Patents by Inventor Thomas Gerard Barry

Thomas Gerard Barry has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11085090
    Abstract: A method for determining the presence or absence of a member of a group of bacterial organisms in a sample, wherein the method comprises determining whether a target region of the smpB gene is present in said sample is provided. Primers, probes and kits for use in these methods also form part of the invention, as does the use of an smpB gene target region to detect the presence or absence of a member of a group of bacterial organisms in a sample, in a range of clinical and non-clinical applications.
    Type: Grant
    Filed: May 23, 2016
    Date of Patent: August 10, 2021
    Assignee: National University of Ireland, Galway
    Inventors: Kate Mary Reddington, Nina Tuite, Elizabeth Minogue, Thomas Gerard Barry
  • Patent number: 9994918
    Abstract: The present invention relates to a multiplex in vitro nucleic acid amplification method for identifying a species of the Mycobacterium tuberculosis complex present in a sample. The method includes detecting the presence or absence of a plurality of nucleic acid molecule targets in the sample in one reaction, wherein at least one of the nucleic acid molecule targets is present in the genome of one or more, but not all, of the species of the Mycobacterium tuberculosis complex. The invention also includes kits containing primers or probes for conducting this method, nucleic acids useful for performing this method and diagnostic techniques using these nucleic acids.
    Type: Grant
    Filed: November 6, 2015
    Date of Patent: June 12, 2018
    Assignee: National University of Ireland, Galway
    Inventors: Kate Mary Reddington, Thomas Gerard Barry, Justin Joseph O'Grady, Terence James Smith
  • Publication number: 20180155766
    Abstract: A method for determining the presence or absence of a member of a group of bacterial organisms in a sample, wherein the method comprises determining whether a target region of the smpB gene is present in said sample is provided. Primers, probes and kits for use in these methods also form part of the invention, as does the use of an smpB gene target region to detect the presence or absence of a member of a group of bacterial organisms in a sample, in a range of clinical and non-clinical applications.
    Type: Application
    Filed: May 23, 2016
    Publication date: June 7, 2018
    Inventors: Kate Mary Reddington, Nina Tuite, Elizabeth Minogue, Thomas Gerard Barry
  • Patent number: 9944996
    Abstract: The current invention relates to a diagnostic kit for a yeast or fungal species comprising at least one oligonucleotide probe capable of binding to at least a portion of the eIF2y gene or its corresponding mRNA.
    Type: Grant
    Filed: June 15, 2009
    Date of Patent: April 17, 2018
    Assignee: National University of Ireland, Galway
    Inventors: Thomas Gerard Barry, Majella Maher, Terry James Smith, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff
  • Patent number: 9745636
    Abstract: The invention relates to the SWI5 gene, the corresponding RNA, specific probes, primers and oligonucleotides related thereto and their use in diagnostic assays to detect and/or discriminate between fungal and yeast species.
    Type: Grant
    Filed: June 15, 2009
    Date of Patent: August 29, 2017
    Assignee: National University of Ireland, Galway
    Inventors: Thomas Gerard Barry, Majella Maher, Terry James Smith, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff
  • Patent number: 9458514
    Abstract: The present invention use of to a portion of the RPS7 gene or its corresponding mRNA in a diagnostic assay for fungal and yeast species and sequences for use in such assays and methods.
    Type: Grant
    Filed: December 14, 2007
    Date of Patent: October 4, 2016
    Assignee: National University of Ireland, Galway
    Inventors: Thomas Gerard Barry, Terence James Smith, Majella Maher
  • Publication number: 20160194688
    Abstract: The present invention relates to a multiplex in vitro nucleic acid amplification method for identifying a species of the Mycobacterium tuberculosis complex present in a sample. The method includes detecting the presence or absence of a plurality of nucleic acid molecule targets in the sample in one reaction, wherein at least one of the nucleic acid molecule targets is present in the genome of one or more, but not all, of the species of the Mycobacterium tuberculosis complex. The invention also includes kits containing primers or probes for conducting this method, nucleic acids useful for performing this method and diagnostic techniques using these nucleic acids.
    Type: Application
    Filed: November 6, 2015
    Publication date: July 7, 2016
    Inventors: Kate Mary Reddington, Thomas Gerard Barry, Justin Joseph O'Grady, Terence James Smith
  • Patent number: 9243298
    Abstract: The current invention relates to a diagnostic kit for a bacterial species and/or fungal and/or yeast species comprising at least one oligonucleotide probe capable of binding to at least a portion of the LepA and/or Guf1 genes or its corresponding mRNA.
