Peptides and chemical compound for inhibition of SHP2 function

The present invention relates to the inhibition of the function of SHP2 by both anti-SHP2 peptides and the chemical compound 4-(2-sulfaminoethyl)benzoic acid, SEBA, and SEBA derivatives binding to the phosphotyrosyl phosphatase domain of SHP2 thereby inhibiting the function of SHP2 both in vitro and in vivo. In addition, the inhibition of SHP2 may be useful as a treatment for human disease, and it has been shown that interfering with SHP2 function using the anti-SHP2 peptides and SEBA compounds reverses cell transformation and induces remission of preformed tumors in vivo demonstrating a possible treatment for cancer.

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Description
CROSS-REFERENCE TO RELATED APPLICATIONS

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STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT

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REFERENCE TO SEQUENCE LISTING, A TABLE, OR A COMPUTER PROGRAM LISTING COMPACT DISC APPENDIX

This application contains a Sequence Listing submitted as follows. The following sequence listing is incorporated by reference herein in its entirety and is identical to the sequence listing contained in the body of the application and contains no new matter.

SEQ ID: 1 LENGTH: 5 SEQUENCE: Asp-Ala-Asp-Val-Tyr SEQ ID: 2 LENGTH: 5 SEQUENCE: Asp-Ala-Asp-Gly-Tyr SEQ ID: 3 LENGTH: 5 SEQUENCE: Glu-Ala-Asp-Val-Tyr SEQ ID: 4 LENGTH: 3 SEQUENCE: Asp-Val-Tyr SEQ ID: 5 LENGTH: 3 SEQUENCE: Asp-Gly-Tyr

BACKGROUND OF THE INVENTION

1. Field of Invention

This invention relates to the inhibition of the function of SHP2 by anti-SHP2 peptides, the chemical compounds 4-(2-sulfaminoethyl)benzoic acid (“SEBA”), and SEBA derivatives binding to the phosphotyrosyl phosphatase domain of SHP2.

2. Description of the Prior Art

Protein Tyr phosphorylation and dephosphorylation reactions play major role in the transduction of growth factor signals from the surface to the interior of the cell. Phosphorylation involves addition of a phosphate moiety to the hydroxyl group of the Tyr residue in proteins or peptides, while dephosphorylation refers to the removal of such phosphate from the phosphotyrosine. Phosphorylation reactions are catalyzed by Tyr kinases, while dephosphorylation reactions are catalyzed by phosphotyrosyl phosphatases (“PTPs”). Depending on their location in the cell, Tyr kinases are generally classified as cytoplasmic Tyr kinases (“CTKs”) or receptor Tyr kinases (“RTKs”). Most commonly cited CTKs include Src, focal adhesion kinase (“FAK”) and janus kinases (“JAKs”) (17, 19, 47, 72, 73), while the most commonly studied RTKs are the epidermal growth factor receptor (“EGFR”) family, the platelet growth factor receptor (“PDGFR”) family, the fibroblast growth factor receptor (“FGFR”) family and the insulin receptor (30, 45, 82, 96). Similarly, PTPs are classified as cytoplasmic or receptor type depending on their location in the cell (7, 8, 66, 93). This invention focuses on SHP2, the cytoplasmic PTP that has been shown to positively modulate RTK signaling, particularly, signaling by the epidermal growth factor receptor (“EGFR”) family.

SHP2 possesses two tandemly-arranged Src homology 2 (“SH2”) domains in the N-terminal region and a PTP domain in the C terminal region (32, 33). Both of these domains are essential for its biological activity (14, 32, 33, 78, 79, 86). It also possesses two tyrosine phosphorylation sites and a proline-rich motif (-PXXP-) in the extreme C-terminal region (10, 29, 69). The SHP2 protein assumes a “closed conformation” when inactive and an “open conformation” when active. In the closed conformation, the N-SH2 domain interacts with the PTP domain thus physically impeding the PTP domain from binding to target substrates. Upon engagement of the N-SH2 domain with phosphotyrosyl residues, the protein assumes an open conformation, relieving the PTP domain and rendering the enzyme active (41). In the N-SH2 domain, Asp61 and Glu76 are the mediators of this interaction. As a result, mutation of these residues creates a constitutively active SHP2 (70). Recent findings show that constitutively active SHP2 mutatants naturally occur in Noonan Syndrome-associated leukemia (87-89).

