, 1999
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Fred E. Cohen, Thomas L. James, Kiyotoshi Kaneko
  • Patent number: 5878373
    Abstract: The present invention pertains to a system and method for predicting the protein fold of a target amino acid residue sequence of unknown protein structure. A target sequence is represented by a sequence of residue variability types that utilizes positional variability information present in an associated family of homologous sequences to the target sequence. The use of the positional variability information increases the likelihood of matching the target sequence with a known protein structure. In a first preferred embodiment, a target sequence is mapped into a sequence of residue variability types that are based on the solubility variability present between amino acid residues in homologous sequences. In a second preferred embodiment, each residue variability type represents a cluster of residue types at each position of aligned sets of homologous protein sequences. Each distinct cluster represents a pattern of residue variability at various positions in sets of homologous protein sequences.
    Type: Grant
    Filed: December 6, 1996
    Date of Patent: March 2, 1999
    Assignee: Regents of the University of California
    Inventors: Fred E. Cohen, Thomas R. Defay
  • Patent number: 5849695
    Abstract: The present invention relates polypeptide analogs which have agonist or antagonist or tissue selection properties relative to parathyroid hormone (PTH), parathyroid hormone-like protein (PLP) or parathyroid-related protein (PTHrP). The serine amino acid at position 3, the glutamine amino acid at position 6, the histidine amino acid at position 9 or combinations thereof are substituted by other natural or synthetic amino acids. Preferably, a human PTH fragment of about 34 amino acids is sufficient for pharmacological activity. These polypeptides are useful as agonists or antagonists in the treatment of a human being for disease conditions of cancer, osteoporosis, hypercalcemia, or hyperparathyroid disease conditions. The invention also concerns a method of performing certain assays using the modified peptides, and based on the results of the assays falling within preset limits, selecting those modified peptides which shall be useful in the treatment of disease conditions.
    Type: Grant
    Filed: January 13, 1993
    Date of Patent: December 15, 1998
    Assignee: The Regents of the University of California
    Inventors: Fred E. Cohen, Robert A. Nissenson, Gordon J. Strewler
  • Patent number: 5834593
    Abstract: The invention includes deleting codon segments from DNA expressing a native protein (e.g., PrP.sup.Sc) in order to obtain a shorter, soluble protein which mimics characteristics of an insoluble native (e.g., PrP.sup.Sc) protein. Soluble proteins of the invention are characterized by: (1) having less amino acids than the full length native protein; (2) having a higher degree of solubility than the native protein; (3) retaining the basic biological characteristics of the native protein such as (a) not being subject to enzymatic digestion and (b) causing disease. Soluble proteins of the invention are obtained by providing a DNA sequence which encodes a native protein and systematically removing codons, making copies of the shortened versions of DNA which are then expressed to provide the shortened proteins. The shortened proteins are then tested for solubility. Soluble proteins are then further tested to confirm that they retain the biological characteristics of the native protein.
    Type: Grant
    Filed: November 5, 1996
    Date of Patent: November 10, 1998
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Fred E. Cohen, Tamaki Muramoto
  • Patent number: 5789655
    Abstract: DNA constructs are provided of epitope-tagged proteins or protein fragments which are conveniently purified with immunoaffinity chromatography such as epitope-tagged prion proteins (PrP). Transgenic animals expressing an epitope-tagged protein are provided, including transgenic animals expressing epitope-tagged PrP. Methods for distinguishing between the conformational shapes of a protein and a convenient method for isolating a tagged protein by immunoaffinity chromatographic methods are provided.
    Type: Grant
    Filed: June 6, 1996
    Date of Patent: August 4, 1998
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Glenn C. Telling, Fred E. Cohen, Michael R. Scott
  • Patent number: 5750361
    Abstract: Prion protein (PrP) peptides having at least one .alpha.-helical domain and forming a random coil conformation in aqueous solutions bind cellular PrP (PrP.sup.C) to form a complex having characteristics of the scrapie isoform (PrP.sup.Sc). Methods for screening compounds able to inhibit or decrease the binding of PrP peptides to PrP.sup.C are disclosed, as well as methods for assaying PrP.sup.Sc.
    Type: Grant
    Filed: November 2, 1995
    Date of Patent: May 12, 1998
    Assignee: The Regents of the University of California
    Inventors: Stanley B. Prusiner, Kivotoshi Kaneko, Fred E. Cohen