Patents by Inventor Jacob Rosenblum Rubens

Jacob Rosenblum Rubens has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20250114406
    Abstract: Therapeutic chondrisome and mitoplast compositions and related methods are described.
    Type: Application
    Filed: January 4, 2024
    Publication date: April 10, 2025
    Inventors: Geoffrey A. Von Maltzahn, John Miles Milwid, Michael Travis Mee, Jacob Rosenblum Rubens, David Chess, Kyle Marvin Trudeau, Kiana Mahdaviani, Jacob Feala, James D. Mccully, Douglas B. Cowan
  • Publication number: 20250027107
    Abstract: The disclosure provides, for example, single stranded, covalently closed DNA that does not form a double stranded structure longer than 100 base pairs. The ssDNA may encode an effector sequence, for instance a therapeutic protein. The ssDNA may comprise a nuclear targeting sequence (NTS). In some embodiments, the ssDNA shows decreased activation of the innate immune system compared to an otherwise similar dsDNA.
    Type: Application
    Filed: October 18, 2022
    Publication date: January 23, 2025
    Inventors: Alexandra Rachael Sneider, Jacob Rosenblum Rubens, Narahari Subbanna Pujar, Molly Krisann Gibson, Benjamin Andrew Portney, Geoffrey A. von Maltzahn, Camilo Ayala Breton
  • Publication number: 20240417757
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Application
    Filed: August 14, 2024
    Publication date: December 19, 2024
    Inventors: Anne Helen Bothmer, Cecilia Giovanna Silvia Cotta-Ramusino, William Edward Salomon, Jacob Rosenblum Rubens, Robert James Citorik, Zi Jun Wang, Kyusik Kim, Randi Michelle Kotlar, Ananya Ray, Robert Charles Altshuler, Sandeep Kumar, Nathaniel Roquet, Barrett Ethan Steinberg
  • Patent number: 12157898
    Abstract: Methods and compositions for modulating a target genome are disclosed. This disclosure relates to novel compositions, systems and methods for altering a genome at one or more locations in a host cell, tissue or subject, in vivo or in vitro. In particular, the invention features compositions, systems and methods for inserting, altering, or deleting sequences of interest in a host genome.
    Type: Grant
    Filed: July 19, 2023
    Date of Patent: December 3, 2024
    Assignee: Flagship Pioneering Innovations VI, LLC
    Inventors: Anne Helen Bothmer, Cecilia Giovanna Silvia Cotta-Ramusino, William Edward Salomon, Jacob Rosenblum Rubens, Robert James Citorik, Zi Jun Wang, Kyusik Kim, Randi Michelle Kotlar, Ananya Ray, Robert Charles Altshuler, Sandeep Kumar, Nathaniel Roquet, Barrett Ethan Steinberg
  • Publication number: 20240390427
    Abstract: Therapeutic chondrisome compositions and related methods are described.
    Type: Application
    Filed: January 3, 2024
    Publication date: November 28, 2024
    Inventors: Geoffrey A. von Maltzahn, John Miles Milwid, Michael Travis Mee, Jacob Rosenblum Rubens, David Chess, Kyle Marvin Trudeau, Kiana Mahdaviani, Jacob Feala, James D. McCully, Douglas B. Cowan
  • Publication number: 20240374759
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Application
    Filed: September 7, 2022
    Publication date: November 14, 2024
    Inventors: Robert Charles Altshuler, Anne Helen Bothmer, Robert James Citorik, Cecilia Giovanna Silvia Cotta-Ramusino, Kyusik Kim, Randi Michelle Kotlar, Sandeep Kumar, Ananya Ray, Nathaniel Roquet, Jacob Rosenblum Rubens, William Edward Salomon, Barrett Ethan Steinberg, Zi Jun Wang, Ersin Akinci
  • Publication number: 20240318170
    Abstract: Methods and compositions for modulating a target genome are disclosed. The composition may comprise a first RNA encoding a polypeptide comprising a retrotransposase reverse transcriptase domain and a retrotransposase endonuclease domain. The composition may also comprise a second RNA comprising a sequence that binds the polypeptide and a heterologous object sequence. The composition may insert the sequence of the heterologous object sequence into a target DNA.
