Patents by Inventor Jerzy Olejnik

Jerzy Olejnik has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Methods And Compositions For Incorporating Nucleotides
    Publication number: 20190119315
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable Media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Application
    Filed: November 16, 2018
    Publication date: April 25, 2019
    Inventors: Steven Gordon, Jerzy Olejnik
  • Modular Flow Cells And Methods Of Sequencing
    Publication number: 20190071722
    Abstract: Modular flow cells, devices with modular flow cells, and methods of sequencing using modular flow cells, as well as systems and kits including modular flow cells, are described, permitting sequencing wherein less than the full capacity for sequencing is desired.
    Type: Application
    Filed: November 6, 2018
    Publication date: March 7, 2019
    Inventors: Jerzy Olejnik, Dirk Zimmermann
  • Methods and devices for sequencing nucleic acids in smaller batches
    Patent number: 10222349
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. A plurality of smaller flow cells is employed, each with a relatively small area to be imaged, in order to provide greater flexibility and efficiency.
    Type: Grant
    Filed: July 21, 2017
    Date of Patent: March 5, 2019
    Assignee: QIAGEN SCIENCES, LLC
    Inventors: Steven Gordon, Thomas Hagerott, Edmund Golaski, Jerzy Olejnik
  • Methods and compositions for incorporating nucleotides
    Patent number: 10174066
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: April 5, 2017
    Date of Patent: January 8, 2019
    Assignee: QIAGEN WALTHAM, Inc.
    Inventors: Steven Gordon, Jerzy Olejnik
  • Hydroxymethyl linkers for labeling nucleotides
    Patent number: 10161000
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: April 20, 2016
    Date of Patent: December 25, 2018
    Assignee: QIAGEN WALTHAM, INC.
    Inventor: Jerzy Olejnik
  • Analyte enrichment methods and compositions
    Patent number: 10160995
    Abstract: Methods and compositions for enriching a population of particles containing an analyte are disclosed. In one embodiment, enrichment beads are used that are larger in size than the beads used for amplification. A separation device is employed that can retain larger beads with bound amplified beads. The technique finds many uses, including enriching for beads with clonally amplified template, which can be used in a variety of assays, including nucleic acid sequencing.
    Type: Grant
    Filed: April 29, 2014
    Date of Patent: December 25, 2018
    Assignee: QIAGEN WALTHAM, INC.
    Inventors: Jerzy Olejnik, Steven Gordon, Martina Werner
  • Modular flow cells and methods of sequencing
    Patent number: 10150994
    Abstract: Modular flow cells, devices with modular flow cells, and methods of sequencing using modular flow cells, as well as systems and kits including modular flow cells, are described, permitting sequencing wherein less than the full capacity for sequencing is desired.
    Type: Grant
    Filed: July 20, 2016
    Date of Patent: December 11, 2018
    Assignees: Qiagen Waltham, Inc., Qiagen Instruments AG
    Inventors: Jerzy Olejnik, Dirk Zimmermann
  • METHODS OF USING NUCLEOTIDE ANALOGUES
    Publication number: 20180274025
    Abstract: The present invention provides methods, compositions, mixtures and kits utilizing deoxynucleoside triphosphates comprising a 3?-O position capped by a group comprising methylenedisulfide as a cleavable protecting group and a detectable label reversibly connected to the nucleobase of said deoxynucleoside. Such compounds provide new possibilities for future sequencing technologies, including but not limited to Sequencing by Synthesis.
    Type: Application
    Filed: March 22, 2018
    Publication date: September 27, 2018
    Inventors: Mong Sano Marma, Jerzy Olejnik, Ilia Korboukh
  • Methods And Compositions For Incorporating Nucleotides
    Publication number: 20180251832
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Application
    Filed: March 5, 2018
    Publication date: September 6, 2018
    Inventors: Steven Gordon, Jerzy Olejnik
  • NUCLEOTIDE ANALOGUES
    Publication number: 20180208774
    Abstract: The present invention provides methods, compositions, mixtures and kits utilizing deoxynucleoside triphosphates comprising a 3?-O position capped by a group comprising methylenedisulfide as a cleavable protecting group and a detectable label reversibly connected to the nucleobase of said deoxynucleoside. Such compounds provide new possibilities for future sequencing technologies, including but not limited to Sequencing by Synthesis.