In the catalytic process of most PTPs, including SHP2, Asp in the WPD loop and the conserved residues in the signature motif play critical roles in the dephosphorylation reaction (34). In SHP2, Asp425 acts as a proton donor for the leaving phenolate group of the substrate and as an acceptor during the hydrolysis of the cysteinyl phosphate intermediate. The Cys residue conducts a nucleophilic attack on the phosphate moiety, while the Arg residue (positively charged) serves as a coordinator of the negatively charged phosphate group on the substrate. Basically, the Arg residue mediates substrate binding to the active site of the enzyme, whereas the Cys and Asp residues catalyze the dephosphorylation reaction. In addition, Thr466 is essential for SHP2 catalysis (61), but its specific role has not been established. Mutation of this residue to Ala provides a new substrate-trapping mutant of SHP2 (61). SHP2 is a unique PTP that positively modulates RTK signaling in vertebrates (32, 33, 35, 38). Interaction of SHP2 with Tyr-phosphorylated RTKs and adaptor proteins such as Gab1 and 2 and FRS1 and 2 through its SH2 domains is important for its function (28, 38, 51, 55, 80, 92). This interaction recruits SHP2 to its substrate microdomain. Deletion of the N-SH2 domain or mutation of critical residues in the active site of the enzyme such as Cys459 to Ser or Arg465 to Glu inactivates SHP2, suggesting that both domains are important for its function. These mutants have served as dominant-negative counterparts (“DN-SHP2”) in SHP2 studies as their expression inhibits the activation of the Ras-ERK (ERK for extracellular signal regulated kinase 1 and 2) and the PI3K-Akt (PI3K for phosphatidylinositol 3-kinase) signaling pathways downstream of RTKs (5, 6, 53, 54, 92).

SHP2 enhances the signaling potential of the EGFR family of RTKs. The EGFR family comprises four members (“EGFR1-4”) and represents one of the most extensively studied RTKs in the mammalian system (30, 48, 57, 58, 82, 95). The human homologues are called HER1, HER2, HER3 and HER4. Because HER1 is commonly known as EGFR, this abbreviation will be used hereinafter. All family members are composed of an extracellular ligand-binding region, a single-pass transmembrane region and a cytoplasmic region containing a tyrosine kinase domain (except HER3 that has dysfunctional kinase domain) and tyrosine autophosphorylation sites. A family of a dozen growth factors, including epidermal growth factor (“EGF”), transforming growth factor-α (“TGFα”) and neuregulins, activate these receptors by binding to the extracellular region (except HER2 that does not require ligand binding for activation). The binding of a cognate ligand induces homo- or hetero-dimerization of EGFR molecules leading to the activation of their tyrosine kinase domain and autophosphorylation of specific tyrosine residues in the C-terminal region or Tyr phosphorylation of downstream substrates (24, 26, 28, 43, 51, 59, 71). Phosphorylated tyrosine residues serve as binding sites for SH2 domain-containing signaling molecules such as the Grb2-SOS complex, the phosphatidylinositol 3-kinase (“PI3K”), SHP2 and others (74), which leads to formation of multimeric signaling complexes. At least two known functions are effected by these interactions: recruitment of enzymes to substrate micro domains (e.g. Grb2-SOS) and induction of enzyme activity (egs. PI3K, SHP2) (2, 12, 33, 38, 55, 59, 80, 83). The immediate response to stimulation with EGF or the related ligands is the activation of the Ras-ERK (ERK for extracellular regulated kinase 1 and 2) and the PI3K-Akt (Akt is sometimes referred to as protein kinase B) signaling pathways, which induce mitogenesis and cell survival, respectively. Structural and biochemical analyses have shown that HER2 does not require ligand binding for activation of its tyrosine kinase domain (36). Thus, HER2 can potentially homodimerize in the absence of ligand (especially under conditions of overexpression) or heterodimerize with ligand-stimulated family members. Generally, HER2 is regarded as the preferred partner of heterodimerization with the other family members most probably due to the unconstrained conformation of the dimerization arm of the extracellular region (36). In case of HER3, heterodimerization with other family member is the only mechanism for its activation because it lacks a functional Tyr kinase domain (42).

Regulation of cell shape and morphology by SHP2 has been correlated with its effect on actin cytoskeletal reorganization. Cells expressing dominant-negative SHP2 manifest an increased level of actin stress fiber formation and assume a flattened morphology, whereas cells expressing wild-type SHP2 show a low level of actin stress fiber formation and a more polarized morphology (46, 50, 84). These effects of SHP2 have been ascribed to its negative regulatory role of the Rho GTPase (25, 52, 84).

