Patents by Inventor Vladimir Makarov

Vladimir Makarov has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10731194
    Abstract: The present invention is directed to methods and compositions for adding tails of specific lengths to a substrate polynucleotide. The invention also contemplates methods and compositions for immobilization of tailed substrates to a solid support. The disclosure contemplates that the attenuator molecule is any biomolecule that associates with a tail sequence added to a substrate polynucleotide and controls the addition of a tail sequence to the 3? end of the substrate polynucleotide. The sequence that is added to the substrate polynucleotide is referred to herein as a tail sequence, or simply a tail, and the process of adding a nucleotide to a substrate polynucleotide is referred to herein as tailing.
    Type: Grant
    Filed: February 17, 2018
    Date of Patent: August 4, 2020
    Assignee: Swift Biosciences, Inc.
    Inventors: Vladimir Makarov, Laurie Kurihara
  • Patent number: 10480030
    Abstract: The present invention provides a novel technology that involves improved primer design. These primer pairs have a wide range of applications and provide high sensitivity and specificity.
    Type: Grant
    Filed: November 27, 2013
    Date of Patent: November 19, 2019
    Assignee: SWIFT BIOSCIENCES, INC.
    Inventors: Vladimir Makarov, Sergey V. Chupreta
  • Publication number: 20190323075
    Abstract: The invention relates to polynucleotide combinations and their use in allele-specific enrichment, amplification, and detection. The disclosure also provides methods to multiplex various target DNA molecules in a single tube with high sensitivity and specificity.
    Type: Application
    Filed: July 5, 2019
    Publication date: October 24, 2019
    Inventor: Vladimir Makarov
  • Patent number: 10385388
    Abstract: The invention relates to polynucleotide combinations and their use in allele-specific enrichment, amplification, and detection. The disclosure also provides methods to multiplex various target DNA molecules in a single tube with high sensitivity and specificity. The disclosure provides a polynucleotide competitor that comprises a sequence that is fully complementary to a first target DNA polynucleotide region (T1) such that the competitor polynucleotide will hybridize to the first target DNA polynucleotide region under appropriate conditions. In another aspect, the polynucleotide competitor comprises a mismatch to a non-target DNA polynucleotide that is a sequence variant of the first target DNA polynucleotide region (T1*).
    Type: Grant
    Filed: December 5, 2014
    Date of Patent: August 20, 2019
    Assignee: SWIFT BIOSCIENCES, INC.
    Inventor: Vladimir Makarov
  • Publication number: 20190241935
    Abstract: Methods for performing multiplex PCR-based enrichment of a target substrate are provided. Systems and methods for generating a sequencing library are also provided.
    Type: Application
    Filed: April 19, 2019
    Publication date: August 8, 2019
    Inventors: VLADIMIR MAKAROV, JULIE LALIBERTE
  • Publication number: 20190218605
    Abstract: The present disclosure describes a method of adapter ligation to the ends of fragmented double-stranded DNA molecules.
    Type: Application
    Filed: January 11, 2019
    Publication date: July 18, 2019
    Inventors: Vladimir Makarov, Julie Laliberte
  • Publication number: 20190211374
    Abstract: A bottleneck in the Next Generation Sequencing (NGS) workflow is the quantification of libraries for accurate pooling and loading of the sequencing instrument flow cell or chip. Disclosed herein are methods that improve performance and reduce time compared to existing methods.
    Type: Application
    Filed: March 6, 2019
    Publication date: July 11, 2019
    Inventors: Vladimir Makarov, Sergey Chupreta
  • Patent number: 10316357
    Abstract: Compositions and methods for enhanced adapter ligation are provided. The compositions and methods can be useful for next generation sequencing (NGS) library preparation and can result in higher yields in an NGS library.
    Type: Grant
    Filed: July 29, 2016
    Date of Patent: June 11, 2019
    Assignee: Swift Biosciences, Inc.
    Inventors: Vladimir Makarov, Julie Laliberte
  • Patent number: 10316359
    Abstract: Methods for the preparation of PCR reaction mixtures and for performing multiplex PCR amplification which limit the production of non-target amplicons are provided. Production of non-target amplicons is limited because the non-target amplicons have complementary 5? and 3? ends as a result of the target-specific primer designs such that the non-target amplicons can form stable secondary structure during the annealing step.
    Type: Grant
    Filed: August 31, 2016
    Date of Patent: June 11, 2019
    Assignee: Swift Biosciences, Inc.
    Inventors: Vladimir Makarov, Julie Laliberte
  • Patent number: 10208338
    Abstract: The present disclosure describes a method of adapter ligation to the ends of fragmented double-stranded DNA molecules.
    Type: Grant
    Filed: March 3, 2015
    Date of Patent: February 19, 2019
    Assignee: SWIFT BIOSCIENCES, INC.
    Inventors: Vladimir Makarov, Julie Laliberte
  • Publication number: 20190050234
    Abstract: A system includes a central processing unit (CPU) and components, a particular one of including logic to participate in a portion of a boot sequence of the system, where the portion of the boot sequence begins prior to activation of the CPU. The particular component is to send one or more signals to interact with another one of the components in the system during the portion of the boot sequence. The particular component includes a timer block to generate a set of timestamps during the portion of the boot sequence, where the set of timestamps indicates an amount of execution time of the particular component. The particular component sends the set of timestamps to the other component in a particular one of the one or more signals, where the set of timestamps are used to determine execution time of system components to complete the boot sequence.