    Type: Application
    Filed: April 1, 2024
    Publication date: September 26, 2024
    Inventors: Jacob Rosenblum Rubens, Geoffrey A. von Maltzahn, Robert James Citorik, Barrett Ethan Steinberg, Donghui Li, William Edward Salomon
  • Publication number: 20240293582
    Abstract: This disclosure provides, for example, double stranded DNA (dsDNA) molecules comprising a chemically modified cytosine nucleotide. In some embodiments, the dsDNA molecules comprise a therapeutic payload sequence. In some embodiments, the dsDNA molecules are resistant to endonuclease digestion and/or resistant to immune sensor recognition, and supports expression of a therapeutic payload encoded in the dsDNA molecules. The disclosure also provides, for example, pharmaceutical compositions comprising dsDNA molecules comprising a chemically modified cytosine nucleotide.
    Type: Application
    Filed: February 16, 2024
    Publication date: September 5, 2024
    Inventors: Jacob Rosenblum Rubens, Eric Christopher Keen, Alexandra Rachael Sneider, Jeffrey Tsao, Camilo Ayala Breton, Carl Wayne Brown, III, Samuel Alves-Czachor, Edward Matthew Kennedy
  • Publication number: 20240285805
    Abstract: This disclosure provides, for example, double stranded DNA (dsDNA) molecules comprising a chemically modified uridine nucleotide. In some embodiments, the dsDNA molecules comprise a therapeutic payload sequence. In some embodiments, the dsDNA molecules are resistant to endonuclease digestion and/or resistant to immune sensor recognition, and supports expression of a therapeutic payload encoded in the dsDNA molecules. The disclosure also provides, for example, pharmaceutical compositions comprising dsDNA molecules comprising a chemically modified uridine nucleotide.
    Type: Application
    Filed: February 16, 2024
    Publication date: August 29, 2024
    Inventors: Jacob Rosenblum Rubens, Eric Christopher Keen, Alexandra Rachael Sneider, Jeffrey Tsao, Camilo Ayala Breton, Carl Wayne Brown, III, Samuel Alves-Czachor, Edward Matthew Kennedy
  • Patent number: 12065669
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Grant
    Filed: September 14, 2023
    Date of Patent: August 20, 2024
    Assignee: Flagship Pioneering Innovations VI, LLC
    Inventors: Stephen Hoyt Cleaver, Barrett Ethan Steinberg, Jacob Rosenblum Rubens, Robert James Citorik, William Edward Salomon, Zi Jun Wang
  • Publication number: 20240263153
    Abstract: Methods and compositions for modulating a target genome are disclosed. For instance, the disclosure provides site-specific recombinases (e.g., serine recombinases, e.g., serine integrases) capable of directing insertion of an insert DNA, or portion thereof, into a desired site in a target genome.
    Type: Application
    Filed: May 25, 2022
    Publication date: August 8, 2024
    Inventors: Jacob Rosenblum Rubens, Robert James Citorik, Yanfang Fu, Cecilia Giovanna Silvia Cotta-Ramusino, Zi Jun Wang, William Edward Salomon
  • Patent number: 12037602
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Grant
    Filed: September 14, 2023
    Date of Patent: July 16, 2024
    Assignee: Flagship Pioneering Innovations VI, LLC
    Inventors: Stephen Hoyt Cleaver, Barrett Ethan Steinberg, Jacob Rosenblum Rubens, Robert James Citorik, William Edward Salomon, Zi Jun Wang
  • Patent number: 12031129
    Abstract: Methods and compositions for modulating a target genome are disclosed. The composition may comprise a first RNA encoding a polypeptide comprising a retrotransposase reverse transcriptase domain and a retrotransposase endonuclease domain. The composition may also comprise a second RNA comprising a sequence that binds the polypeptide and a heterologous object sequence. The composition may insert the sequence of the heterologous object sequence into a target DNA.
