Patents by Inventor John D. Shaughnessy

John D. Shaughnessy has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230293649
    Abstract: The present invention provides methods of treating bone loss or cancer using CST6. In these methods, CST6 may be provided as a recombinant CST6 protein, a polynucleotide construct comprising CST6, or an immune cell expressing CST6 protein.
    Type: Application
    Filed: August 2, 2021
    Publication date: September 21, 2023
    Inventors: Fenghuang ZHAN, John D. SHAUGHNESSY, Jr., Jin-Ran CHEN
  • Publication number: 20200291486
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Application
    Filed: March 20, 2020
    Publication date: September 17, 2020
    Applicant: BIOVENTURES, LLC
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Publication number: 20200270691
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogenesis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myeloma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Application
    Filed: February 28, 2020
    Publication date: August 27, 2020
    Applicant: BioVentures, LLC
    Inventors: John D. Shaughnessy, JR., Bart Barlogie, Fenghuang Zhan
  • Patent number: 10597729
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Grant
    Filed: May 12, 2017
    Date of Patent: March 24, 2020
    Assignee: BIOVENTURES, LLC
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Patent number: 10577656
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myleoma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Grant
    Filed: February 17, 2017
    Date of Patent: March 3, 2020
    Assignee: BIOVENTURES, LLC
    Inventors: John D. Shaughnessy, Jr., Bart Barlogie, Fenghuang Zhan
  • Publication number: 20180080079
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myleoma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Application
    Filed: February 17, 2017
    Publication date: March 22, 2018
    Applicant: BioVentures, LLC
    Inventors: John D. Shaughnessy, JR., Bart BARLOGIE, Fenghuang Zhan
  • Publication number: 20170342501
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Application
    Filed: May 12, 2017
    Publication date: November 30, 2017
    Applicant: BIOVENTURES, LLC
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Patent number: 9714451
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myleoma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Grant
    Filed: September 27, 2013
    Date of Patent: July 25, 2017
    Assignee: BOARD OF TRUSTEES OF THE UNIVERSITY OF ARKANSAS
    Inventors: John D. Shaughnessy, Jr., Bart Barlogie, Fenghuang Zhan
  • Patent number: 9650677
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Grant
    Filed: May 21, 2013
    Date of Patent: May 16, 2017
    Assignee: BIOVENTURES, LLC
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Patent number: 9574238
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myeloma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Grant
    Filed: May 22, 2013
    Date of Patent: February 21, 2017
    Assignee: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, Jr., Bart Barlogie, Fenghuang Zhan
  • Patent number: 9309564
    Abstract: The invention relates to compositions, kits, and methods for detecting, characterizing, preventing, and treating human cancer. A variety of chromosomal regions (MCRs) and markers corresponding thereto, are provided, wherein alterations in the copy number of one or more of the MCRs and/or alterations in the amount, structure, and/or activity of one or more of the markers is correlated with the presence of cancer.
    Type: Grant
    Filed: May 17, 2012
    Date of Patent: April 12, 2016
    Assignees: Dana-Farber Cancer Institute, Inc., Board of Trustees of the University of Arkansas
    Inventors: Ronald A. DePinho, Kenneth C. Anderson, Ruben D. Carrasco, Giovanni Tonon, Cameron Brennan, John D. Shaughnessy, Jr., Lynda Chin
  • Publication number: 20150140016
    Abstract: The present invention is drawn to understanding lytic bone diseases. In this regard, the present invention discloses mechanism by which Wnt signaling antagonist inhibits bone differentiation. Also disclosed herein are methods for treating multiple myeloma, for restoring osteoprotegerin (OPG) expression in a cell, for inhibiting receptor activator of nuclear factor kappa B ligand (RANKL) expression in a cell, and for increasing bone mass in a subject. These methods utilize a DKK1 neutralizing antibody, an anti-sense oligonucleotide against a DKK1 gene, or a shRNA against a DKK1 gene to inhibit the activity of the DKK1 protein.
    Type: Application
    Filed: January 30, 2015
    Publication date: May 21, 2015
    Applicant: BOARD OF TRUSTEES OF THE UNIVERSITY OF ARKANSAS
    Inventors: John D. Shaughnessy, JR., Bart Barlogie, Ya-Wei Qiang
  • Patent number: 8992909
    Abstract: The present invention is drawn to understanding lytic bone diseases. In this regard, the present invention discloses mechanism by which Wnt signaling antagonist inhibits bone differentiation. Also disclosed herein are methods to control bone loss, treat bone disease and prevent tumor growth in bones of individual.