SHP2 suppresses cell adhesion and enhances motility (46, 50, 56, 102). However, the molecular basis underlying these effects is not clear. Cell migration requires a coordinated cycling between adhesion and detachment. In a tissue or in confluent monolayer of cultured cells, movement of a single cell in a defined direction involves modulation of its interaction with neighboring cells and the extracellular matrix (“ECM”). Adhesion of cells to the ECM is mediated by cell surface receptors called integrins. Integrin-ECM interaction recruits cytoplasmic tyrosine kinases (“CTK”) such as FAK, related focal tyrosine kinase (“RFTK”) or Pyk2 and Src (72, 81) to the plasma membrane. Autophosphorylation of FAK initiates the cascade of tyrosine phosphorylation reactions by recruiting Src to focal adhesions (72, 81). The adaptor proteins p130Cas and paxillin are the other major proteins known to participate in focal adhesion formations. The SH3 and Src-binding domains of p130Cas mediate interaction with FAK and Src, which in turn mediate Tyr phosphorylation (65, 76). Paxillin possesses lucine-rich motifs that promote its interaction with FAK and the other focal adhesion protein vinculin (21, 27). Paxillin also possesses Tyr phosphorylation sites that mediate SH2 domain interactions (99). The net effect is the aggregation of integrins, the formation of multi-protein complexes and the maturation of focal complexes to focal adhesions (56, 100). SHP2 has been repeatedly implicated in down regulating focal adhesions, but the molecular mechanism is not clear.

SHP2 mediates cell transformation induced by v-Src (39) and the constitutively active form of fibroblast growth factor receptor 3 (K650E-FGFR3) (6). In K650E-FGFR3-induced transformation, SHP2-mediated activation of the Ras-ERK and PI3K-Akt pathways was essential. Recently, it was demonstrated that SHP2 promotes K650E-FGFR3-induced transformation not only by promoting the activation of the Ras-ERK and PI3K-Akt pathways, but also by modulating the interaction of the actin cytoskeleton with adherens junction (23). The recent discovery of gain-of-function SHP2 mutations in Noonan syndrome and associated leukemia (15, 62, 89) and the subsequent demonstration of the development of lymphoid hyperplasia in transgenic mice expressing gain-of-function SHP2 mutants (9, 62) further support the importance of SHP2 in cancer.

The driving force behind this invention is that SHP2 is an essential transducer of cell transformation induced by Tyr kinase oncogenes, which in turn suggests that it promotes tumor growth. Recent reports have uncovered molecular mechanisms by which the phosphatase activity of SHP2 promotes signaling by Tyr kinases, particularly by the EGFR. The development of a substrate-trapping mutants of SHP2 was a breakthrough for understanding its molecular mechanism (4). Substrate trapping refers to the production of mutant phosphatases that retain substrate-binding ability or acquire enhanced substrate-binding ability, but are devoid of enzyme activity (34). Thus, by introducing mutations in the active site of SHP2, an efficient substrate trapping mutant termed DM-SHP2 (DM for double mutant) was developed (4). Using the DM-SHP2 as a reagent, the first biological substrate of SHP2, the EGFR, was identified and characterized. Subsequently, a molecular mechanism for SHP2 in promoting EGFR signaling was described. It was demonstrated that SHP2 promotes Ras activation by interfering with the process of Ras inactivation catalyzed by the Ras GTPase activating protein (RasGAP). Inhibition is achieved through the dephosphorylation of Tyr992 of the EGFR, which serves as RasGAP binding site (5).

Substrate-trapping and mass spectroscopic analysis showed that a-catenin also is a biological substrate of SHP2 (23). Tyr phosphorylation of α-catenin enhances its translocation to the plasma membrane and its interaction with β-catenin, leading to enhanced actin polymerization and stabilization of adherens junction-mediated intercellular adhesion, a phenomenon commensurate with loss of the transformation phenotype. Dephosphorylation of α-catenin by SHP2 suppresses intercellular adhesion and increases the cytosolic pool of β-catenin and its subsequent translocation to the nucleus (23) where it acts as a transcription factor for mitogenic genes such as cyclin D1 and c-myc (1, 13). In addition, inhibition of α-catenin enhances activation of the Ras-ERK and the PI3K-Akt pathways (23, 97), induces hyperproliferation of skin epithelium (97) and promotes cell transformation (22, 63). Therefore, SHP2 mediates β-catenin activation downstream of RTKs bypassing the need for Wnt ligand stimulation (23). The previously held notion was that β-catenin is activated downstream of the frizzled (FZ) and low-density lipoprotein related protein (“LRP5/6”) coreceptors following Wnt ligand stimulation (18, 49, 60).

