Patents by Inventor Martin A. Putnam

Martin A. Putnam has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7508608
    Abstract: A method for fabricating an optical identification element is provided, wherein a removable plate or substrate having photosensitive material fabricated thereon, one or more gratings are written on the photosensitive material, then lines are etched to create one or more separate optical identification elements. The one or more gratings may be written by exposing the photosensitive material to ultraviolet (UV) light. The lines may be etched to create the one or more separate optical identification elements by photolithography to define/create the same.
    Type: Grant
    Filed: November 17, 2005
    Date of Patent: March 24, 2009
    Assignee: Illumina, Inc.
    Inventors: Alan D. Kersey, John A. Moon, Martin A. Putnam
  • Publication number: 20090073520
    Abstract: A method for fabricating microparticles is provided. The method includes providing a removable substrate that has a photosensitive material. The substrate has a plurality of inner regions. Each inner region surrounds a corresponding outer region. The method also includes providing at least one optically detectable code within at least one of the inner regions of the substrate and etching lines into the substrate to create a plurality of microparticles having at least one optically detectable code therein. The microparticles have elongated bodies that extend in an axial direction. The optically detectable codes extend in the axial direction within the microparticles.
    Type: Application
    Filed: September 23, 2008
    Publication date: March 19, 2009
    Applicant: Illumina, Inc.
    Inventors: ALAN D. KERSEY, JOHN A. MOON, MARTIN A. PUTNAM
  • Publication number: 20090034078
    Abstract: An optical identification element including a non-waveguide optical substrate. The optical substrate has a volume and includes an inner region surrounded by an outer region. The inner region has an index of refraction that prevents the optical substrate from forming an optical waveguide. The optical substrate includes a diffraction grating within the volume, and the grating provides an output signal indicative of a code when illuminated by an incident light.
    Type: Application
    Filed: June 23, 2008
    Publication date: February 5, 2009
    Applicant: ILLUMINA, INC.
    Inventors: Martin A. Putnam, John A. Moon
  • Publication number: 20080317420
    Abstract: A large diameter optical waveguide, grating, and laser includes a waveguide having at least one core surrounded by a cladding, the core propagating light in substantially a few transverse spatial modes; and having an outer waveguide dimension of said waveguide being greater than about 0.3 mm. At least one Bragg grating may be impressed in the waveguide. The waveguide may be axially compressed which causes the length of the waveguide to decrease without buckling. The waveguide may be used for any application where a waveguide needs to be compression tuned. Also, the waveguide exhibits lower mode coupling from the core to the cladding and allows for higher optical power to be used when writing gratings without damaging the waveguide. The waveguide may resemble a short “block” or a longer “cane” type, depending on the application and dimensions used.
    Type: Application
    Filed: August 27, 2008
    Publication date: December 25, 2008
    Inventors: MARTIN A. PUTNAM, Robert N. Brucato, Paul E. Sanders, Timothy J. Bailey, James M. Sullivan, Alan D. Kersey
  • Patent number: 7441703
    Abstract: An optical reader system 7 for diffraction grating-based encoded microbeads (or bead reader system), comprises a reader box 100, which accepts a bead cell (or cuvette) 102 that holds the microbeads 8, having an embedded code therein. The reader box 100 interfaces along lines 103 with a known computer system 104. The reader box 100 interfaces with a stage position controller 112 and the controller 112 interfaces along a line 115 with the computer system 104 and a manual control device (or joy stick) 116 along a line 117. The reader interrogates the microbeads to determine the embedded code and/or the fluorescence level on the beads. The reader provides information similar to a bead flow cytometer but in a planar format, i.e., a virtual cytometer.
    Type: Grant
    Filed: October 1, 2004
    Date of Patent: October 28, 2008
    Assignee: Illumina, Inc.
    Inventors: John A. Moon, David R. Fournier, Martin A. Putnam, Alan D. Kersey, Tuo Li
  • Patent number: 7437043
    Abstract: A large diameter optical waveguide, grating, and laser includes a waveguide 10 having at least one core 12 surrounded by a cladding 14, the core propagating light in substantially a few transverse spatial modes; and having an outer waveguide dimension d2 of said waveguide being greater than about 0.3 mm. At least one Bragg grating 16 may be impressed in the waveguide 10. The waveguide 10 may be axially compressed which causes the length L of the waveguide 10 to decrease without buckling. The waveguide 10 may be used for any application where a waveguide needs to be compression tuned, e.g., compression-tuned fiber gratings and lasers or other applications. Also, the waveguide 10 exhibits lower mode coupling from the core 12 to the cladding 14 and allows for higher optical power to be used when writing gratings 16 without damaging the waveguide 10. The shape of the waveguide 10 may have other geometries (e.g.
