Patents by Inventor Utkan Demirci

Utkan Demirci has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20180280977
    Abstract: Systems and methods for levitating populations of moieties, cells, or other such units using one or more magnets in a microfluidic environment are provided. These systems and methods may be used to, for example, separate or sort heterogeneous populations of the units from one another, to assembly a multi-unit assembly during the levitating of the units, and to evaluate samples at the point of care in real-time. These systems and methods may also utilize a frame that enables an imaging device, such as a smartphone, to capture the units in real time as they are manipulated in the system.
    Type: Application
    Filed: September 30, 2016
    Publication date: October 4, 2018
    Inventors: Murat Baday, Naside Gozde Durmus, Semih Calamak, Utkan Demirci, Ronald W. Davis, Lars Steinmetz, Jaeyoung Yang, Thiruppathiraja Chinnasamy, Alessandro Tocchio
  • Publication number: 20180033128
    Abstract: Method and system for lensless, shadow optical imaging. Formation of a hologram shadow image having higher spatial resolution and lower noise level is accomplished by processing image information contained in multiple individual hologram shadow image frames acquired either under conditions of relative shift between point light source and the detector of the system or under stationary conditions, when system remains fixed in space and is devoid of any relative movement during the process of acquisition of individual image frames.
    Type: Application
    Filed: February 25, 2016
    Publication date: February 1, 2018
    Inventors: Antonio Carlos SOBIERANSKI, Utkan Demirci, Huseyin Cumhur Tekin, Fatih Inci
  • Publication number: 20170354972
    Abstract: Embodiments of the present disclosure relate to a platform for at least one of capturing, identifying and studying biological materials, and more particularly, to microfluidic channel platforms (for example) for detecting and/or identifying samples containing sperm cells, and isolating and analyzing captured sperm cells for DNA analysis (for example). In some embodiments, such microfluidic platforms integrate imaging technology. Such embodiments provide the ability to at least one of rapidly isolate and quantitate sperm cells from biological mixtures as occur in sexual assault evidence, for example, thereby enhancing identification of suspects in these cases and contributing to the safety of society.
    Type: Application
    Filed: September 30, 2015
    Publication date: December 14, 2017
    Inventors: Leonard Klevan, Fatih Inci, Utkan Demirci
  • Patent number: 9823249
    Abstract: A method of detecting a pathogen in a sample. The pathogen from the sample is captured with at least one recognition element. The sample is introduced to a paper-based microfluidic device having spaced electrodes disposed thereon. An impedance magnitude of the sample is measured across the spaced electrodes to detect a presence of the pathogen in the sample. A related paper-based microfluidic device and system are also disclosed.
    Type: Grant
    Filed: December 12, 2013
    Date of Patent: November 21, 2017
    Assignee: Brigham and Women's Hospital, Inc.
    Inventors: Utkan Demirci, Hadi Shafiee
  • Publication number: 20170266660
    Abstract: The technology described herein is directed to methods of cryopreservation, e.g., cryopreservation in a microfluidics format and methods of utilizing cells preserved by such methods.
    Type: Application
    Filed: September 30, 2015
    Publication date: September 21, 2017
    Applicant: THE BRIGHAM AND WOMEN'S HOSPITAL, INC.
    Inventors: Raymond Manohar ANCHAN, Sinan GUVEN, Utkan DEMIRCI, George Luther MUTTER
  • Publication number: 20170248592
    Abstract: A system and method for analyzing a biomarker in a biological sample is provided. A biological sample is loaded onto a microchip and an enzyme-linked immunosorbent assay specific to the biomarker is performed on the microchip. A color image of the microchip is generated using a mobile device and a color intensity of a selected portion of the color image is determined. The color intensity is correlated with a biomarker concentration using a baseline curve calculation and the concentration of the biomarker is then reported.
    Type: Application
    Filed: May 15, 2017
    Publication date: August 31, 2017
    Inventors: Shuqi Wang, Utkan Demirci, Bin Ye, Ragip Akbas
  • Publication number: 20170226473
    Abstract: A method of making a multi-layer patterned cell assembly is provided. A cell suspension liquid solution containing cells is loaded into a liquid-carrier chamber. The cells in the cell suspension liquid solution are let to settle down to the bottom of the chamber. Once the cells in the cell suspension liquid solution have gravitationally settled down to the bottom of the chamber, a hydrodynamic drag force is applied by using a vibration generator with a frequency and acceleration to the cells at the bottom of the chamber. The frequency and acceleration are designed to drag the settled cells into a three-dimensional pattern to form a multi-layer three-dimensional patterned cell assembly. The formed multi-layer three- dimensional patterned cell assembly can be transferred from the liquid-carrier chamber to an incubator to form a tissue culture. The bioengineered construct can be implanted for tissue engineering or other medical applications.
