Patents by Inventor John E. Monahan

John E. Monahan has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7361511
    Abstract: The invention relates to nucleic acid molecules and proteins associated with cervical cancer including pre-malignant conditions such as dysplasia. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human cervical cancers are also provided.
    Type: Grant
    Filed: August 20, 2003
    Date of Patent: April 22, 2008
    Assignee: Millenium Pharmaceuticals, Inc.
    Inventors: John E. Monahan, Xumei Zhao, Yan Chen
  • Patent number: 7125663
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with cervical cancer including pre-malignant conditions such as dysplasia. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human cervical cancers are provided.
    Type: Grant
    Filed: June 12, 2002
    Date of Patent: October 24, 2006
    Assignee: Millenium Pharmaceuticals, Inc.
    Inventors: Robert Schlegel, Yan Chen, Xumei Zhao, John E. Monahan, Shubhangi Kamatkar, Manjula Gannavarapu, Karen Glatt, Sebastian Hoersh
  • Publication number: 20040259086
    Abstract: The invention relates to compositions, kits, and methods for detecting, characterizing, preventing, and treating human prostate cancers. A variety of novel markers are provided, wherein changes in the levels of expression of one or more of the markers is correlated with the presence of prostate cancer.
    Type: Application
    Filed: February 4, 2003
    Publication date: December 23, 2004
    Applicant: Millennium Pharmaceuticals, Inc.
    Inventors: Robert Schlegel, Wilson O. Endege, John E. Monahan
  • Patent number: 6677140
    Abstract: The present invention entails methods and kits for carrying them out based on the discovery that an RNA replicase, such as Q&bgr; replicase, has DNA-dependent RNA polymerase (“DDRP”) activity with nucleic acid segments, including DNA segments and DNA:RNA chimeric segments, which comprise a 2′-deoxyribonucleotide or an analog thereof and which have sequences of RNAs that are autocatalytically replicatable by the replicase.
    Type: Grant
    Filed: February 7, 2002
    Date of Patent: January 13, 2004
    Assignee: Promega Corporation
    Inventors: Randall L. Dimond, Steven J. Ekenberg, James R. Hartnett, Geoffrey R. Hudson, Leopoldo G. Mendoza, Katharine M. Miller, John E. Monahan, Christopher L. Jones, Mark A. Maffitt, Richard A. Martinelli, Edward E. Pahuski, James W. Schumm
  • Publication number: 20030148410
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with colon cancer. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human colon cancers are provided.
    Type: Application
    Filed: November 21, 2002
    Publication date: August 7, 2003
    Applicant: Millennium Pharmaceuticals, Inc.
    Inventors: Allison Berger, Tracy L. Guillemette, Robert Schlegel, John E. Monahan, Shubhangi Kamatkar, Stephen N. Thibodeau, Lawrence J. Burgart
  • Publication number: 20030143607
    Abstract: Highly hydrophilic non-nucleosidic tags with multiple labels are provided for use in nucleic acid probes. The tags are branched structures having a phosphodiester backbone, which have the advantages of a small dimensional size and high hydrophilicity. After the tag is labeled, its high negative charge and minimal size help to keep the carriers away from DNA or RNA molecules, due to repulsion between negative charges. Non-specific intercalation and steric hindrance are therefore minimized, and the hydrophobicity, if any of reporter molecules is reduced. The probes are used in place of conventionally labeled oligonucleotides for a variety of hybridization reactions.
    Type: Application
    Filed: December 18, 2002
    Publication date: July 31, 2003
    Inventors: Guohan Yang, Donna M. Ford, Say-Jong Law, John E. Monahan, Todd B. Sells
  • Publication number: 20030124128
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with breast cancer. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human breast cancers are provided.
    Type: Application
    Filed: June 21, 2002
    Publication date: July 3, 2003
    Applicant: Millennium Pharmaceuticals, Inc.