    Type: Grant
    Filed: June 15, 2009
    Date of Patent: January 26, 2016
    Assignee: National University of Ireland, Galway
    Inventors: Thomas Gerard Barry, Majella Maher, Terence James Smith, Justin O'Grady
  • Patent number: 9206483
    Abstract: The present invention relates to a multiplex in vitro nucleic acid amplification method for identifying a species of the Mycobacterium tuberculosis complex present in a sample. The method includes detecting the presence or absence of a plurality of nucleic acid molecule targets in the sample in one reaction, wherein at least one of the nucleic acid molecule targets is present in the genome of one or more, but not all, of the species of the Mycobacterium tuberculosis complex. The invention also includes kits containing primers or probes for conducting this method, nucleic acids useful for performing this method and diagnostic techniques using these nucleic acids.
    Type: Grant
    Filed: May 25, 2011
    Date of Patent: December 8, 2015
    Assignee: National University of Ireland, Galway
    Inventors: Kate Mary Reddington, Thomas Gerard Barry, Justin Joseph O'Grady, Terence James Smith
  • Patent number: 8946127
    Abstract: Use of the ssrA gene or tmRNA, an RNA transcript of the ssrA gene, or fragments thereof as target regions in a nucleic acid probe assay for the detection and identification of prokaryotic and/or eukaryotic organisms is described. Nucleotide sequence alignment of tmRNA sequences from various organisms can be used to identify regions of homology and non-homology within the sequences which in turn can be used to design both genus specific and species specific oligonucleotide probes. These newly identified regions of homology and non-homology provide the basis of identifying and detecting organisms at the molecular level. Oligonucleotide probes identified in this way can be used to detect tmRNA in samples thereby giving an indication of the viability of non-viral organisms present in various sample types.
    Type: Grant
    Filed: March 4, 2013
    Date of Patent: February 3, 2015
    Assignees: Enterprise Ireland, National University of Ireland
    Inventors: Thomas Gerard Barry, Terence James Smith
  • Publication number: 20130296179
    Abstract: Use of the ssrA gene or tmRNA, an RNA transcript of the ssrA gene, or fragments thereof as target regions in a nucleic acid probe assay for the detection and identification of prokaryotic and/or eukaryotic organisms is described. Nucleotide sequence alignment of tmRNA sequences from various organisms can be used to identify regions of homology and non-homology within the sequences which in turn can be used to design both genus specific and species specific oligonucleotide probes. These newly identified regions of homology and non-homology provide the basis of identifying and detecting organisms at the molecular level. Oligonucleotide probes identified in this way can be used to detect tmRNA in samples thereby giving an indication of the viability of non-viral organisms present in various sample types.
    Type: Application
    Filed: March 4, 2013
    Publication date: November 7, 2013
    Inventors: Thomas Gerard BARRY, Terence James SMITH
  • Publication number: 20130274121
    Abstract: The present invention relates to a multiplex in vitro nucleic acid amplification method for identifying a species of the Mycobacterium tuberculosis complex present in a sample. The method includes detecting the presence or absence of a plurality of nucleic acid molecule targets in the sample in one reaction, wherein at least one of the nucleic acid molecule targets is present in the genome of one or more, but not all, of the species of the Mycobacterium tuberculosis complex. The invention also includes kits containing primers or probes for conducting this method, nucleic acids useful for performing this method and diagnostic techniques using these nucleic acids.
    Type: Application
    Filed: May 25, 2011
    Publication date: October 17, 2013
    Inventors: Kate Mary Reddington, Thomas Gerard Barry, Justin Joseph O'Grady, Terence James Smith
  • Publication number: 20120258453
    Abstract: Use of the ssrA gene or tmRNA, an RNA transcript of the ssrA gene, or fragments thereof as target regions in a nucleic acid probe assay for the detection and identification of prokaryotic and/or eukaryotic organisms is described. Nucleotide sequence alignment of tmRNA sequences from various organisms can be used to identify regions of homology and non-homology within the sequences which in turn can be used to design both genus specific and species specific oligonucleotide probes. These newly identified regions of homology and non-homology provide the basis of identifying and detecting organisms at the molecular level. Oligonucleotide probes identified in this way can be used to detect tmRNA in samples thereby giving an indication of the viability of non-viral organisms present in various sample types.
