Abstract: A method of providing a clinical decision support in allergy diagnosis comprises the steps of: a) providing a body fluid sample from a patient, b) selecting a plurality of allergens to be tested for in the sample, c) determining for each allergen the concentration in the sample of at least one immunoglobulin directed against the allergen, d) transforming each determined immunoglobulin concentration to a clinical effect value on a normalized scale common to allergens in general, e) assigning to each allergen tested for, based on known cross-reactivity information for the allergen, an allergen specificity value, representing the degree of cross-reactivity for the allergen, and f) presenting determined clinical effect and allergen specificity values for each allergen, or a group or groups of the allergens. A computer-implemented method, a computer program product, and a patient information carrier device containing a diagnosis result are also disclosed.

Abstract: A method of determining kinetic parameters for a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in solution, comprises sequentially, without intermediate regeneration or renewal of the immobilized ligand, flowing a plurality of fluid volumes containing different known concentrations of the binding partner over the solid support surface, monitoring the momentary amount of binding partner bound to the solid support surface related to time and solution concentration of binding partner and collecting the binding data, and determining the kinetic parameters by globally fitting a predetermined kinetic model for the interaction between the binding partner and the immobilized ligand to the collected binding data, which model allows for mass transport limitation at the solid support surface.

Abstract: A method of analysis wherein molecular interactions at one or more sensing surface areas are detected and respective response curves representing the progress of each interaction with time are produced, and wherein a resulting set of response curves is subjected to a quality assessment procedure which comprises representing the response curves with one or more quality descriptors, applying a quality classification method to the descriptors to find outliers, and removing the outliers. The invention also relates to an analytical system including means for classifying the response curves with regard to quality, a computer program for performing the classification, and a computer program product containing the program.

Abstract: A method of analysis wherein molecular interactions at one or more sensing surface areas are detected and respective response curves representing the progress of each interaction with time are produced, and wherein a resulting set of response curves is subjected to a quality assessment procedure which comprises representing the response curves with one or more quality descriptors, applying a quality classification method to the descriptors to find outliers, and removing the outliers. The invention also relates to an analytical system including means for classifying the response curves with regard to quality, a computer program for performing the classification, and a computer program product containing the program.

Abstract: A method of analysis or diagnosis of solid objects is based on real-time detection of how predefined probes interact with structures present on or in the solid object combined with the calculation of how the recorded binding curves of said probes are distributed in terms of interaction properties. The interaction properties are input to a classification algorithm which automatically determines statues of the solid object. The method is particularly advantageous for solid biological objects like tissue slices combined with antibody probes, said antibody recognizing receptors known to be over-expressed in disease states on said tissue slice.

Abstract: A method of characterizing a population of antibodies to an antigen comprises contacting a sensor surface having the antigen immobilized thereto with a sample containing the antibody population to bind antibodies to the surface, and detecting dissociation of antibodies from the sensor surface during a dissociation phase when sample no longer contacts the surface. Based on the dissociation behaviour, the antibody population is characterized in terms of subpopulations of more and less stable antibodies, respectively. The method may be used to determine the immunogenicity of drug by monitoring the appearance of anti-drug antibodies in a patient over time, and determining any shift in proportions between more stable and less stable antibodies.

Abstract: A method of determining kinetic parameters for a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in solution, comprises sequentially, without intermediate regeneration or renewal of the immobilized ligand, flowing a plurality of fluid volumes containing different known concentrations of the binding partner over the solid support surface, monitoring the momentary amount of binding partner bound to the solid support surface related to time and solution concentration of binding partner and collecting the binding data, and determining the kinetic parameters by globally fitting a predetermined kinetic model for the interaction between the binding partner and the immobilized ligand to the collected binding data, which model allows for mass transport limitation at the solid support surface.

Abstract: A device detects interactions between species in liquid and species on a solid support. It includes a solid support (11), a mechanism (16) for temporarily reducing the amount of a liquid to which the support is exposed, a detector (12) capable of detecting an interaction between species attached to the solid support, and species contained in the liquid. Also described is a method including attaching a first species on a solid support, exposing the first species to a liquid containing a second species, performing a measurement, capable of detecting an interaction between the first and the second species, and a reference measurement. The liquid is temporarily removed during the measurement.

Abstract: The invention relates to a method of characterizing interaction between two species in a liquid environment, wherein a liquid comprising said at least one species is passed as a flow through a measurement system, and wherein the interaction takes place within said measurement system. The method comprises generating a concentration gradient of at least a first one of said species or of at least one other species having an influence on the interaction or on interacted components. The flow of liquid is passed through a sensor device, and a result of interaction between said at least two species is detected. The flow of liquid is intersected at least once with a further liquid before the flow is passed through said sensor, so as to create at least two separated liquid segments having different concentrations of at least one of said species forming the concentration gradient.