    Inventors: James Lillie, Manjula Gannavarapu, Karen Glatt, Sebastian Hoersch, Shubhangi Kamatkar, Maureen Mertens, John E. Monahan, Vickesh Myer, Youzhen Wang, Yongyao Xu, Xumei Zhao, Rachel E. Meyers, Robert C. Bast, Gabriel N. Hortobagyi, Lajos Pusztai, Funda Meric, Aysegul Sahin, Gordon B. Mills
  • Publication number: 20030108963
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with prostate cancer including pre-malignant conditions. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human prostate cancers are provided.
    Type: Application
    Filed: July 25, 2002
    Publication date: June 12, 2003
    Applicants: MILLENNIUM PHARMACEUTICALS, INC., Mayo Foundation for Medical Education and Research
    Inventors: Robert Schlegel, John E. Monahan, Wilson O. Endege, Manjula Gannavarapu, Bella O. Gorbatcheva, Sebastian Hoersch, Shubhangi Kamatkar, Angela M. Quinn, Karen Glatt, Xumei Zhao, Dustin L. Anderson
  • Publication number: 20030087270
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with cervical cancer including pre-malignant conditions such as dysplasia. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human cervical cancers are provided.
    Type: Application
    Filed: June 12, 2002
    Publication date: May 8, 2003
    Applicant: Millennium Pharmaceuticals, Inc.
    Inventors: Robert Schlegel, Yan Chen, Xumei Zhao, John E. Monahan, Shubhangi Kamatkar, Manjula Gannavarapu, Karen Glatt, Sebastian Hoersh
  • Publication number: 20030087250
    Abstract: The invention relates to newly discovered nucleic acid molecules and proteins associated with ovarian cancer. Compositions, kits, and methods for detecting, characterizing, preventing, and treating human ovarian cancers are provided.
    Type: Application
    Filed: March 14, 2002
    Publication date: May 8, 2003
    Applicant: Millennium Pharmaceuticals, Inc.
    Inventors: John E. Monahan, Manjula Gannavarapu, Sebastian Hoersch, Shubhangi Kamatkar, Steven G. Kovats, Rachel E. Meyers, Michael P. Morrisey, Peter J. Olandt, Ami Sen, Petter Ole Veiby, Gordon B. Mills, Robert C. Bast, Karen Lu, Rosemarie E. Schmandt, Xumei Zhao, Karen Glatt
  • Patent number: 6504019
    Abstract: Highly hydrophilic non-nucleosidic tags with multiple labels are provided for use in nucleic acid probes. The tags are branched structures having a phosphodiester backbone, which have the advantages of a small dimensional size and high hydrophilicity. After the tag is labeled, its high negative charge and minimal size help to keep the carriers away from DNA or RNA molecules, due to repulsion between negative charges. Non-specific intercalation and steric hindrance are therefore minimized, and the hydrophobicity, if any of reporter molecules is reduced. The probes are used in place of conventionally labeled oligonucleotides for a variety of hybridization reactions.
    Type: Grant
    Filed: March 21, 2001
    Date of Patent: January 7, 2003
    Assignee: Bayer Corporation
    Inventors: Guohan Yang, Donna M. Ford, Say-Jong Law, John E. Monahan, Todd B. Sells
  • Publication number: 20020192677
    Abstract: The present invention entails methods, and kits for carrying them out, based on the discovery that an RNA replicase, such as Q&bgr; replicase, has DNA-dependent RNA polymerase (“DDRP”) activity with nucleic acid segments, including DNA segments and DNA:RNA chimeric segments, which comprise a 2′-deoxyribonucleotide or an analog thereof and which have sequences of RNAs that are autocatalytically replicatable by the replicase. The discovery of this DDRP activity provides methods of the invention for nucleic acid amplification wherein a nucleic acid, with a DNA segment with the sequence of an RNA that is autocatalytically replicatable by an RNA replicase, is provided as a substrate for the replicase. The replicase catalyzes synthesis, from the DNA segment, of the RNA, which the replicase then autocatalytically replicates. The invention entails use of the amplification methods in detecting nucleic acid analytes, as in nucleic acid probe hybridization assays.
