Patents by Inventor Mark Donnelly

Mark Donnelly has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 6864075
    Abstract: Described herein are novel nucleic acids, proteins and methods that can be used to provide new catalysts with desirable traits for industrial processes. In particular, novel reductases isolated from the environment using PCR methods are described.
    Type: Grant
    Filed: April 17, 2003
    Date of Patent: March 8, 2005
    Assignee: Genencor International, Inc.
    Inventors: Mark Donnelly, William H. Eschenfeldt, Jonathan Trent
  • Publication number: 20050050163
    Abstract: The present invention discloses a system and method of searching, exploring or otherwise navigating the contents of a collection of networked documents or pages. In a preferred embodiment, this system provides a user with a multimedia display format which intuitively indicates, without the user opening a document or web page, the characteristics of the document or web pages. Additionally, this system permits a user to move between such documents without extensively entering explicit search terms. With this system, the contents of Internet web pages may be evaluated by incrementally adjusting through a multimedia display of a continuum of related web pages, which are identified as having keywords that match any of a collection of keywords generated from an initially-inputted keyword. This system further comprises a dial or rotary control that allows the user to select, in a continuous fashion, among such displayed, Internet web pages.
    Type: Application
    Filed: September 28, 2004
    Publication date: March 3, 2005
    Inventors: James Cole, Medea Minnich, William Humm, Mark Donnelly, Susan Donnelly
  • Publication number: 20040077038
    Abstract: The present invention provides methods for the production of proteins, particularly toxic proteins, in host cells. The invention provides methods which use a fusion protein comprising a chaperonin binding domain in host cells induced or regulated to have increased levels of chaperonin which binds the chaperonin binding domain.
    Type: Application
    Filed: November 13, 2003
    Publication date: April 22, 2004
    Inventors: Mark Donnelly, Andrzej Joachimiak
  • Patent number: 6677139
    Abstract: The present invention provides methods for the production of proteins, particularly toxic proteins, in host cells. The invention provides methods which use a fusion protein comprising a chaperonin binding domain in host cells induced or regulated to have increased levels of chaperonin which binds the chaperonin binding domain.
    Type: Grant
    Filed: December 23, 1999
    Date of Patent: January 13, 2004
    Assignee: Genecor International, Inc.
    Inventors: Mark Donnelly, Andrzej Joachimiak
  • Publication number: 20030203449
    Abstract: Described herein are novel nucleic acids, proteins and methods that can be used to provide new catalysts with desirable traits for industrial processes. In particular, novel reductases isolated from the environment using PCR methods are described.
    Type: Application
    Filed: April 17, 2003
    Publication date: October 30, 2003
    Inventors: Mark Donnelly, William H. Eschenfeldt, Jonathan Trent
  • Publication number: 20030119145
    Abstract: The present invention provides soluble cytochrome p450 reductase (CPR) proteins from Candida sp. having an altered N-terminal region which results in reduced hydrophobicity of the N-terminal region. Also provided are host cells comprising the subject soluble CPR proteins. In addition, the present invention provides nucleotide and corresponding amino acid sequences for soluble CPR proteins and vectors comprising the nucleotide sequences. Methods for producing a soluble CPR, for increasing production of a dicarboxylic acid, and for detecting a cytochrome P450 are also provided.
    Type: Application
    Filed: October 15, 2002
    Publication date: June 26, 2003
    Inventor: Mark Donnelly
  • Patent number: 6576452
    Abstract: Described herein are novel nucleic acids, proteins and methods that can be used to provide new catalysts with desirable traits for industrial processes. In particular, novel reductases isolated from the environment using PCR methods are described.
    Type: Grant
    Filed: October 4, 2000
    Date of Patent: June 10, 2003
    Assignee: Genencor International, Inc.
    Inventors: Mark Donnelly, William H. Eschenfeldt, Jonathan Trent
  • Patent number: 5869301
    Abstract: The present invention is an economical fermentation method for the production of carboxylic acids comprising the steps of a) inoculating a medium having a carbon source with a carboxylic acid-producing organism; b) incubating the carboxylic acid-producing organism in an aerobic atmosphere to promote rapid growth of the organism thereby increasing the biomass of the organism; c) controllably releasing oxygen to maintain the aerobic atmosphere; d) controllably feeding the organism having increased biomass with a solution containing the carbon source to maintain the concentration of the carbon source within the medium of about 0.5 g/L up to about 1 g/L; e) depriving the aerobic atmosphere of oxygen to produce an anaerobic atmosphere to cause the organism to undergo anaerobic metabolism; f) controllably feeding the organism having increased biomass a solution containing the carbon source to maintain the concentration of the carbon source within the medium of .gtoreq.
    Type: Grant
    Filed: January 31, 1997
    Date of Patent: February 9, 1999
    Assignee: Lockhead Martin Energy Research Corporation
    Inventors: Nhuan Phu Nghiem, Mark Donnelly, Cynthia S. Millard, Lucy Stols
  • Patent number: 5770435
    Abstract: A method for isolating succinic acid producing bacteria is provided comprising increasing the biomass of an organism which lacks the ability to catabolize pyruvate, and then subjecting the biomass to glucose-rich medium in an anaerobic environment to enable pyruvate-catabolizing mutants to grow.The invention also provides for a mutant that produces high amounts of succinic acid, which as been derived from a parent which lacked the genes for pyruvate formate lyase and lactate dehydrogenase, and which belongs to the E.coli Group of Bacteria.
    Type: Grant
    Filed: November 2, 1995
    Date of Patent: June 23, 1998
    Assignee: University of Chicago
    Inventors: Mark Donnelly, Cynthia S. Millard, Lucy Stols
  • Patent number: RE37393
    Abstract: A method for isolating succinic acid producing bacteria is provided comprising increasing the biomass of an organism which lacks the ability to catabolize pyruvate, and then subjecting the biomass to glucose-rich medium in an anaerobic environment to enable pyruvate-catabolizing mutants to grow. The invention also provides for a mutant that produces high amounts of succinic acid, which has been derived from a parent which lacked the genes for pyruvate formate lyase and lactate dehydrogenase, and which belongs to the E.coli Group of Bacteria.
    Type: Grant
    Filed: October 27, 1999
    Date of Patent: September 25, 2001
    Assignee: The University of Chicago
    Inventors: Mark Donnelly, Cynthia S. Millard, Lucy Stols