Abstract: A method of determining kinetic parameters for a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in solution, comprises sequentially, without intermediate regeneration or renewal of the immobilized ligand, flowing a plurality of fluid volumes containing different known concentrations of the binding partner over the solid support surface, monitoring the momentary amount of binding partner bound to the solid support surface related to time and solution concentration of binding partner and collecting the binding data, and determining the kinetic parameters by globally fitting a predetermined kinetic model for the interaction between the binding partner and the immobilized ligand to the collected binding data, which model allows for mass transport limitation at the solid support surface.

Abstract: A method and an apparatus for the development of a control process for an instrument are disclosed. The method comprises a first step of selecting one or more commands from a plurality of pre-defined commands in which at least one of the selected one or more commands being a purpose-linked command; and a second step of combining the selected one or more commands to produce the control process. The pre-defined commands have a control part for controlling the operation of the instrument and at least one of the pre-defined commands has a purpose part for controlling the purpose of the command.

Abstract: A method of determining kinetic parameters for a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in solution, comprises sequentially, without intermediate regeneration or renewal of the immobilized ligand, flowing a plurality of fluid volumes containing different known concentrations of the binding partner over the solid support surface, monitoring the momentary amount of binding partner bound to the solid support surface related to time and solution concentration of binding partner and collecting the binding data, and determining the kinetic parameters by globally fitting a predetermined kinetic model for the interaction between the binding partner and the immobilized ligand to the collected binding data, which model allows for mass transport limitation at the solid support surface.

Abstract: A device detects interactions between species in liquid and species on a solid support. It includes a solid support (11), a mechanism (16) for temporarily reducing the amount of a liquid to which the support is exposed, a detector (12) capable of detecting an interaction between species attached to the solid support, and species contained in the liquid. Also described is a method including attaching a first species on a solid support, exposing the first species to a liquid containing a second species, performing a measurement, capable of detecting an interaction between the first and the second species, and a reference measurement. The liquid is temporarily removed during the measurement.

Abstract: A method of determining affinity for a molecular binding interaction from measured steady state binding data comprises the steps of: a) providing a plurality of experimental binding data sets for the binding interaction between two chemical species, wherein each data set includes binding data measured at multiple time points during an association phase and a dissociation phase of the interaction, b) selecting from the plurality of experimental binding data sets a plurality of binding data measured at a defined time point at or near the end of the association phase as representing steady state binding data, c) subjecting each data set to a quality control which comprises estimating the reliability of the steady state binding data by evaluating other binding data of the same data set, d) excluding each data set which is estimated in step c) to contain unreliable steady state binding data, and e) determining the affinity from the steady state binding data of remaining data sets.

Abstract: A method for accelerating hardware simulation is presented wherein cycle based simulations of digital system designs are generated by raising the level of abstraction in a hardware simulation environment. Behavioral models of the digital system components are created in a high level general purpose programming language. Function calls created in a high level general purpose programming language provide a transaction based communication interface. During a simulation of the system design, the behavioral models communicate with each other through the transaction based communication interface. Additionally, the behavioral models employ an execute and update method of instruction processing that generates cycle accurate information for the simulation.

Abstract: A method for determining interaction of an analyte with a binding agent immobilized to a solid support surface by contacting the surface with a fluid sample containing the analyte, and detecting binding events at the solid support surface, wherein the sample is based on a complex medium containing at least one species other than analyte that may interact with the solid support surface, is disclosed. The method comprises contacting the solid support surface with sample medium free from analyte prior to contacting the surface with the analyte-containing sample.

Abstract: A method and an apparatus for the development of a control process for an instrument are disclosed. The method comprises a first step of selecting one or more commands from a plurality of pre-defined commands in which at least one of the selected one or more commands being a purpose-linked command; and a second step of combining the selected one or more commands to produce the control process. The pre-defined commands have a control part for controlling the operation of the instrument and at least one of the pre-defined commands has a purpose part for controlling the purpose of the command.

Abstract: The invention relates to a computer-implemented method for determining at least one kinetic parameter for the interaction of an analyte in solution with an immobilized ligand from a data set comprising a plurality of different binding curves, each of which represents the progress of the interaction of the analyte with the ligand with time, comprising the steps of: a) performing at least one fit of the whole data set or subsets thereof to a predetermined kinetic model for the interaction; b) based on the result of the fit or fits performed in step a), identifying and excluding binding curves of unacceptable quality; c) performing a final fit to the remaining data set; and d) obtaining therefrom the kinetic parameter or parameters. The invention also relates to an analytical system for carrying out the method, as well as a computer program, computer program product and computer system for performing the method.

Abstract: The invention relates to a method of characterizing interaction between two species in a liquid environment, wherein a liquid comprising said at least one species is passed as a flow through a measurement system, and wherein the interaction takes place within said measurement system. The method comprises generating a concentration gradient of at least a first one of said species or of at least one other species having an influence on the interaction or on interacted components. The flow of liquid is passed through a sensor device, and a result of interaction between said at least two species is detected. The flow of liquid is intersected at least once with a further liquid before the flow is passed through said sensor, so as to create at least two separated liquid segments having different concentrations of at least one of said species forming the concentration gradient.