Patents by Inventor Giulia C. Kennedy

Giulia C. Kennedy has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • METHODS AND COMPOSITIONS FOR CLASSIFICATION OF SAMPLES
    Publication number: 20200143944
    Abstract: Disclosed herein are kits, compositions, and methods relating to the classification of samples. Methods disclosed herein can be used to identify sample mix-ups. Methods disclosed herein can also be used to diagnose conditions or to support treatment-related decisions.
    Type: Application
    Filed: September 4, 2019
    Publication date: May 7, 2020
    Inventors: Jonathan I. WILDE, Darya CHUDOVA, Giulia C. KENNEDY
  • METHODS AND SYSTEMS FOR DETECTING USUAL INTERSTITIAL PNEUMONIA
    Publication number: 20190330680
    Abstract: The present disclosure provides systems, methods, and classifiers for differentiating between samples as usual interstitial pneumonia (UIP) or non-UIP.
    Type: Application
    Filed: March 5, 2019
    Publication date: October 31, 2019
    Inventors: Giulia C. Kennedy, Jing Huang, Yoonha Choi, Daniel Pankratz, Patric Sean Walsh
  • Methods and compositions for classification of samples
    Patent number: 10446272
    Abstract: Disclosed herein are kits, compositions, and methods relating to the classification of samples. Methods disclosed herein can be used to identify sample mix-ups. Methods disclosed herein can also be used to diagnose conditions or to support treatment-related decisions.
    Type: Grant
    Filed: September 12, 2017
    Date of Patent: October 15, 2019
    Assignee: Veracyte, Inc.
    Inventors: Jonathan I. Wilde, Darya Chudova, Giulia C. Kennedy
  • Algorithms for Disease Diagnostics
    Publication number: 20190252039
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: March 14, 2019
    Publication date: August 15, 2019
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE
  • ALGORITHMS FOR DISEASE DIAGNOSTICS
    Publication number: 20190172551
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: January 15, 2019
    Publication date: June 6, 2019
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE
  • ALGORITHMS FOR DISEASE DIAGNOSTICS
    Publication number: 20190100809
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: October 30, 2018
    Publication date: April 4, 2019
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Jonathan I. WILDE, James G. VEITCH, Bonnie H. ANDERSON, Eric T. WANG
  • Methods for processing or analyzing a sample of thyroid tissue
    Patent number: 10236078
    Abstract: The present disclosure provides methods for processing or analyzing a sample of tissue of a subject, to generate a classification of the sample of tissue as positive or negative for thyroid cancer. The present disclosure also provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results.
    Type: Grant
    Filed: July 27, 2017
    Date of Patent: March 19, 2019
    Assignee: Veracyte, Inc.
    Inventors: Giulia C. Kennedy, Darya I. Chudova, Eric T. Wang, Jonathan I. Wilde
  • ALGORITHMS FOR DISEASE DIAGNOSTICS
    Publication number: 20190080047
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: October 30, 2018
    Publication date: March 14, 2019
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE
  • METHODS AND COMPOSITIONS THAT UTILIZE TRANSCRIPTOME SEQUENCING DATA IN MACHINE LEARNING-BASED CLASSIFICATION
    Publication number: 20180349548
    Abstract: Provided herein are methods and systems for producing a modified biological dataset by flagging or removing a nucleic acid sequence from the biological dataset that is assigned a noise-call to produce the modified biological dataset. The noise-call may be based on comparing a gene expression level, sequence information, or a combination thereof with a nucleic acid sequence of a control sample.
    Type: Application
    Filed: March 23, 2018
    Publication date: December 6, 2018
    Inventors: P. Sean Walsh, Giulia C. Kennedy, Kevin Travers, Zhanzhi Hu, Su Yeon Kim, Jing Huang
  • Methods for processing or analyzing sample of thyroid tissue
    Patent number: 10114924
    Abstract: The present disorders disclosure provides method for processing or analyzing a sample of thyroid tissue of a subject, to generate a classification of the sample of thyroid tissue as positive or negative for thyroid cancer. The present disclosure also provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results, which may be used to provide a diagnosis.
    Type: Grant
    Filed: December 21, 2017
    Date of Patent: October 30, 2018
    Assignee: Veracyte, Inc.
