Patents by Inventor Thomas C. Evans, Jr.

Thomas C. Evans, Jr. has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9963687
    Abstract: This disclosure provides, among other things, a composition comprising: comprising a fusion protein comprising: (a) a DNA polymerase; and (b) a heterologous sequence-specific DNA binding domain. A method for copying a DNA template, as well as a kit for performing the same, are also described.
    Type: Grant
    Filed: February 17, 2016
    Date of Patent: May 8, 2018
    Assignee: New England Biolabs, Inc.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, Jr., Theodore B. Davis, Andrew Gardner
  • Patent number: 9920305
    Abstract: Compositions and methods are provided for improved reverse transcriptases and their uses in reverse transcription where the improvement may include increased temperature, increased salt, increased activity and/or increased dUTP tolerance.
    Type: Grant
    Filed: October 16, 2014
    Date of Patent: March 20, 2018
    Assignee: New England Biolabs, Inc.
    Inventors: Yinhua Zhang, Thomas C. Evans, Jr.
  • Patent number: 9920358
    Abstract: Provided herein is a method for reducing amplification of non-template molecules in a nucleic acid sample. In certain embodiments, the method involves adding a helicase to a reaction mixture for non-helicase-dependent amplification of target nucleic acid.
    Type: Grant
    Filed: June 27, 2014
    Date of Patent: March 20, 2018
    Assignee: New England Biolabs, Inc.
    Inventors: Nathan Tanner, Thomas C. Evans, Jr.
  • Publication number: 20180051341
    Abstract: Provided herein, among other things, is a method for reducing sequencing errors caused by mechanical DNA fragmentation. In some embodiments, this method may comprise: (a) obtaining a DNA sample; (b) mechanically fragmenting the DNA sample to produce a template; (c) treating the fragmented DNA with a plurality of DNA repair enzymes; and (d) obtaining a sequence of the fragmented DNA. The treatment step (c) reduces the number of fragmentation induced errors.
    Type: Application
    Filed: January 24, 2017
    Publication date: February 22, 2018
    Applicant: New England Biolabs, Inc.
    Inventors: Thomas C. Evans, Jr., Laurence Ettwiller, Lixin Chen, Pingfang Liu
  • Publication number: 20180037884
    Abstract: Compositions and methods for performing a template-switching reaction are provided that may include reducing or eliminating concatemerization of the template-switching oligonucleotide (TSO). In some embodiments, the composition may comprise: a reverse transcriptase; a TSO that includes a recognition sequence for a site-specific double strand nucleic acid cleaving enzyme, wherein the TSO has at its 3? end at least one nucleotide capable of hybridizing to at least one or more non-templated nucleotides added to a templated cDNA strand by the reverse transcriptase; and a site-specific double strand nucleic acid cleaving enzyme that cleaves the TSO at the recognition sequence.
    Type: Application
    Filed: August 18, 2016
    Publication date: February 8, 2018
    Applicant: New England Biolabs, Inc.
    Inventors: Shengxi Guan, Thomas C. Evans, JR., Nicole Nichols, Yanxia Bei
  • Publication number: 20170152494
    Abstract: This disclosure provides, among other things, a composition comprising: comprising a fusion protein comprising: (a) a DNA polymerase; and (b) a heterologous sequence-specific DNA binding domain. A method for copying a DNA template, as well as a kit for performing the same, are also described.
    Type: Application
    Filed: February 14, 2017
    Publication date: June 1, 2017
    Applicant: New England Biolabs, Inc.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, Jr., Theodore B. Davis, Andrew Gardner
  • Publication number: 20170152493
    Abstract: This disclosure provides, among other things, a composition comprising: comprising a fusion protein comprising: (a) a DNA polymerase; and (b) a heterologous sequence-specific DNA binding domain. A method for copying a DNA template, as well as a kit for performing the same, are also described.
    Type: Application
    Filed: February 14, 2017
    Publication date: June 1, 2017
    Applicant: New England Biolabs, Inc.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, JR., Theodore B. Davis, Andrew Gardner
  • Patent number: 9499811
    Abstract: Compositions and methods are provided for enhancing enzymatic ligation between nucleic acid fragments that relies on one or more small molecule enhancers having a size of less than 1000 daltons. For example, enhancement of ligation efficiencies are observed for double-stranded nucleic acid fragments that are blunt-ended, have a single nucleotide overhang at the ligation end, or have staggered ends compared to ligation under similar conditions in the absence of the one or more small molecule ligation enhancer. The use of small molecule enhancers for ligating nucleic acids results in an increased number of transformed host cells after transformation with the ligated molecules. This enhancement can be observed with chemically transformed host cells and with host cells transformed by electroporation.
    Type: Grant
    Filed: February 26, 2014
    Date of Patent: November 22, 2016
    Assignee: New England Biolabs, Inc.
    Inventors: Rebecca Kucera, Thomas C. Evans, Jr.
  • Patent number: 9447445
    Abstract: This disclosure provides, among other things, a composition comprising: a 5? exonuclease; a strand-displacing polymerase; and optionally a single strand DNA binding protein and/or a ligase. A method for polynucleotide assembly to form a synthon, as well as a kit for performing the same, are also described.
    Type: Grant
    Filed: August 27, 2015
    Date of Patent: September 20, 2016
    Assignee: New England Biolabs, Inc.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, Jr., Theodore B. Davis, Andrew Gardner
  • Publication number: 20160237483
    Abstract: Provided herein is a method for reducing amplification of non-template molecules in a nucleic acid sample. In certain embodiments, the method involves adding a helicase to a reaction mixture for non-helicase-dependent amplification of target nucleic acid.