In EGFR and HER2, SHP2 dephosphorylates negative-regulatory phosphorylation sites that serve as RasGAP binding sites. By doing so, SHP2 promotes the Ras-ERK and the PI3K-Akt signaling pathways (5). In α-catenin, SHP2 dephosphorylates a phosphotyrosyl that mediates interaction with β-catenin (23). This leads to suppression of adherens junction-mediated cell-cell interaction, an increase in cytosolic β-catenin pool and subsequent translocation of β-catenin to the nucleus where it acts as a transcription factor for mitogenic genes. Thus, through SHP2, EGFR and HER2 can activate, not only the Ras-ERK and the PI3K-Akt pathways, but also β-catenin signaling. Therefore, mediation of cell transformation by SHP2 is a complex process that involves modulation of the Ras-ERK and PI3K-Akt signaling pathways, intercellular adhesion, focal adhesion and actin cytoskeletal reorganization. These findings suggest that SHP2 could be a potential target for cancer treatment.

Examples that highlight the importance of SHP2 in growth factor signaling, cell transformation and cancer development are provided below. These results were based on inhibition of SHP2 either by dominant-negative SHP2 (DN-SHP2) expression or small interfering RNA (Si-RNA)-mediated ablation of the SHP2 protein. As known in the art, DN-SHP2 expression refers to ectopic expression of a dysfunctional mutant protein that competes with the endogenous counterpart and inhibits function. The controls for these experiments were vector alone and the wild type form of SHP2 (WT-SHP2). The indicated breast cancer cell lines were infected with retrovirus expressing vector alone, WT-SHP2 or DN-SHP2, and stable lines from each group were seeded in soft agar, a commonly used assay for testing anchorage-independent growth (3, 23). The MCF10A, the immortalized normal breast cell line, was used as a negative control for anchorage-independent growth. Expression of DN-SHP2 inhibited colony formation by all of the breast cancer cells used in this experiment, while expression of vector alone or WT-SHP2 did not cause any change (FIG. 1), As expected, the negative control MCF10A cells could not form colonies in soft agar during anchorage-independent growth studies. In addition, expression of DN-SHP2 modestly suppressed cell growth in all of the cells used in this study (FIG. 2). Together, these results show that SHP2 is important for cell proliferation and anchorage-independent growth of breast cancer cells.

The importance of SHP2 in cell transformation and growth factor signaling was further investigated by Si-RNA-mediated ablation of the SHP2 protein in the BT474 breast cancer cells that overexpress the HER2 oncogene. As known in the art, expression of Si-RNA in cells inhibits the translation of the corresponding messenger RNA (mRNA) by hybridizing to a specific complementary region within the mRNA. For the current work, stable cell lines harboring the SHP2 Si-RNA were produced by infection of the BT474 cells with retroviruses expressing the SHP2 Si-RNA under the control of a tetracycline-inducible system (BD Biosceinces). These cells express the SHP2 Si-RNA only when they were treated with tetracycline. Parent BT474 cells were used as controls (control) in these experiments. In addition, cells harboring the SHP2 Si-RNA (non-Si-RNA), but not treated with tetracycline were used as controls for the effect of retroviral infection and gene integration. Therefore, the experimental groups used in these studies included controls, non-Si-RNA and Si-RNA cells. Si-RNA-mediated ablation of the SHP2 protein induced reversion of the BT474 cells to a normal phenotype that compares with the cobblestone-like appearance of the MCF10A, the immortalized normal breast epithelial cell line (FIG. 3). It also inhibited anchorage independent growth in soft agar (FIG. 4) and led to re-differentiation of the BT474 cells back to normal as evidenced by acini formation in laminin-rich basement membrane (LRBM) cultures (FIG. 5). It should be noted that Si-RNA cells die in soft agar, but re-differentiate to normal under adherent two dimensional and LRBM cultures. These results demonstrate that SHP2 is important for the maintenance of the transformation phenotype of breast cancer cells. In addition, they show that interference with SHP2 function leads to re-differentiation of breast cancer cells to a normal phenotype.