    Type: Grant
    Filed: December 6, 2019
    Date of Patent: July 9, 2024
    Assignee: Flagship Pioneering Innovations VI, LLC
    Inventors: Jacob Rosenblum Rubens, Geoffrey A. von Maltzahn, Robert James Citorik, Barrett Ethan Steinberg, Donghui Li, William Edward Salomon
  • Publication number: 20240200104
    Abstract: Methods and compositions for altering a genome at one or more locations in a host cell, tissue, or subject are disclosed.
    Type: Application
    Filed: March 18, 2022
    Publication date: June 20, 2024
    Inventors: Robert James Citorik, William Edward Salomon, Zi Jun Wang, Jacob Rosenblum Rubens, Benjamin Harris Weinberg
  • Publication number: 20240108642
    Abstract: Preparations of glycan therapeutics, pharmaceutical compositions, dietary supplements and medical foods thereof are provided, and methods of using said glycan therapeutics, e.g. in cancer therapy.
    Type: Application
    Filed: December 11, 2023
    Publication date: April 4, 2024
    Inventors: Geoffrey A. VON MALTZAHN, Yvonne J. Yamanaka, Jared Silverman, John Miles Milwid, Jacob Rosenblum Rubens, John M. Gerema
  • Publication number: 20240084333
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Application
    Filed: September 14, 2023
    Publication date: March 14, 2024
    Inventors: Stephen Hoyt Cleaver, Barrett Ethan Steinberg, Jacob Rosenblum Rubens, Robert James Citorik, William Edward Salomon, Zi Jun Wang
  • Publication number: 20240076698
    Abstract: Methods and compositions for modulating a target genome are disclosed.
    Type: Application
    Filed: September 14, 2023
    Publication date: March 7, 2024
    Inventors: Stephen Hoyt Cleaver, Barrett Ethan Steinberg, Jacob Rosenblum Rubens, Robert James Citorik, William Edward Salomon, Zi Jun Wang
  • Patent number: 11903975
    Abstract: Therapeutic chondrisome and mitoplast compositions and related methods are described.
    Type: Grant
    Filed: November 30, 2016
    Date of Patent: February 20, 2024
    Assignees: FLAGSHIP PIONEERING INNOVATIONS V, INC., The Children's Medical Center Corporation
    Inventors: Geoffrey A. von Maltzahn, John Miles Milwid, Michael Travis Mee, Jacob Rosenblum Rubens, David Chess, Kyle Marvin Trudeau, Kiana Mahdaviani, Jacob Feala, James D. McCully, Douglas B. Cowan
  • Patent number: 11903974
    Abstract: Therapeutic chondrisome compositions and related methods are described.
    Type: Grant
    Filed: November 30, 2016
    Date of Patent: February 20, 2024
    Assignees: FLAGSHIP PIONEERING INNOVATIONS V, INC., The Children's Medical Center Corporation
    Inventors: Geoffrey A. von Maltzahn, John Miles Milwid, Michael Travis Mee, Jacob Rosenblum Rubens, David Chess, Kyle Marvin Trudeau, Kiana Mahdaviani, Jacob Feala, James D. McCully, Douglas B. Cowan
  • Publication number: 20240042058
    Abstract: The invention provides, inter alia, systems and associated methods, for modifying DNA, such as the genome of a cell. The systems, in certain embodiments, encompass one or more tissue-specific expression-control sequences, such as promoters and microRNA binding sites in addition to a transposase (or a nucleic acid encoding the same) and a template nucleic acid comprising a sequence to be inserted into the genome of a cell, tissue, or subject.
    Type: Application
    Filed: February 25, 2022
    Publication date: February 8, 2024
    Inventors: Robert James Citorik, Jacob Rosenblum Rubens, William Edward Salomon, Zi Jun Wang