    Type: Application
    Filed: October 26, 2015
    Publication date: August 10, 2017
    Inventors: Pu Chen, Utkan Demirci, Sinan Güven
  • Publication number: 20160370386
    Abstract: Magnetic cell levitation and cell monitoring systems and methods are disclosed. A method for separating a heterogeneous population of cells is performed by placing a microcapillary channel containing the heterogeneous population of cells in a magnetically-responsive medium in the disclosed levitation system and separating the cells by balancing magnetic and corrected gravitational forces on the individual cells. A levitation system is also disclosed, having a microscope on which the microcapillary channel is placed and a set of two magnets between which the microcapillary channel is placed. Additionally, a method for monitoring cellular processes in real-time using the levitation system is disclosed.
    Type: Application
    Filed: February 26, 2015
    Publication date: December 22, 2016
    Inventors: Utkan Demirci, Ionita Ghiran, Savas Tasoglu, Ronald W. Davis, Lars Steinmetz, Naside Gozde Durmus, Huseyin Cumhur Tekin
  • Publication number: 20160362655
    Abstract: In one aspect, the present disclosure provides a method for self-assembly of magnetic building blocks, including distributing a plurality of building blocks in a liquid medium, each of the plurality of building blocks having a plurality of stable radicals, establishing a magnetic field interacting with at least a portion of the plurality of building blocks, guiding with the magnetic field the portion of the plurality of building blocks from a first location in the liquid medium to a second location in the liquid medium, assembling into a first construct the portion of the plurality of building blocks proximate the second location, and treating the first construct with at least one antioxidant to neutralize at least in part the plurality of stable radicals.
    Type: Application
    Filed: February 25, 2015
    Publication date: December 15, 2016
    Inventors: Utkan Demirci, Savas Tasoglu
  • Patent number: 9518914
    Abstract: System and method for point-of-care monitoring of neutrophils in a peritoneal dialysis sample with the use of a microfluidic system. The immunoassay based chip is configured to bound neutrophils to a microfluidic channel surface while leaving auxiliary cells and particles unattached and suspended in the sample and flushable with a wash buffer. Data representing images of neutrophils, formed by an (optionally lensless) imaging system, are processed to determine a count of neutrophils based on statistical parameters including characteristics of the microfluidic channel.
    Type: Grant
    Filed: March 24, 2013
    Date of Patent: December 13, 2016
    Assignee: BRIGHAM AND WOMEN'S HOSPITAL, INC.
    Inventors: Umut A. Gurkan, Utkan Demirci, Derya A. Yellin
  • Publication number: 20160290913
    Abstract: A system and method for sorting sperm is provided. The system includes a housing and a microfluidic system supported by the housing. The system also includes an inlet providing access to the microfluidic system to deliver sperm to the microfluidic system and an outlet providing access to the microfluidic system to harvest sorted sperm from the microfluidic system. The microfluidic system provides a flow path for sperm from the inlet to the outlet and includes at least one channel extending from the inlet to the outlet to allow sperm delivered to the microfluidic system through the inlet to progress along the flow path toward the outlet. The microfluidic system also includes a filter including a first plurality of micropores arranged in the flow path between the inlet and the outlet to cause sperm traveling along the flow path to move against through the filter and gravity to reach the outlet.
    Type: Application
    Filed: November 19, 2014
    Publication date: October 6, 2016
    Inventors: Utkan DEMIRCI, Waseem ASGHAR
  • Publication number: 20160145566
    Abstract: A method manufactures a structure based on reconfigurable assembly with faraday wave-based templates. The method includes the steps of providing a chamber containing a gas-liquid interface or liquid-liquid interface and dispersing a plurality of floaters at the gas-liquid interface or liquid-liquid interface. The method further includes oscillating the chamber along an axis orthogonal to the gas-liquid interface or liquid-liquid interface, thereby generating a standing wave formed by a parametric instability on the surface of the liquid. After formation of the standing wave, the floaters are allowed to self-assemble, at which point the floaters can be linked together.
    Type: Application
    Filed: June 20, 2014
    Publication date: May 26, 2016
    Inventors: Pu Chen, Utkan Demirci
  • Publication number: 20150309024
    Abstract: A method of detecting a pathogen in a sample. The pathogen from the sample is captured with at least one recognition element. The sample is introduced to a paper-based microfluidic device having spaced electrodes disposed thereon. An impedance magnitude of the sample is measured across the spaced electrodes to detect a presence of the pathogen in the sample. A related paper-based microfluidic device and system are also disclosed.