In addition to morphological and growth behavior changes, Si-RNA-mediated ablation of the SHP2 protein inhibited EGF-induced signaling. The indicated cells were grown to subconfluency, serum starved for about 12 hours and then stimulated with 10 ng/ml EGF for varying time points. Lysates prepared from these cells were separated by denaturing polyacrylamide gel electrophoresis, transferred onto a nitrocellulose membrane and analyzed by western blotting with antibodies that recognize the activated forms of ERK1/2 and Akt. Si-RNA-mediated ablation of the SHP2 protein inhibited EGF-induced activation of these proteins (FIG. 6), suggesting that SHP2 is required for mitogenic and cell survival signals in breast cancer cells. Therefore, SHP2 has the potential to serve as a new drug target for the treatment of breast cancer.

BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWING

FIG. 1 is a colony formation in soft agar by several breast cancer cells expressing vector alone, WT-SHP2 and DN SHP2.

FIG. 2 is suppression of cell proliferation by the expression of DN-SHP2 in the BT474 breast cancer cell line.

FIG. 3 is induction of a normal epithelial phenotype in the BT474 breast cancer cells by Si-RNA-mediated ablation of the SHP2 protein

FIG. 4 is inhibition of anchorage-independent growth ability of the BT474 breast cancer cells in soft agar by Si-RNA-mediated ablation of the SHP2 protein.

FIG. 5 is induction of re-differentiation in the BT474 breast cancer cells to a normal acin-forming breast epithelial cells.

FIG. 6 is inhibition of epidermal growth factor-induced activation of ERK1/2 and Akt in the BT474 breast cancer cells by Si-RNA-mediated ablation of the SHP2 protein.

FIG. 7 are the functional groups for the modification of the WGMDY peptides at the Tyr residue or the R′ modification of the SEBA derivatives.

FIG. 8 is 4-(2-sulfaminoethyl)benzoic acid (SEBA).

FIG. 9 are the SEBA derivatives

FIG. 10 are the oligopeptides for modification at the R position of SEBA derivatives.

FIG. 11 is the anti-SHP2 peptide pWGMDY1 inhibition of phosphatase activity of SHP2.

FIG. 12 is the SEBA inhibition of phophastase activity of SHP2 shown in a protein gel.

FIG. 13 is the effect of pWGMDY on EGF-induced ERK1/2 and AKT activation.

 BRIEF SUMMARY OF THE INVENTION

The present invention pertains to the inhibition of SHP2 in vivo and in vitro. The mechanism of inhibition is the binding of specific inhibitors to the active of SHP2.

The present invention further details peptides that can inhibit the function of SHP2. The anti-SHP2 peptides are oligopeptides that are 3-5 amino acids long, in their native form or their conservative variants. These peptides have been given a common name termed WGMDY

Another aspect of the present invention is the ability to modify the anti-SHP2 peptides to create conservative variants. In this application the modification to create a conservative variant means: a) replacement of one amino acid by another to create a conservative variant; b) addition of a phosphate, a sulfate, amino-sulfate or an acetyl group to the single Tyr residue, c) introducing changes to side chains of amino acids, and d) making changes to the peptide backbone of the peptides.

Another object of the present invention is the chemical compound 4-(2-sulfaminoethyl) benzoic acid, SEBA (FIG. 8), and the use of this compound with anti-SHP2 function.

Another aspect of the present invention is the use of SEBA derivatives in the inhibition of the SHP2 function. The SEBA derivatives have the chemical formula

wherein R is selected from the functional group consisting of the amino acids sequence D-V; D-G; D-A; D-G-D-G; D-A-D-A; D-V-D-V; D-A-D-V; D-A-D-G; D-G-D-V; D-G-D-A; D-V-D-G; and D-V-D-A (also see FIG. 10) and R′ is selected from the functional groups acetate; phosphate, sulfate, and aminosulfate (also see FIG. 7).

A further aspect of the invention is the inhibition of SHP2 in the treatment of human disease, namely cancer.