    Inventors: Giulia C. Kennedy, Darya I. Chudova, Eric T. Wang, Jonathan I. Wilde, Bonnie H. Anderson, Hui Wang, Moraima Pagan, Nusrat Rabbee
  • ALGORITHMS FOR DISEASE DIAGNOSTICS
    Publication number: 20180157789
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: December 21, 2017
    Publication date: June 7, 2018
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE, Bonnie H. ANDERSON, Hui WANG, Moraima PAGAN, Nusrat RABBEE
  • Algorithms for Disease Diagnostics
    Publication number: 20180127832
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: September 12, 2017
    Publication date: May 10, 2018
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE
  • METHODS AND COMPOSITIONS FOR CLASSIFICATION OF SAMPLES
    Publication number: 20180122508
    Abstract: Disclosed herein are kits, compositions, and methods relating to the classification of samples. Methods disclosed herein can be used to identify sample mix-ups. Methods disclosed herein can also be used to diagnose conditions or to support treatment-related decisions.
    Type: Application
    Filed: September 12, 2017
    Publication date: May 3, 2018
    Inventors: Jonathan I. WILDE, Darya CHUDOVA, Giulia C. KENNEDY
  • METHODS AND COMPOSITIONS FOR SAMPLE IDENTIFICATION
    Publication number: 20180068058
    Abstract: Compositions and methods are provided to provide an expression signature for a sample, where an alternative splicing index and profile are determined for the sample based on variations in the splicing of messenger RNA for at least one gene in the sample.
    Type: Application
    Filed: June 9, 2017
    Publication date: March 8, 2018
    Inventors: Diana ABDUEVA, Giulia C. KENNEDY, P. Sean WALSH
  • METHODS FOR ASSESSING THE RISK OF DISEASE OCCURRENCE OR RECURRENCE USING EXPRESSION LEVEL AND SEQUENCE VARIANT INFORMATION
    Publication number: 20180016642
    Abstract: Provided herein are methods, systems and kits for stratification of risk of disease occurrence of a sample obtained from a subject by combining two or more feature spaces to improve individualization of subject management.
    Type: Application
    Filed: September 1, 2017
    Publication date: January 18, 2018
    Inventors: Giulia C. KENNEDY, Moraima PAGAN, Chu-Fang LIN, Jing HUANG, P. Sean WALSH, Hajime MATSUZAKI, Kevin TRAVERS, Su Yeon KIM
  • Algorithms for disease diagnostics
    Patent number: 9856537
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Grant
    Filed: September 23, 2016
    Date of Patent: January 2, 2018
    Assignee: VERACYTE, INC.
    Inventors: Giulia C. Kennedy, Darya I. Chudova, Eric T. Wang, Jonathan I. Wilde
  • SYSTEMS AND METHODS OF DIAGNOSING IDIOPATHIC PULMONARY FIBROSIS ON TRANSBRONCHIAL BIOPSIES USING MACHINE LEARNING AND HIGH DIMENSIONAL TRANSCRIPTIONAL DATA
    Publication number: 20170335396
    Abstract: The present invention provides systems, methods, and classifiers for differentiating between samples as usual interstitial pneumonia (UIP) or non-UIP.
    Type: Application
    Filed: November 5, 2015
    Publication date: November 23, 2017
    Inventors: Giulia C. KENNEDY, James DIGGANS, Jing HUANG, Yoonha CHOI, Su Yeon KIM, Daniel PANKRATZ, Moraima PAGAN
  • ALGORITHMS FOR DISEASE DIAGNOSTICS
    Publication number: 20170329894
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: July 27, 2017
    Publication date: November 16, 2017
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE
  • METHODS AND COMPOSITIONS OF MOLECULAR PROFILING FOR DISEASE DIAGNOSTICS
    Publication number: 20170145513
    Abstract: The present invention relates to compositions, kits, and methods for molecular profiling and cancer diagnostics, including but not limited to gene expression product markers, alternative exon usage markers, and DNA polymorphisms associated with cancer. In particular, the present invention provides molecular profiles associated with thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: June 17, 2016
    Publication date: May 25, 2017
    Inventors: Giulia C. Kennedy, Bonnie H. Anderson, Darya I. Chudova, Eric T. Wang, Hui Wang, Moraima Pagan, Nusrat Rabbee, Jonathan I. Wilde
  • Algorithms for Disease Diagnostics
    Publication number: 20170145514
    Abstract: The present invention relates to compositions and methods for molecular profiling and diagnostics for genetic disorders and cancer, including but not limited to gene expression product markers associated with cancer or genetic disorders. In particular, the present invention provides algorithms and methods of classifying cancer, for example, thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.
    Type: Application
    Filed: September 23, 2016
    Publication date: May 25, 2017
    Inventors: Giulia C. KENNEDY, Darya I. CHUDOVA, Eric T. WANG, Jonathan I. WILDE