    Type: Grant
    Filed: January 3, 2006
    Date of Patent: October 14, 2008
    Assignee: Weatherford/Lamb, Inc.
    Inventors: Martin A. Putnam, Robert N. Brucato, Paul E. Sanders, Timothy J. Bailey, James M. Sullivan, Alan D. Kersey
  • Patent number: 7433123
    Abstract: An optical identification element (also known herein as a microbead) that is made from pieces of an optical fiber or substrate that includes an inner core or region being surrounded by an outer cladding region. The optical fiber or substrate has an identification code imparted therein containing coded information. The identification code may be in the form of a Bragg grating inscribed or written in either the inner core or outer cladding. The optical identification element may be microscopic in size having a length in a range of 1-1,000 microns or smaller; or for larger applications may have a length of 1.0-1,000 millimeters or more. The outer diameter may be as small as less than 1,000 microns, as well as in a range of 1.0 to 1,000 millimeters for larger applications.
    Type: Grant
    Filed: February 22, 2005
    Date of Patent: October 7, 2008
    Assignee: Illumina, Inc.
    Inventors: Martin A. Putnam, John A. Moon
  • Patent number: 7399643
    Abstract: A method and apparatus are provided for aligning optical elements or microbeads, wherein each microbead has an elongated body with a code embedded therein along a longitudinal axis thereof to be read by a code reading device. The microbeads are aligned with a positioning device so the longitudinal axis of the microbeads is positioned in a fixed orientation relative to the code reading device. The microbeads are typically cylindrically shaped glass beads between 25 and 250 microns (?m) in diameter and between 100 and 500 ?m long, and have a holographic code embedded in the central region of the bead, which is used to identify it from the rest of the beads in a batch of beads with many different chemical probes. A cross reference is used to determine which probe is attached to which bead, thus allowing the researcher to correlate the chemical content on each bead with the measured fluorescence signal.
    Type: Grant
    Filed: September 12, 2003
    Date of Patent: July 15, 2008
    Assignee: Cyvera Corporation
    Inventors: John Moon, Martin A. Putnam, Tuo Li, Joseph Traynor
  • Publication number: 20080165656
    Abstract: A system for writing an optical code within or on a fiber substrate is provided. The system includes a holding device that has a plurality of supports spaced apart from each other. The fiber substrate is wound about the supports such that the fiber substrate forms at least one flat section extending between adjacent supports. The system also includes at least one light source that is configured to write an optical code within or on the flat section of the fiber substrate.
    Type: Application
    Filed: March 21, 2008
    Publication date: July 10, 2008
    Inventors: John A. Moon, Martin A. Putnam, Paul S. Szczepanek, Tuo Li, Anthony Rauseo, Joseph Traynor
  • Patent number: 7386204
    Abstract: An optical filter, including a pair of Bragg grating units optically coupled to respective ports of a circulator, is provided for filtering a selected wavelength band of light from a DWDM input light. Each grating unit includes a respective tunable optical element, which have a reflective element, such as a Bragg grating. Generally, one grating unit filters a selected wavelength band of light and reflects the selected wavelength band to the other grating unit, which reflects a portion of the reflected wavelength band to an output of the optical filter. This double reflection of the selected wavelength band provides an optical filter having an effective filter function that is equal to the product of the individual filter functions of the grating units. To create a desired effective filter function, the gratings may be written to have different filter functions or grating profiles.
    Type: Grant
    Filed: August 26, 2000
    Date of Patent: June 10, 2008
    Assignee: CiDRA Corporation
    Inventors: Michael A. Davis, Alan D. Kersey, Martin A. Putnam, Timothy J. Bailey
  • Publication number: 20080129990
    Abstract: A method and apparatus for performing an assay process, featuring providing microbeads in a solution, each microbead having a particle substrate with a grating with a superposition of different predetermined regular periodic variations of the index of refraction disposed in the particle along a grating axis and indicative of a code; placing the microbeads on an alignment substrate; reading codes of the microbeads and the position thereof on the alignment substrate; reading the fluorescence on each microbead and the position order thereof on the alignment substrate; and determining an assay result based on bead position order and bead code of the earlier reading steps.