    Type: Application
    Filed: February 7, 2002
    Publication date: December 19, 2002
    Applicant: Promega Corporation
    Inventors: Randall L. Dimond, Steven J. Ekenberg, James R. Hartnett, Geoffrey R. Hudson, Leopoldo G. Mendoza, Katharine M. Miller, John E. Monahan, Christopher L. Jones, Mark A. Maffitt, Richard A. Martinelli, Edward E. Pahuski, James W. Schumm
  • Publication number: 20020192699
    Abstract: This invention relates to novel human genes, to proteins expressed by the genes, and to variants of the proteins. The invention also relates to diagnostic and therapeutic agents related to the genes and proteins, including probes, antisense constructs, and antibodies. The invention further relates to polynucleotides differentially expressed in prostate cancer.
    Type: Application
    Filed: July 23, 2002
    Publication date: December 19, 2002
    Applicant: Chiron Corporation
    Inventors: Jimmy Zhang, Jon H. Astle, Eddie Carroll, Wilson O. Endege, Donna M. Ford, John E. Monahan, Robert Schlegel, Kathleen E. Steinmann
  • Patent number: 6476207
    Abstract: This invention relates to novel human genes, to proteins expressed by the genes, and to variants of the proteins. The invention also relates to diagnostic and therapeutic agents related to the genes and proteins, including probes, antisense constructs, and antibodies. The invention further relates to polynucleotides differentially expressed in prostate cancer.
    Type: Grant
    Filed: June 9, 1999
    Date of Patent: November 5, 2002
    Assignee: Chiron Corporation
    Inventors: Jimmy Zhang, Jon H. Astle, Eddie Carroll, III, Wilson O. Endege, Donna M. Ford, John E. Monahan, Robert Schlegel, Kathleen E. Steinmann
  • Publication number: 20020098485
    Abstract: Disclosed is amplification of a target sequence using the activity of a replicase that quasi-autocatalytically replicates a specific replicase replicable or “replicatable” sequence, while ensuring fidelity thereof by detecting the presence of the amplified target or antitarget sequence rather than the amplified replicase replicable sequence. A method according to the invention for assaying a target nucleic acid comprising hybridizing a set of one or more amplification probes with a nucleic acid sample is provided. A set of two chemiluminescent detection probes each for detecting portions of amplified target sequence along with a dual photomultiplier tube detection system for simultaneous detection of the two chemiluminescent detection probes are also provided for practicing the invention, for use with a target specific set of amplification probes. Kits for practicing the invention are also provided.
    Type: Application
    Filed: February 8, 2001
    Publication date: July 25, 2002
    Inventors: Ann M. Morello, Qingping Jiang, John E. Monahan, Say-Jong Law
  • Patent number: 6369207
    Abstract: The present invention entails methods, and kits for carrying them out, based on the discovery that an RNA replicase, such as Q&bgr; replicase, has DNA-dependent RNA polymerase (“DDRP”) activity with nucleic acid segments, including DNA segments and DNA:RNA chimeric segments, which comprise a 2′-deoxyribonucleotide or an analog thereof and which have sequences of RNAs that are autocatalytically replicatable by the replicase. The discovery of this DDRP activity provides methods of the invention for nucleic acid amplification wherein a nucleic acid, with a DNA segment with the sequence of an RNA that is autocatalytically replicatable by an RNA replicase, is provided as a substrate for the replicase. The replicase catalyzes synthesis, from the DNA segment, of the RNA, which the replicase then autocatalytically replicates. The invention entails use of the amplification methods in detecting nucleic acid analytes, as in nucleic acid probe hybridization assays.