    Type: Application
    Filed: March 22, 2018
    Publication date: July 26, 2018
    Inventors: Mong Sano Marma, Jerzy Olejnik, Ilia Korboukh
  • Methods and compositions for sequencing nucleic acids using charge
    Patent number: 10017816
    Abstract: The invention relates to methods and compositions, and systems for determining the identity of nucleic acids in nucleotide sequences, and in particular, sequences that contain consecutive repeats of a particular base. For example, a consecutive repeat of a particular base may be identified by a charged ion detection (e.g., hydrogen ion detection).
    Type: Grant
    Filed: April 11, 2016
    Date of Patent: July 10, 2018
    Assignee: INTELLIGENT BIO-SYSTEMS, INC.
    Inventors: Steven Gordon, Jerzy Olejnik
  • Methods and solutions for inhibiting undesired cleaving of labels
    Patent number: 9926595
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: March 22, 2017
    Date of Patent: March 27, 2018
    Assignee: INTELLIGENT BIO-SYSTEMS, INC.
    Inventors: Jerzy Olejnik, Evan Guggenheim, Visalakshi Meyyappan
  • Methods and compositions for incorporating nucleotides
    Patent number: 9909174
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: July 20, 2016
    Date of Patent: March 6, 2018
    Assignee: Intelligent Bio-Systems, Inc.
    Inventors: Steven Gordon, Jerzy Olejnik
  • Methods and compositions for base calling nucleic acids
    Patent number: 9879309
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: April 5, 2013
    Date of Patent: January 30, 2018
    Assignee: INTELLIGENT BIO-SYSTEMS, INC.
    Inventors: Steven Gordon, Phillip A Veatch, Jerzy Olejnik
  • METHODS AND DEVICES FOR SEQUENCING NUCLEIC ACIDS IN SMALLER BATCHES
    Publication number: 20180017525
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. A plurality of smaller flow cells is employed, each with a relatively small area to be imaged, in order to provide greater flexibility and efficiency.
    Type: Application
    Filed: July 21, 2017
    Publication date: January 18, 2018
    Inventors: Steven Gordon, Thomas Hagerott, Edmund Golaski, Jerzy Olejnik
  • Methods and devices for sequencing nucleic acids in smaller batches
    Patent number: 9791409
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. A plurality of smaller flow cells is employed, each with a relatively small area to be imaged, in order to provide greater flexibility and efficiency.
    Type: Grant
    Filed: May 11, 2015
    Date of Patent: October 17, 2017
    Assignee: Intelligent BioSystems, Inc.
    Inventors: Steven Gordon, Thomas Hagerott, Edmund Golaski, Jerzy Olejnik
  • METHODS AND SOLUTIONS FOR INHIBITING UNDESIRED CLEAVING OF LABELS
    Publication number: 20170275671
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Application
    Filed: March 22, 2017
    Publication date: September 28, 2017
    Inventors: Jerzy Olejnik, Evan Guggenheim, Visalakshi Meyyappan
  • Methods and compositions for inhibiting undesired cleaving of labels
    Patent number: 9765384
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Grant
    Filed: August 28, 2013
    Date of Patent: September 19, 2017
    Assignee: Intelligent BioSystems, Inc.
    Inventors: Jerzy Olejnik, Evan Guggenheim, Visalakshi Visalakshi
  • Polyphenolic Additives in Sequencing by Synthesis
    Publication number: 20170233796
    Abstract: The invention relates to methods, compositions, devices, systems and kits as described including, without limitation, reagents and mixtures for determining the identity of nucleic acids in nucleotide sequences using, for example, sequencing by synthesis methods. In particular, the present invention contemplates the use of polyphenolic compounds, known as antioxidant additives, to improve the efficiency of Sequencing-By-Synthesis reactions. For example, gallic acid (GA) is shown herein to be one of many exemplary SBS polyphenolic additives.
    Type: Application
    Filed: February 8, 2017
    Publication date: August 17, 2017
    Inventors: Jerzy Olejnik, Michel Georges Perbost
  • METHODS AND COMPOSITIONS FOR INCORPORATING NUCLEOTIDES
    Publication number: 20170211141
    Abstract: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
    Type: Application
    Filed: April 5, 2017
    Publication date: July 27, 2017
    Inventors: Steven Gordon, Jerzy Olejnik