    Type: Application
    Filed: June 27, 2014
    Publication date: August 18, 2016
    Applicant: New England Biolabs, Inc.
    Inventors: Nathan Tanner, Thomas C. Evans, JR.
  • Publication number: 20160160193
    Abstract: This disclosure provides, among other things, a composition comprising: comprising a fusion protein comprising: (a) a DNA polymerase; and (b) a heterologous sequence-specific DNA binding domain. A method for copying a DNA template, as well as a kit for performing the same, are also described.
    Type: Application
    Filed: February 17, 2016
    Publication date: June 9, 2016
    Applicant: New England Biolabs, Inc.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, JR., Theodore B. Davis, Andrew Gardner
  • Patent number: 9315797
    Abstract: Compositions and methods are provided that relate to solubilized phospholipids and their use in stabilizing nucleic acid polymerases. For example, a phospholipid with a tail containing at least 8 carbons can be solubilized in the presence of an amphipathic molecule.
    Type: Grant
    Filed: October 9, 2014
    Date of Patent: April 19, 2016
    Assignee: New England Biolabs, Inc.
    Inventors: Donald Johnson, Thomas C. Evans, Jr.
  • Publication number: 20160060671
    Abstract: This disclosure provides, among other things, a composition comprising: a 5? exonuclease; a strand-displacing polymerase; and optionally a single strand DNA binding protein and/or a ligase. A method for polynucleotide assembly to form a synthon, as well as a kit for performing the same, are also described.
    Type: Application
    Filed: August 27, 2015
    Publication date: March 3, 2016
    Applicant: NEW ENGLAND BIOLABS, INC.
    Inventors: Pei-Chung Hsieh, Luo Sun, Thomas C. Evans, JR., Theodore B. Davis, Andrew Gardner
  • Publication number: 20160002716
    Abstract: Compositions and methods are provided for ligating polynucleotides having a length that is greater than 8 nucleotides on an RNA splint. The ligation reaction provides consistent results in high or low ATP concentrations. The reaction can occur rapidly and is generally at least 10 fold more efficient than T4DNA ligase under optimal conditions for T4DNA ligase and the reaction time is less than 6 hours for example, less than 1 hour.
    Type: Application
    Filed: August 28, 2015
    Publication date: January 7, 2016
    Inventors: Gregory Lohman, Thomas C. Evans, JR., Larry A. McReynolds
  • Publication number: 20150322472
    Abstract: Compositions and methods are provided for loop mediated isothermal amplification in which single stranded binding proteins are shown to protect primers from non-specific extension and to stimulate the rate of threshold amplification.
    Type: Application
    Filed: July 27, 2015
    Publication date: November 12, 2015
    Applicant: NEW ENGLAND BIOLABS, INC.
    Inventors: Nathan Tanner, Thomas C. Evans, JR.
  • Publication number: 20150315597
    Abstract: Compositions and methods are provided for inhibiting a DNA binding enzyme from reacting with non-target DNA at a temperature below the reaction temperature. The inhibitor is a synthetic nucleic acid which is single stranded but may fold to form at least one double stranded region designed to melt at a temperature which is lower than the reaction temperature, and at least one single stranded region where the single stranded region at the 5? end contains at least one unnatural and/or modified nucleotide and optionally a sequence at the 3? end contains one or more derivative nucleotide or linkages.
    Type: Application
    Filed: July 13, 2015
    Publication date: November 5, 2015
    Applicant: NEW ENGLAND BIOLABS, INC.
    Inventors: Jennifer Ong, Donald Johnson, Thomas C. Evans, JR., Lucia Greenough
  • Patent number: 9157073
    Abstract: Novel proteins having DNA polymerase are described which have utility in amplification reactions and have improved properties over Bst polymerase such as for example enhanced reverse transcriptase activity.
    Type: Grant
    Filed: July 29, 2015
    Date of Patent: October 13, 2015
    Assignee: New England Biolabs, Inc.
    Inventors: Jennifer Ong, Thomas C. Evans, Jr., Nathan Tanner
  • Patent number: 9127258
    Abstract: Novel proteins having DNA polymerase are described which have utility in amplification reactions and have improved properties over Bst polymerase such as for example enhanced reverse transcriptase activity.
    Type: Grant
    Filed: February 11, 2015
    Date of Patent: September 8, 2015
    Assignee: New England Biolabs, Inc.
    Inventors: Jennifer Ong, Thomas C. Evans, Jr., Nathan Tanner
  • Patent number: 9121046
    Abstract: Compositions and methods are provided for loop mediated isothermal amplification in which single stranded binding proteins are shown to protect primers from non-specific extension and to stimulate the rate of threshold amplification.
    Type: Grant
    Filed: November 7, 2012
    Date of Patent: September 1, 2015
    Assignee: New England Biolabs, Inc.
    Inventors: Nathan Tanner, Thomas C. Evans, Jr.
  • Publication number: 20150152396
    Abstract: Novel proteins having DNA polymerase are described which have utility in amplification reactions and have improved properties over Bst polymerase such as for example enhanced reverse transcriptase activity.
    Type: Application
    Filed: February 11, 2015
    Publication date: June 4, 2015
    Inventors: Jennifer Ong, Thomas C. Evans, JR., Nathan Tanner