DETAILED DESCRIPTION OF THE INVENTION

The present invention involves 1) anti-SHP2 peptides and their conservative variants and 2) a peptidomimetic anti-SHP2 compound SEBA and its derivatives for use in inhibiting SHP2 function both in vitro and in vivo. It also teaches that SHP2 is a potential therapeutic target for the treatment of cancer and that interfering with SHP2 function using the anti-SHP2 peptides and SEBA compounds reverses cell transformation and induces remission of preformed tumors in vivo. As used herein, the term anti-SHP2 peptides refers to oligopeptides that are 3-5 amino acids long, in their native form or their conservative variants. These peptides have been given a common name termed WGMDY. Conservative variants of WGMDY peptides means: a) replacement of one amino acid by another to create a conservative variant; b) addition of a phosphate, a sulfate, amino-sulfate or an acetyl group to the single Tyr residue, c) introducing changes to side chains of amino acids, and d) making changes to the peptide backbone of the peptides. Detailed sequences of WGMDY peptides (FIG. 7) and functional groups for modification at the Y (Tyr) residue (FIG. 8) are provided.

WGMDY Peptides

SEQ ID: 1 LENGTH: 5 SEQUENCE: Asp-Ala-Asp-Val-Tyr SEQ ID: 2 LENGTH: 5 SEQUENCE: Asp-Ala-Asp-Gly-Tyr SEQ ID: 3 LENGTH: 5 SEQUENCE: Glu-Ala-Asp-Val-Tyr SEQ ID: 4 LENGTH: 3 SEQUENCE: Asp-Val-Tyr SEQ ID: 5 LENGTH: 3 SEQUENCE: Asp-Gly-Tyr

Conservative amino acid substitutions within the context of the application are shown in the table below and can be used to create conservative variants which have changes in the amino acid sequence, but are similar in function due to the conservative nature of the change. A conservative change is best described as the substitution of an acidic amino acid for an acidic amino acid or a hydrophobic amino acid for a hydrophobic amino acid. The exchange of an amino acid for another amino acid of similar chemical properties creates a conservative variant.

Amino Acid Conservative variants Aspartic Acid, Asp, D Glutamic Acid, Glu, E Glycine, Gly, G Alanine, Ala or A Alanine, Ala, A Glycine, Gly, G Valine, Val, V Leucine, Leu, L Isoleucine, Ile, I Valine, Val, V Glycine, Gly, G Alanine, Ala, A Leucine, Leu, L Isoleucine, Ile, I Tyrosine, Tyr, Y Phenylalanine, Phe, F

As also used herein, the term SEBA refers to 4-(2-sulfaminoethyl)benzoic acid (FIG. 8), while the term SEBA derivatives refers to modified version of SEBA derivative shown in FIG. 9. Modifications to produce SEBA derivatives include covalent linkage of functional groups of FIG. 7 to the R′ and amino acid oligomers or their modified counterparts of FIG. 11 to the R. Modifications to amino acid oligomers linked to the R position refer to changes to the peptide bonds so as to confer resistance to peptidases or proteases, addition of hydrophobic groups or penetrating peptide sequences to enhance cellular uptake and changes to side chains of constituent amino acids to increase binding affinity to the target. In this context, the target is the active site of the SHP2 phosphatase domain.

In the context of the present invention, inhibition of SHP2 with WGMDY peptides and SEBA compounds refers to interfering with the normal function of SHP2. Inhibition is achieved by physical interaction of the WGMDY peptides and SEBA compounds with the active site of the phosphotyrosyl phosphatase domain of SHP2. This interaction blocks the binding of biological substrates to the same site. The overall effect is an increase in the Tyr phosphorylation level of biological substrates, leading to abrogation of the signal transducer role of SHP2. As described in the background and supporting evidences, the major signaling networks that are affected by SHP2 inhibition are the Ras-ERK, the PI3K-Akt and β-catenin signaling pathways. Consequently, promotion of cell proliferation, survival, transformation, migration and tumor growth by SHP2 is inhibited. The outstanding findings presented in FIGS. 1-6 clearly show that inhibition of SHP2 has the potential for the treatment of cancer. In addition, recent reports by the inventor (5, 23, 61) lend further support to this invention.