    Type: Grant
    Filed: February 22, 2012
    Date of Patent: March 31, 2015
    Assignee: Board of Trustees of the University of Arkansas
    Inventors: John D Shaughnessy, Jr., Bart Barlogie, Ya-Wei Qiang
  • Patent number: 8954283
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogenesis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myleoma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Grant
    Filed: October 6, 2009
    Date of Patent: February 10, 2015
    Inventors: John D. Shaughnessy, Jr., Bart Barlogie, Fenghuang Zhan
  • Patent number: 8843320
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Grant
    Filed: May 20, 2005
    Date of Patent: September 23, 2014
    Assignee: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Publication number: 20140179545
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myleoma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Application
    Filed: September 27, 2013
    Publication date: June 26, 2014
    Applicant: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, JR., Bart Barlogie, Fenghuang Zhan
  • Publication number: 20140079813
    Abstract: Provided are methods, systems and kits for predicting post-relapse survival of a cancer patient and for identifying cancer genes predictive of the post-relapse survival of the patient. Values representing gene expression levels of a group of genes associated with survival of the cancer cells are determined using gene expression profiling platforms and a plurality of probe sets that hybridize to one or more of the genes in the group. A predictive model establishes a predictive value based on the weighted contribution of each gene associated with survival of the cancer cells to risk of death for the cancer patient and imports expression values of the genes in the group that is indicative of a risk of death for the relapsed patient.
    Type: Application
    Filed: April 27, 2012
    Publication date: March 20, 2014
    Inventors: Joshua Epstein, Shmuel Yaccoby, John D. Shaughnessy, JR., Barthel Barlogie, Igor Entin
  • Publication number: 20130345080
    Abstract: Gene expression profiling is a powerful tool that has varied utility. It enables classification of multiple myeloma into subtypes and identifying genes directly involved in disease pathogensis and clinical manifestation. The present invention used gene expression profiling in large uniformly treated population of patients with myeloma to identify genes associated with poor prognosis. It also demonstrated that over-expression of CKS1B gene, mainly due to gene amplification that was determined by Fluorescent in-situ hybridization to impart a poor prognosis in multiple myeloma. It is further contemplated that therapeutic strategies that directly target CKS1B or related pathways may represent novel, and more specific means of treating high risk myeloma and may prevent its secondary evolution.
    Type: Application
    Filed: May 22, 2013
    Publication date: December 26, 2013
    Applicant: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, JR., Bart Barlogie, Fenghuang Zhan
  • Publication number: 20130338025
    Abstract: Gene expression profiling in multiple myeloma patients identifies genes that distinguish between patients with subsequent early death or long survival after treatment. Poor survival is linked to over-expression of genes such as ASPM, OPN3 and CKS1B which are located in chromosome 1q. Given the frequent amplification of 1q in many cancers, it is possible that these genes can be used as powerful prognostic markers and therapeutic targets for multiple myeloma and other cancer.
    Type: Application
    Filed: May 21, 2013
    Publication date: December 19, 2013
    Applicant: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, Fenghuang Zhan, Bart Barlogie
  • Publication number: 20130209446
    Abstract: Provided herein are methods of diagnosing and/or treating malignant or pre-malignant conditions in a subject. Overexpression of copy number variant-dependent genes, e.g., genes encoding a cell surface receptor, resulting from copy number changes compared to control is diagnostic of the condition, such as multiple myeloma or monoclonal gammopathy of undetermined significance. Also provided are methods for treating malignant conditions, such as multiple myeloma or a hyperdiploid subtype, with therapeutic agents, with or without other anti-cancer drugs, to downrregulate the overexpressed CNV genes and/or up-regulate the underexpressed genes. Furthermore, methods for lowering drug resistance in multiple myeloma cells via inhibition of platelet activation or thrombin release and for increasing survivability of a multiple myeloma subject via lithibition of PSMD4 gene to increase b-catenin protein expression are provided.
    Type: Application
    Filed: July 20, 2011
    Publication date: August 15, 2013
    Applicant: Board of Trustees of the University of Arkansas
    Inventors: John D. Shaughnessy, JR., Bart Barlogie, Erming Tian, Yiming Zhou