    Type: Application
    Filed: November 30, 2006
    Publication date: June 5, 2008
    Inventors: John Moon, Alan D. Kersey, Martin A. Putnam, Tuo Li
  • Patent number: 7375890
    Abstract: A method of manufacturing optical identification elements that includes forming a diffraction grating in a fiber substrate along a longitudinal axis of the substrate. The grating includes a resultant refractive index variation. The method also includes cutting the substrate transversely to form a plurality of optical identification elements that have the grating therein along substantially the entire length of the elements. Each of the elements has substantially the same resultant refractive index variation.
    Type: Grant
    Filed: June 16, 2006
    Date of Patent: May 20, 2008
    Assignee: Cyvera Corporation
    Inventors: Martin A. Putnam, John Moon, Paul S. Szczepanek, Tuo Li, Anthony Rauseo, Joseph Traynor
  • Publication number: 20080085565
    Abstract: Microparticles 8 includes an optical substrate 10 having at least one diffraction grating 12 disposed therein. The grating 12 having a plurality of colocated pitches ? which represent a unique identification digital code that is detected when illuminated by incident light 24. The incident light 24 may be directed transversely from the side of the substrate 10 with a narrow band (single wavelength) or multiple wavelength source, in which case the code is represented by a spatial distribution of light or a wavelength spectrum, respectively. The code may be digital binary or may be other numerical bases. The micro-particles 8 can provide a large number of unique codes, e.g., greater than 67 million codes, and can withstand harsh environments. The micro-particles 8 are functionalized by coating them with a material/substance of interest, which are then used to perform multiplexed experiments involving chemical processes, e.g., DNA testing and combinatorial chemistry.
    Type: Application
    Filed: October 6, 2006
    Publication date: April 10, 2008
    Inventors: John A. Moon, Martin A. Putnam
  • Patent number: 7349158
    Abstract: Microparticles 8 includes an optical substrate 10 having at least one diffraction grating 12 disposed therein. The grating 12 having a plurality of colocated pitches ? which represent a unique identification digital code that is detected when illuminated by incident light 24. The incident light 24 may be directed transversely from the side of the substrate 10 with a narrow band (single wavelength) or multiple wavelength source, in which case the code is represented by a spatial distribution of light or a wavelength spectrum, respectively. The code may be digital binary or may be other numerical bases. The micro-particles 8 can provide a large number of unique codes, e.g., greater than 67 million codes, and can withstand harsh environments. The micro-particles 8 are functionalized by coating them with a material/substance of interest, which are then used to perform multiplexed experiments involving chemical processes, e.g., DNA testing and combinatorial chemistry.
    Type: Grant
    Filed: September 12, 2003
    Date of Patent: March 25, 2008
    Assignee: Cyvera Corporation
    Inventors: John A. Moon, Martin A. Putnam
  • Publication number: 20070236796
    Abstract: A method for manufacturing a diffusion grating-based optical identification element is provided. The optical identification element includes a known optical substrate, having an optical diffraction grating disposed in the volume of the substrate. A large number of substrates or microbeads having unique identification codes can be manufactured by winding a substrate, such as a fiber, around a polygonal shaped cage/basket to form a fiber ribbon having flat sections. A grating writing station writes one or more gratings into each flat section to form a unique code to this section. Each flat section of fibers of the fiber ribbon is written with the same gratings to provide the same identification code, or alternatively each flat section may be have a different grating(s) written therein so that each section has a different identification code. The fiber ribbon is then removed from the cage and diced to form a groups of optical identification elements, each group having unique optical identification codes.