    Type: Grant
    Filed: September 14, 1999
    Date of Patent: April 9, 2002
    Assignee: Promega Corporation
    Inventors: Randall L. Dimond, Steven J. Ekenberg, James R. Hartnett, Geoffrey R. Hudson, Leopoldo G. Mendoza, Katharine M. Miller, John E. Monahan, Christopher L. Jones, Mark A. Maffitt, Richard A. Martinelli, Edward E. Pahuski, James W. Schumm
  • Publication number: 20020015953
    Abstract: Highly hydrophilic non-nucleosidic tags with multiple labels are provided for use in nucleic acid probes. The tags are branched structures having a phosphodiester backbone, which have the advantages of a small dimensional size and high hydrophilicity. After the tag is labeled, its high negative charge and minimal size help to keep the carriers away from DNA or RNA molecules, due to repulsion between negative charges. Non-specific intercalation and steric hindrance are therefore minimized, and the hydrophobicity, if any of reporter molecules is reduced. The probes are used in place of conventionally labeled oligonucleotides for a variety of hybridization reactions.
    Type: Application
    Filed: March 21, 2001
    Publication date: February 7, 2002
    Inventors: Guohan Yang, Donna M. Ford, Say-Jong Law, John E. Monahan, Todd B. Sells
  • Patent number: 6262333
    Abstract: This invention relates to novel human genes, to proteins expressed by the genes, and to variants of the proteins. The invention also relates to diagnostic assays and therapeutic agents related to the genes and proteins, including probes, antisense constructs. and antibodies. The subject nucleic acids have been found to be differentially regulated in tumor cells, particularly colon cancer cell lines and/or tissue.
    Type: Grant
    Filed: June 8, 1999
    Date of Patent: July 17, 2001
    Assignee: Bayer Corporation
    Inventors: Wilson O. Endege, Kathleen E. Steinmann, Jon H. Astle, Christopher C. Burgess, Steven E. Bushnell, Eddie Carroll, III, Theodore J. Catino, Adnan Derti, Donna M. Ford, Marcia E. Lewis, John E. Monahan, Robert Schlegel
  • Patent number: 6262334
    Abstract: This invention relates to novel human genes, to proteins expressed by the genes, and to variants of the proteins. The invention also relates to diagnostic assays and therapeutic agents related to the genes and proteins, including probes, antisense constructs, and antibodies. The subject nucleic acids have been found to be differentially regulated in tumor cells, particularly in colon cancer tissue.
    Type: Grant
    Filed: August 30, 1999
    Date of Patent: July 17, 2001
    Assignee: Bayer Corporation
    Inventors: Wilson O. Endege, Kathleen E. Steinmann, Jon H. Astle, Christopher C. Burgess, Eddie Carroll, III, Theodore J. Catino, Poornima Dwivedi, Donna M. Ford, Marcia E. Lewis, Gary A. Molino, John E. Monahan, Robert Schlegel
  • Patent number: 6090589
    Abstract: The present invention entails methods, and kits for carrying them out, based on the discovery that an RNA replicase, such as Q.beta. replicase, has DNA-dependent RNA polymerase ("DDRP") activity with nucleic acid segments, including DNA segments and DNA:RNA chimeric segments, which comprise a 2'-deoxyribonucleotide or an analog thereof and which have sequences of RNAs that are autocatalytically replicatable by the replicase. The discovery of this DDRP activity provides methods of the invention for nucleic acid amplification wherein a nucleic acid, with a DNA segment with the sequence of an RNA that is autocatalytically replicatable by an RNA replicase, is provided as a substrate for the replicase.
    Type: Grant
    Filed: June 6, 1995
    Date of Patent: July 18, 2000
    Assignee: Promega Corporation
    Inventors: Randall L. Dimond, Steven J. Ekenberg, James R. Hartnett, Geoffrey R. Hudson, Leopoldo G. Mendoza, Katharine M. Miller, John E. Monahan, Christopher L. Jones, Mark A. Maffitt, Richard A. Martinelli, Edward E. Pahuski, James W. Schumm