    Type: Application
    Filed: May 3, 2010
    Publication date: October 11, 2012
    Inventors: Thomas Gerard Barry, Terence James Smith
  • Publication number: 20120094283
    Abstract: The present invention relates to nucleic acid primers and probes for use in the identification of one or more yeast species. More specifically the invention relates to the Ace2 gene, the corresponding RNA, specific probes, primers and oligonucleotides related thereto and their use in diagnostic assays to detect and/or discriminate between yeast species.
    Type: Application
    Filed: June 15, 2009
    Publication date: April 19, 2012
    Inventors: Thomas Gerard Barry, Terry James Smith, Majella Maher, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff
  • Publication number: 20110218335
    Abstract: The current invention relates to a diagnostic kit for a yeast or fungal species comprising at least one oligonucleotide probe capable of binding to at least a portion of the eIF2y gene or its corresponding mRNA.
    Type: Application
    Filed: June 15, 2009
    Publication date: September 8, 2011
    Inventors: Thomas Gerard Barry, Majella Maher, Terry James Smith, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff
  • Publication number: 20110217703
    Abstract: The present invention relates to nucleic acid primers and probes to detect one or more fungal and yeast species. More specifically the invention relates to the P2, P2A and P2B gene sequences (also known as 60S acidic ribosomal protein P2, RLA-2-ASPFU, Allergen ASP f8 or Afp2), the corresponding RNA, specific probes, primers and oligonucleotides related thereto and their use in diagnostic assays to detect and/or discriminate fungal and yeast species.
    Type: Application
    Filed: June 15, 2009
    Publication date: September 8, 2011
    Inventors: Thomas Gerard Barry, Terry James Smith, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff, Majella Maher
  • Publication number: 20110217704
    Abstract: The current invention relates to a diagnostic kit for a bacterial species and/or fungal and/or yeast species comprising at least one oligonucleotide probe capable of binding to at least a portion of the LepA and/or Guf1 genes or its corresponding mRNA.
    Type: Application
    Filed: June 15, 2009
    Publication date: September 8, 2011
    Inventors: Thomas Gerard Barry, Majella Maher, Terence James Smith, Justin O'Grady
  • Publication number: 20110212445
    Abstract: The invention relates to the SWI5 gene, the corresponding RNA, specific probes, primers and oligonucleotides related thereto and their use in diagnostic assays to detect and/or discriminate between fungal and yeast species.
    Type: Application
    Filed: June 15, 2009
    Publication date: September 1, 2011
    Inventors: Thomas Gerard Barry, Majella Maher, Terry James Smith, Marcin Jankiewicz, Louise O'Connor, Nina Tuite, Sinead Lahiff
  • Patent number: 7972777
    Abstract: Use of the ssrA gene or tmRNA, an RNA transcript of the ssrA gene, or fragments thereof as target regions in a nucleic acid probe assay for the detection and identification of prokaryotic and/or eukaryotic organisms is described. Nucleotide sequence alignment of tmRNA sequences from various organisms can be used to identify regions of homology and non-homology within the sequences which in turn can be used to design both genus specific and species specific oligonucleotide probes. These newly identified regions of homology and non-homology provide the basis of identifying and detecting organisms at the molecular level. Oligonucleotide probes identified in this way can be used to detect tmRNA in samples thereby giving an indication of the viability of non-viral organisms present in various sample types.
    Type: Grant
    Filed: May 15, 2000
    Date of Patent: July 5, 2011
    Assignees: Enterprise Ireland, National University of Ireland, Galway
    Inventors: Thomas Gerard Barry, Terence James Smith
  • Publication number: 20110111398
    Abstract: Use of the ssrA gene or tmRNA, an RNA transcript of the ssrA gene, or fragments thereof as target regions in a nucleic acid probe assay for the detection and identification of prokaryotic and/or eukaryotic organisms is described. Nucleotide sequence alignment of tmRNA sequences from various organisms can be used to identify regions of homology and non-homology within the sequences which in turn can be used to design both genus specific and species specific oligonucleotide probes. These newly identified regions of homology and non-homology provide the basis of identifying and detecting organisms at the molecular level. Oligonucleotide probes identified in this way can be used to detect tmRNA in samples thereby giving an indication of the viability of non-viral organisms present in various sample types.
    Type: Application
    Filed: May 3, 2010
    Publication date: May 12, 2011
    Inventors: Thomas Gerard BARRY, Terence James Smith