As outlined above, biological substrates of SHP2 were isolated by substrate-trapping techniques and then identified by a combination of mass spectroscopic and immunoblotting analysis (4, 5, 23). By employing site-directed mutagenesis, binding studies and functional analysis of mutants, target Tyr residues for the SHP2 phosphatase activity were identified (23, 61). Further site-directed mutagenesis and binding studies and computer-based comparison (FASTA) of amino acid sequences surrounding target Tyr residues showed a potential consensus motif for recognition of substrates by the active site of the SHP2 phosphatase domain. The characteristic features of this consensus motif are the Y (Tyr) residue that acts as a substrate when phosphorylated, the invariable D (Asp) residue at the −2 position (the amino acid immediately N-terminal to the Y is referred to as −1), hydrophobic residues at the −1 and −3 positions and a D or E (Glu) residue at the −4 position (FIG. 7). As is known in the art, amino acids in WGMDY peptides are covalently linked to each other through what is known as peptide bond. As is also known in the art, peptide bonds are formed between the carboxyl group of the N-terminal amino acid and the amine group of the next amino acid and so on.

Accumulating evidence indicates that SHP2 could serve as a therapeutic target for the treatment of cancer. In the context of the current invention, this conclusion is based on the following findings. First, SHP2 is a positive effector of EGFR and HER2 signaling and cell transformation receptors. And secondly, SHP2 is required for EGFR- and HER2-induced activation of 13-catenin, the major transducer of the Wnt signaling pathway. Thus, SHP2 integrates the EGFR/HER2 and 13-catenin signaling pathways. Because aberrant signaling by the EGFR, HER2 and β-catenin is implicated in the development of a variety of cancers, inhibition of SHP2 has the potential for cancer treatment

Aberrant EGFR and HER2 signaling is strongly associated with aggressive tumor growth which correlates with poor prognosis for patient survival. As a result, there has been a great deal of interest in the production of drugs that inactivate EGFR and HER2 in tumors. Approximately 50% of breast, ovarian, colorectal and lung cancers overexpress EGFR or HER2 due to gene amplification, and of these, the majority have gene rearrangements that result in constitutive activation of these receptors (44, 64, 67, 77, 101). Currently, several drugs that interfere with the functions of these proteins have been produced. Some are already in clinical use while others are in advanced stage of clinical trials. However, there have not been any breakthroughs. For instance, herceptin, the anti-HER2 drug currently in clinical use for breast cancer, slows tumor progression in only 30% of the patients. In the pipeline are drugs that interfere with the Tyr kinase domains of EGFR and HER2, most notably, traceva (erlotinib) and iressa (gefitinib). Traceva and iressa are currently in advanced clinical trials. Unfortunately, the outcome of these trials has not been promising. For instance, patients treated with standard chemotherapy in combination with Iressa did not show any significant increase in overall survival rates than those treated with chemotherapy alone (31, 68, 75). Although these drugs provide some benefit by lengthening the life of the patient by several months to few a years, the cancer usually recurs and the patient eventually dies even after combination therapy with other non-specific agents such as paclitaxel and cisplatin. The common problem in the treatment of breast and other forms of cancer has been the ability of a cancer cell to adjust and overcome targeted chemotherapy by activating parallel growth signals. Because SHP2 is an essential downstream effector of EGFR and HER2, inhibition of SHP2 with drugs that will be developed from pWGMDY and SEBA derivatives will have a much better outcome than anti-EGFR and anti-HER2 drugs.

Increased Wnt signaling either due to the presence of an abnormally high amount of Wnt ligands or defects in one or more of the multiprotein complexes that channel cytoplasmic β-catenin for degradation, results in stabilization of β-catenin leading to its translocation to the nucleus where it induces the expression of mitogenic genes (11, 16, 18, 20, 37, 60). In support of this phenomenon, MMTV-LTR-driven overexpressing of Wnt1 or constitutively active β-catenin or knockout of a-catenin expression consistently resulted in a hyperplastic breast tissue (40, 91). Therefore, biochemical defects that ultimately result in deregulated β-catenin can induce epithelial to mesenchymal transition (“EMT”) leading to cell transformation and tumor growth in the breast or other tissues. The similarity of a-catenin knockout to constitutively active β-catenin indicate that interference with a-catenin could also result in β-catenin stabilization and translocation to the nucleus. The findings in fibroblasts transformed with the constitutively active FGFR3 (23) and in the BT474 breast cancer cell line showed that SHP2 interferes with Tyr phosphorylation-dependent interaction of a-catenin with β-catenin. Therefore, under conditions of elevated Tyr phosphorylation, such as overexpression of EGFR or HER2, SHP2 can activate β-catenin even without Wnt stimulation.

