Patents by Inventor Gregory D. Davis

Gregory D. Davis has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20170191082
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: March 10, 2017
    Publication date: July 6, 2017
    Inventors: Fuqiang CHEN, Gregory D. DAVIS
  • Publication number: 20170073705
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: November 3, 2016
    Publication date: March 16, 2017
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20170051354
    Abstract: The present disclosure provides genetically engineered cell lines comprising chromosomally integrated synthetic sequences having predetermined epigenetic modifications, wherein a predetermined epigenetic modification is correlated with a known diagnosis, prognosis or level of sensitivity to a disease treatment. Also provided are kits comprising said epigenetically modified synthetic nucleic acids or cells comprising said epigenetically modified synthetic nucleic acids that can be used as reference standards for predicting responsiveness to therapeutic treatments, diagnosing diseases, or predicting disease prognosis.
    Type: Application
    Filed: April 24, 2015
    Publication date: February 23, 2017
    Applicant: SIGMA-ALDRICH CO. LLC
    Inventors: Gregory D. DAVIS, Qiaohua KANG
  • Publication number: 20160376610
    Abstract: Fusion protein comprising a programmable DNA modification protein and a cell cycle regulated protein, and methods of using the fusion protein to modify chromosomal sequences and/or regulate gene expression in a cell cycle dependent manner.
    Type: Application
    Filed: June 24, 2016
    Publication date: December 29, 2016
    Inventors: Gregory D. Davis, Qingzhou Ji, Carol A. Kreader
  • Patent number: 9512444
    Abstract: The present invention provides methods and kits for editing specific chromosomal sequences in cells. In particular, targeting endonucleases and single-stranded nucleic acids are used to edit the chromosomal sequence.
    Type: Grant
    Filed: July 22, 2011
    Date of Patent: December 6, 2016
    Assignee: Sigma-Aldrich Co. LLC
    Inventors: Fuqiang Chen, Shondra M. Pruett-Miller, Gregory D. Davis
  • Publication number: 20160298133
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298136
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298132
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298134
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298125
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298135
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298138
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160298137
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: June 21, 2016
    Publication date: October 13, 2016
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20160017366
    Abstract: The present invention provides RNA-guided endonucleases, which are engineered for expression in eukaryotic cells or embryos, and methods of using the RNA-guided endonuclease for targeted genome modification in eukaryotic cells or embryos. Also provided are fusion proteins, wherein each fusion protein comprises a CRISPR/Cas-like protein or fragment thereof and an effector domain. The effector domain can be a cleavage domain, an epigenetic modification domain, a transcriptional activation domain, or a transcriptional repressor domain. Also provided are methods for using the fusion proteins to modify a chromosomal sequence or regulate expression of a chromosomal sequence.
    Type: Application
    Filed: December 5, 2013
    Publication date: January 21, 2016
    Applicant: SIGMA-ALDRICH CO. LLC
    Inventors: Fuqiang CHEN, Gregory D. DAVIS, Qiaohua KANG, Scott W. KNIGHT
  • Publication number: 20130137180
    Abstract: The present invention provides methods and kits for editing specific chromosomal sequences in cells. In particular, targeting endonucleases and single-stranded nucleic acids are used to edit the chromosomal sequence.
    Type: Application
    Filed: July 22, 2011
    Publication date: May 30, 2013
    Applicant: SIGMA ALDRICH CO, LLC
    Inventors: Fuqiang Chen, Shondra M. Pruett-Miller, Gregory D. Davis
  • Patent number: 6383755
    Abstract: Methods are provided for evaluating the fidelity of a given set of polymerase chain reaction conditions. In the subject methods, a template polydeoxyribonucleotide is amplified under the to be evaluated polymerase chain reaction conditions, where the template polydeoxyribonucleotide includes a pseudo restriction endonuclease restriction site. The resultant amplified product population is then contacted with the corresponding restriction endonuclease and resultant cleavage products, if any, are detected. The fidelity of the polymerase chain reaction conditions is then derived from the detected cleavage products (or absence thereof). Also provided are kits for use in practicing the subject methods. The subject methods are suited for determining the fidelity of a given polymerase under PCR conditions, and are particularly suited for determining the fidelity of a thermostable polymerase under PCR conditions.
    Type: Grant
    Filed: September 6, 2000
    Date of Patent: May 7, 2002
    Assignee: Clontech Laboratories, Inc.
    Inventors: Gregory D. Davis, Helmut Wurst
  • Patent number: 6207420
    Abstract: A fusion sequence having a carrier protein which is preferably an E. coli protein having a predicted solubility probability of at least 90% fused to a target heterologous peptide or protein, and a host cell (especially E. coli) transformed with, or having integrated into its genome, a DNA sequence comprising a DNA encoding a carrier protein as defined herein fused to the DNA sequence of a selected heterologous peptide or protein. This fusion sequence is under the control of an expression control sequence capable of directing the expression of a fusion protein in the cell. An objective of the present invention is to improve the purification process of recombinant fusion proteins by avoiding the initial expression of these fusion proteins in E. coli as insoluble inclusion bodies.
    Type: Grant
    Filed: November 23, 1999
    Date of Patent: March 27, 2001
    Assignee: The Board of Regents of the University of Oklahoma
    Inventors: Roger G. Harrison, Gregory D. Davis
  • Patent number: 5989868
    Abstract: A fusion sequence having a carrier protein which is preferably an E. coli protein having a predicted solubility probability of at least 90% fused to a target heterologous peptide or protein, and a host cell (especially E. coli) transformed with, or having integrated into its genome, a DNA sequence comprising a DNA encoding a carrier protein as defined herein fused to the DNA sequence of a selected heterologous peptide or protein. This fusion sequence is under the control of an expression control sequence capable of directing the expression of a fusion protein in the cell. An objective of the present invention is to improve the purification process of recombinant fusion proteins by avoiding the initial expression of these fusion proteins in E. coli as insoluble inclusion bodies.
    Type: Grant
    Filed: September 8, 1998
    Date of Patent: November 23, 1999
    Assignee: The Board of Regents of the University of Oklahoma
    Inventors: Roger G. Harrison, Gregory D. Davis
  • Patent number: 4980989
    Abstract: A crab cage assembly includes a cage unit that has several one-way openings defined therethrough so that a crab can enter the cage but will not be able to exit that cage once inside. The one-way openings are formed by cantilever wires that extend into the cage. A signal system is activated when a captured crab pulls on a bait-like element located in the cage, and signals a crabber that a crab has been captured. The signal system includes either a bell or a special transmitter that emits a signal characteristic of the particular cage assembly so that a crabber working several cages will know which cage contains a crab.
    Type: Grant
    Filed: January 16, 1990
    Date of Patent: January 1, 1991
    Inventor: Gregory D. Davis