    Type: Application
    Filed: June 16, 2006
    Publication date: October 11, 2007
    Inventors: Martin Putnam, John Moon, Paul Szczepanek, Tuo Li, Anthony Rauseo, Joseph Traynor
  • Patent number: 7269316
    Abstract: The present invention provides a new and unique method for increasing the photosensitivity of a large diameter optical waveguide having a cross-section of at least about 0.3 millimeters. The method features loading the large diameter optical waveguide with a photosensitizing gas at a pressure at least about 4000 pounds per square inch (PSI) at a temperature of at least about 250° Celsius. The photosensitizing gas may be hydrogen, Deuterium or other suitable gas. The method also includes the step of using a particular large diameter optical waveguide having a core more than 1000 microns from the surface thereof. The method may be used as part of a process for writing a Bragg grating in an inner core or a cladding of the large diameter optical waveguide.
    Type: Grant
    Filed: May 11, 2006
    Date of Patent: September 11, 2007
    Assignee: CIDRA Corporation
    Inventors: Jerin J. Russell, Martin A. Putnam, Jay W. Dawson, Trevor W. MacDougall, John R. Troll
  • Publication number: 20070121181
    Abstract: An optical identification element for identifying an item comprises a binder material and one or more materials embedded in the binder material. The one or more materials provide an encoded composite X-ray diffraction pattern when illuminated by an X-ray beam. The encoded composite X-ray diffraction pattern is indicative of the item. The one or more materials are preferably powdered crystal materials. The optical identification element may be shaped as a microbead or a macrobead. Alternatively, the binder material may be in the form of a thread or fiber. The labeled item may be selected from the group, comprising: large or small objects, products, solids, powders, liquids, gases, plants, pharmaceuticals, currency, ID cards, minerals, cells and/or animals. The item may be a chemical or a DNA sequence.
    Type: Application
    Filed: November 16, 2006
    Publication date: May 31, 2007
    Inventors: John Moon, Martin Putnam, Alan Kersey, Paul Szczepanek
  • Patent number: 7209606
    Abstract: An optical sensing device including a force-applying assembly for providing a force and a Fabry-Perot (FP) element including a large-diameter waveguide having a core and having a cavity in line with the core, the cavity having reflective surfaces and having an optical path length related to the distance between the reflective surfaces, the FP element being coupled to the force so that the optical path length changes according to the force, the FP element for providing an output optical signal containing information about a parameter that relates to the force. Sometimes the large-diameter waveguide is formed by collapsing a glass tube, having a bore and having an outer diameter of about one millimeter, onto a pair of optical fibers arranged in tandem in the bore and separated by a predetermined distance, and respective end faces of the optical fibers form the cavity and are coated with a wholly or partially reflective material.
    Type: Grant
    Filed: May 24, 2005
    Date of Patent: April 24, 2007
    Assignee: Weatherford/Lamb, Inc.
    Inventors: Alan D. Kersey, Martin A. Putnam, Mark R. Fernald, Robert N. Brucato, James S. Sirkis
  • Patent number: 7190522
    Abstract: An optical identification element having a synthesized chemical attached thereto includes an optical substrate having at least one diffraction grating disposed therein, the grating having a resultant refractive variation at a grating location, said grating being embedded within a substantially single material of said optical substrate; the grating providing an output optical signal indicative of a code when illuminated by an incident light signal propagating in free space, the code identifying at least one of the element and the chemical, the output signal not being a result of laser action with the grating when illuminated by said incident light signal; and the synthesized chemical being attached to the substrate.
    Type: Grant
    Filed: September 12, 2003
    Date of Patent: March 13, 2007
    Assignee: CyVera Corporation
    Inventors: John Moon, Martin A. Putnam
  • Publication number: 20070028651
    Abstract: The present invention provides a method for making a multicore large diameter optical waveguide having a cross-section of at least about 0.3 millimeters, two or more inner cores, a cladding surrounding the two or more inner cores, and one or more side holes for reducing the bulk modulus of compressibility and maintaining the anti-buckling strength of the large diameter optical waveguide. The method features the steps of: assembling a preform for drawing a multicore large diameter optical waveguide having a cross-section of at least about 0.3 millimeters, by providing an outer tube having a cross-section of at least about 0.3 millimeters and arranging two or more preform elements in relation to the outer tube; heating the preform; and drawing the large diameter optical waveguide from the heated preform. In one embodiment, the method also includes the step of arranging at least one inner tube inside the outer tube.
    Type: Application
    Filed: July 25, 2006
    Publication date: February 8, 2007
    Inventors: Edward Dowd, Joseph Baraglia, Andrew Kuczma, Brian Pike, Thomas Engel, Martin Putnam