To provide evidence on the use of WGMDY peptides to inhibit SHP2 function, WGMDY1 was fused to a 10-mer cell-penetrating peptide sequence of HIV tat-1 protein (85, 90, 94, 98) to aid internalization and custom synthesized as a phosphorylated form (pWGMDY1) and unphosphorylated form (WGMDY1). The anti-SHP2 effect of these preparations were first tested by in vitro phosphatase assays using purified glutathione S-transferase (GST) fusion of the phosphatase domain of SHP2 (denoted as P) as an enzyme and para-nitrophenolphosphate (denoted as pN) as an artificial substrate as described recently (61). Reactions containing buffer, P and pN only were used as negative controls for the dephosphorylation reactions. Para-nitrophenol phosphate (pN) is colorless in solution and as such has very low optical density. But, when dephosphorylated to para-nitrophenol, it exhibits a yellowish discoloration, acquiring an increased optical density that can be measured with a spectrophotometer. Absorption of visible light by para-nitrophenol phosphate peaks at a wave length of 405 nm. Therefore, reactions were followed with absorbance measurement (OD) at 405 nm in a plate reader spectrophotometer (TECAN). Absorbance at the 5 minutes time point was used for comparing the effect of pWGMDY1 on the phosphatase activity of P. As described previously, dephosphorylation of pN by P was more than 15-fold over basal after a 5 minute incubation period (61). Addition of pWGMDY1, but not WGMDY1, inhibited the dephosphorylation reaction (FIG. 11). Similar results were obtained when SEBA was used in place of pWGMDY (FIG. 12). These results demonstrate that pWGMDY1 and SEBA are SHP2 inhibitors.

To determine that pWGMDY1 can also be used to inhibit SHP2 in cells, the following experiments were performed. The BT474 breast cancer cells were treated with 5 μg/ml of pWGMDY1 or WGMDY1 for 30 minutes. They were then stimulated with EGF for varying time points. Total cell lysates prepared from these cells were analyzed by immunoblotting with specific antibodies that recognize the activated forms of these proteins. As shown in FIG. 13, pWGMDY inhibited ERK1/2 and Akt activation, while WGMDY did not. Note that ERK1/2 and Akt activation was sustained for more than 2 hours in the control WGMDY1-treated cells, while it was submaximal even at the 10 minute time point in the pWGMDY 1-treated cells. Anti-B-actin reblotting showed that total protein levels were comparable. These results demonstrate that pWGMDY1 inhibits the signal transduction role of SHP2 in intact cells.

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Claims

1. A SEBA derivative comprised of the structure

wherein R′ is selected from the functional group consisting of the amino acids sequence D-V; D-G; D-A; D-G-D-G; D-A-D-A; D-V-D-V; D-A-D-V; D-A-D-G; D-G-D-V; D-G-D-A; D-V-D-G; and D-V-D-A, and R is selected from the functional groups acetate, phosphate, sulfate, and aminosulfate.

2. A method to inhibit SHP2 function comprising a blocker preventing the binding of biological substrates to the active site of the phosphotyrosyl phosphatase domain of SHP2 wherein said blocker is a SEBA derivative comprising of

wherein R′ is selected from the functional group consisting of the amino acids sequence D-V; D-G; D-A; D-G-D-G; D-A-D-A; D-V-D-V; D-A-D-V; D-A-D-G; D-G-D-V; D-G-D-A; D-V-D-G; and D-V-D-A, and R is selected from the functional groups acetate;
phosphate, sulfate, and aminosulfate binding to said site.

3. The method to inhibit SHP2 function of claim 2 wherein an effective amount of said chemical compound is used in the treatment of a human disease.

4. The method to inhibit SHP2 function of claim 3 wherein said human disease is cancer.

5. A chemical compound SEBA comprising 4-(2-sulfaminoethyl)benzoic acid.

6. The chemical compound SEBA of claim 5 wherein an effective amount of said SEBA inhibits the function of SHP2 by binding to the active site of the phosphotyrosyl phosphatase domain of said SHP2.

7. The chemical compound SEBA of claim 6 wherein an effective amount of said SEBA is used in the treatment of a human disease.

8. The chemical compound SEBA of claim 7 wherein said human disease is cancer.

Patent History
Publication number: 20090042788
Type: Application
Filed: Aug 17, 2007
Publication Date: Feb 12, 2009
Inventors: Yehenew Mekonnen Agazie (Morgantown, WV), Peter Mico Gannett (Morgantown, WV)
Application Number: 11/893,643
Classifications
Current U.S. Class: 514/12
International Classification: A61K 38/00 (20060101); A61P 43/00 (20060101);