    Type: Application
    Filed: December 12, 2013
    Publication date: October 29, 2015
    Inventors: Utkan DEMIRCI, Hadi SHAFIEE
  • Publication number: 20150219545
    Abstract: System and method for point-of-care monitoring of neutrophils in a peritoneal dialysis sample with the use of a microfluidic system. The immunoassay based chip is configured to bound neutrophils to a microfluidic channel surface while leaving auxiliary cells and particles unattached and suspended in the sample and flushable with a wash buffer. Data representing images of neutrophils, formed by an (optionally lensless) imaging system, are processed to determine a count of neutrophils based on statistical parameters including characteristics of the microfluidic channel.
    Type: Application
    Filed: March 24, 2013
    Publication date: August 6, 2015
    Inventors: Umut A. GURKAN, Utkan DEMIRCI, Derya A. YELLIN
  • Publication number: 20150160218
    Abstract: A nanoplasmonic platform can be used for the detection and quantification of multiple HIV subtypes in whole blood with localized surface plasmon resonance. Among other things, this nanoplasmonic platform provides a viable way to detection and quantification of viral load at a point of care with significantly less cost, time, and laboratory resources than existing methods of detection. Although an example of HIV detection in whole blood is provided, the nanoplasmonic platform is adaptable to detect other pathogens and infectious agents or macromolecules.
    Type: Application
    Filed: July 3, 2013
    Publication date: June 11, 2015
    Inventors: Utkan Demirci, Fatih Inci
  • Patent number: 8911957
    Abstract: The invention features methods, devices, and kits for the isolation of analytes (e.g., a cell). A sample containing a desired analyte is introduced into a microfluidic device containing moieties that bind the desired analyte. A shear stress is applied that is great enough to prevent binding of undesired analytes and low enough to allow binding of the analyte of interest. Once bound, the desired analytes can be analyzed (e.g., counted). The invention also features methods for determining a shear stress for isolating a desired analyte.
    Type: Grant
    Filed: March 15, 2007
    Date of Patent: December 16, 2014
    Assignee: The General Hospital Corporation
    Inventors: Daniel Irimia, Xuanhong Cheng, Mehmet Toner, Utkan Demirci, William Rodriguez
  • Patent number: 8852875
    Abstract: The invention features methods of quantifying cells in a sample by lysing the cells followed by the measurement of at least one intracellular component. Methods of the invention are especially useful for quantifying small numbers of cells, e.g., over a large surface area or volume compared to the cell size. In a preferred embodiment, methods of the invention are performed using a microfluidic device.
    Type: Grant
    Filed: April 21, 2008
    Date of Patent: October 7, 2014
    Assignees: The General Hospital Corporation, Purdue Research Foundation
    Inventors: Mehmet Toner, Rashid Bashir, Xuanhong Cheng, Utkan Demirci, Daniel Irimia, William R. Rodriguez, Liju Yang, Lee Zamir, Yi-Shao Liu
  • Publication number: 20140248656
    Abstract: A method for sorting motile cells includes introducing an initial population of motile cells into an inlet port of a microfluidic channel, the initial population of motile cells having a first average motility; incubating the population of motile cells in the microfluidic channel; and collecting a sorted population of motile cells at an outlet port of the microfluidic channel. The sorted population of motile cells has a second average motility higher than the first average motility.
    Type: Application
    Filed: May 18, 2012
    Publication date: September 4, 2014
    Applicant: THE BRIGHAM AND WOMEN S HOSPITAL, INC.
    Inventors: Utkan Demirci, Xiaohui Zhang, Emre Kayaalp, Hooman Safaee, Savas Tasoglu
  • Publication number: 20140242612
    Abstract: A system and method for analyzing a biomarker in a biological sample is provided. A biological sample is loaded onto a microchip and an enzyme-linked immunosorbent assay specific to the biomarker is performed on the microchip. A color image of the microchip is generated using a mobile device and a color intensity of a selected portion of the color image is determined. The color intensity is correlated with a biomarker concentration using a baseline curve calculation and the concentration of the biomarker is then reported.
    Type: Application
    Filed: July 16, 2012
    Publication date: August 28, 2014
    Inventors: Shuqi Wang, Utkan Demirci, Bin Ye, Ragip Akbas
  • Publication number: 20120251999
    Abstract: The embodiments of the invention described herein relate to systems and methods for the vitrification of biological samples. Vitrification is achieved by generating nanodroplets of a solution comprising the biological sample with a means that can be automated and adapted to high-throughput applications.
    Type: Application
    Filed: February 1, 2012
    Publication date: October 4, 2012
    Applicant: THE BRIGHAM AND WOMEN'S HOSPITAL, INC.
    Inventors: Utkan DEMIRCI, Emre KAYAALP, Sangjun MOON, Young Seok SONG, Xiaohui ZHANG