    Type: Application
    Filed: September 28, 2018
    Publication date: February 14, 2019
    Inventors: Mark Segal, Vladimir Makarov, Udy Hershkovitz
  • Publication number: 20180237794
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Application
    Filed: January 22, 2018
    Publication date: August 23, 2018
    Inventors: Nickolai ALEXANDROV, Vyacheslav BROVER, Kenneth A. FELDMANN, Vladimir MAKAROV, Timothy J. SWALLER, Gregory NADZAN, Peter MASCIA, Maxim TROUKHAN, Joel RARANG, James BURNS, Kyle VOS STRACHE
  • Publication number: 20180223321
    Abstract: The present invention is directed to methods and compositions for adding tails of specific lengths to a substrate poly—nucleotide. The invention also contemplates methods and compositions for immobilization of tailed substrates to a solid support. The disclosure contemplates that the attenuator molecule is any biomolecule that associates with a tail sequence added to a substrate polynucleotide and controls the addition of a tail sequence to the 3? end of the substrate polynucleotide. The sequence that is added to the substrate polynucleotide is referred to herein as a tail sequence, or simply a tail, and the process of adding a nucleotide to a substrate polynucleotide is referred to herein as tailing.
    Type: Application
    Filed: February 17, 2018
    Publication date: August 9, 2018
    Inventors: VLADIMIR MAKAROV, LAURIE KURIHARA
  • Patent number: 9931609
    Abstract: The invention provides a composite of silver nanoparticles decorated with graphene quantum dots (Ag-GQDs) using pulsed laser synthesis. The nanocomposites were functionalized with polyethylene glycol (PEG). A concentration of 150 ?g/mL of Ag-GQDs, a non-toxic level for human cells, exhibits strong antibacterial activity against both Gram-Positive and Gram-Negative Bacteria.
    Type: Grant
    Filed: April 11, 2016
    Date of Patent: April 3, 2018
    Assignee: University of Puerto Rico
    Inventors: Khaled Habiba, Vladimir Makarov, Brad R Weiner, Gerardo Morell
  • Patent number: 9920328
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Grant
    Filed: September 28, 2012
    Date of Patent: March 20, 2018
    Assignee: Ceres, Inc.
    Inventors: Nickolai Alexandrov, Vyacheslav Brover, Kenneth A. Feldmann, Vladimir Makarov, Timothy J. Swaller, Gregory Nadzan, Peter Mascia, Maxim Troukhan, Joel Rarang, James Burns, Kyle Vos Strache
  • Patent number: 9896709
    Abstract: The present invention is directed to methods and compositions for adding tails of specific lengths to a substrate polynucleotide. The invention also contemplates methods and compositions for immobilization of tailed substrates to a solid support. The disclosure contemplates that the attenuator molecule is any biomolecule that associates with a tail sequence added to a substrate polynucleotide and controls the addition of a tail sequence to the 3? end of the substrate polynucleotide. The sequence that is added to the substrate polynucleotide is referred to herein as a tail sequence, or simply a tail, and the process of adding a nucleotide to a substrate polynucleotide is referred to herein as tailing.
    Type: Grant
    Filed: March 13, 2013
    Date of Patent: February 20, 2018
    Assignee: SWIFT BIOSCIENCES, INC.
    Inventors: Vladimir Makarov, Laurie Kurihara
  • Publication number: 20170088887
    Abstract: The present disclosure describes a method of adapter ligation to the ends of fragmented double-stranded DNA molecules.
    Type: Application
    Filed: March 3, 2015
    Publication date: March 30, 2017
    Inventors: Vladimir Makarov, Julie Laliberte
  • Publication number: 20170037422
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Application
    Filed: September 28, 2012
    Publication date: February 9, 2017
    Inventors: Nickolai ALEXANDROV, Vyacheslav BROVER, Kenneth A. FELDMANN, Vladimir MAKAROV, Timothy J. SWALLER, Gregory NADZAN, Peter MASCIA, Maxim TROUKHAN, Joel RARANG, James BURNS, Kyle VOS STRACHE
  • Publication number: 20170016046
    Abstract: Methods of isolating target double-stranded polynucleotides with internal single-stranded regions are provided. Compositions and kits comprising double-stranded polynucleotides with internal single-stranded regions are also provided.
    Type: Application
    Filed: November 18, 2014
    Publication date: January 19, 2017
    Inventor: VLADIMIR MAKAROV
  • Patent number: 9533882
    Abstract: Novel sp3 rich diamond-like carbon (DLC) nanorod films were fabricated by hot filament chemical vapor deposition technique. The results are indicative of a bottom-up self-assembly synthesis process, which results in a hierarchical structure that consists of microscale papillae comprising numerous nanorods. The papillae have diameters ranging from 2 to 4 ?m and the nanorods have diameters in the 35-45 nm range. A growth mechanism based on the vapor liquid-solid mechanism is proposed that accounts for the morphological aspects in the micro- and nano-scales.
    Type: Grant
    Filed: March 24, 2011
    Date of Patent: January 3, 2017
    Assignee: University of Puerto Rico
    Inventors: Deepak Varshney, Vladimir Makarov, Gerardo Morell, Puja Saxena, Brad Weiner