FIELD OF INVENTION This invention is in the field of the prevention and treatment of prostate cancer. More specifically, this invention relates to the use of flavopereirine and alstonine combinations in preventing and treating prostate cancer.
BACKGROUND OF THE INVENTION Prostate cancer is the most prevalent cancer in men. Diagnosis is based on a tissue biopsy, microscopic examination of a small section of the prostate. When the biopsy contains cancerous cells the therapeutic options generally include radio- and chemotherapies, hormone treatments as well as surgical removal of the prostate gland. It is well known that these treatments are frequently devastating for the patient and notwithstanding these therapies mortality from prostate cancer is high.
There is an urgent need for agents that prevent the advancement of prostate cancer. Indeed, of the approximately one million prostate biopsies performed in this country every year, by far the majority are negative. Yet these men suffer a range of symptoms associated with elevated PSA levels and benign prostatic hyperplasia affecting urinary and sexual function. These large groups of men with BPH (Benign Prostatic Hyperplasia) or elevated PSA, or with PIN (prostatic intraepithelial neoplasia), but with negative biopsies, are precancerous: they are at high risk of developing an aggressive prostate cancer and there have been no effective preventive treatments. Agents that forestall or significantly delay the onset of cancer in this population have remarkable therapeutic value.
Another large population of men is diagnosed with prostate cancer, but their biopsies reveal a low-grade form of the disease. This group is in the well-known ‘watchful waiting’ or ‘active surveillance’ category and when the rate of increase in their PSA levels is relatively rapid they are subject to the therapeutic interventions cited above. These large groups of men—those in watchful waiting and those with shorter PSA doubling times need agents that subdue their cancers, slow the rate of PSA increase, and prevent the progression of their cancers to a higher grade and more aggressive form. Such an agent would fill a major vacuum in healthcare for men.
A third population of men undergo one of the traditional therapies in which case their recovery is assessed by monitoring the rate of change or the doubling time of their PSA levels which serve as an indicator of how rapidly their cancer is likely to return. An agent that is effective in reducing PSA levels and in moderating PSA doubling times could be used in combination with traditional therapies to help prevent the recurrence of prostate cancer thus significantly extending the life of this population of cancer patients.
SUMMARY OF THE INVENTION The present invention includes compositions and methods for alleviating or avoiding the onset of the symptoms associated with prostate cancer, for treating low-grade prostate cancers and preventing their progression to more advanced cancers, and for decreasing PSA doubling times and thus preventing or delaying metastatic prostate cancer. The composition includes a mixture of flavopereirine and alstonine. Flavopereirine and alstonine are present in defined ratios relative to each other. The flavopereirine and alstonine may be present as plant extracts. The extract containing flavopereirine is derived from Pao Pereira and the extract containing alstonine is derived from Rauwolfia Vomitoria. The extract of flavopereirine to the extract of alstonine ratio is about 3-4:1 and is based on the active ingredients being in extract form, i.e. Pao Pereira extract to Rauwolfia Vomitoria extract. Alternatively the flavopereirine and alstonine may be present in purified chemical form, i.e. a combination of synthetic flavopereirine and synthetic alstonine. It is expected that the ratio will vary somewhat depending on the purity of the active ingredients in the case of the active ingredients being in extract form. The amounts are sufficient to induce apoptosis and disruption of the cell cycle and DNA damage response pathways in prostate cancer cells.
Any conventional modes of administration for compounds of this type are envisioned. Currently, oral administration is contemplated. Typical modes of this type would include tablets and capsules. These could be packaged in kit form with written instructions to facilitate a treatment regimen.
The population envisioned for treatment with the flavopereirine and alstonine mixture falls into three groups: 1) those subjects thought to be susceptible to prostate cancer; 2) those subjects with low-grade forms of prostate cancer with both low and high PSA doubling times; and 3) those subjects combining treatment with traditional medical therapies (specifically surgery, radiation, and cryo- and/or chemotherapy) Population number one could include such high-risk groups as males having a high PSA count, symptoms of BPH (Benign Prostatic Hyperplasia) or with PIN (prostatic intraepithelial neoplasia). This group will have negative biopsies and would be considered precancerous. The amount of the mixture is sufficient to alleviate the symptoms of BPH (Benign Prostatic Hyperplasia) or to lower elevated PSA levels over time. Population number two will have been diagnosed with prostate cancer and thus will be likely to have positive biopsies, but have non-aggressive tumors characterized by lower Gleason scores. This population will include men with relatively low rates of PSA increase as well as men with higher rates of PSA increase. The amount of the mixture is sufficient to slow the progression of prostate cancer to a more aggressive stage and to lower PSA levels and PSA doubling times. Population number three will have or will be undergoing some form of prostate cancer therapy (surgery, radiation, cryo- or chemotherapy). Used in combination with these therapies the amount of the mixture is sufficient to lower PSA doubling times.
The invention also includes a novel combination of these two extracts in relative amounts to prevent prostate cancer or alleviate symptoms of BPH, especially in precancerous men including men diagnosed with prostatic intraepithelial neoplasia (PIN). The extracts exert beneficial effects without the side effects normally associated with anti-cancer treatments. e Precancerous cell that are becoming cancerous are selectively killed by the mixture and the normal cells are left unaffected.
The invention also includes a method of preventing prostate carcinogenesis in patients having a precancerous precursor of prostate adenocarcinoma, elevated PSA, and Benign Prostatic Hyperplasia, but who do not as yet have prostate cancer. The invention further includes a method for reducing PSA levels and/or alleviating the symptoms of BPH.
The invention also includes a method of treating men with localized (non-metastatic) prostate cancer to prevent the development of higher-grade tumors and more aggressive disease. The cancer cells are selectively killed by the mixture and the normal cells are left unaffected.
The invention also includes a method of treating men with both long and short PSA doubling times and of lengthening the PSA doubling times. This treatment will help maintain the ‘watchful waiting’ status of men with long PSA doubling times and help prevent the onset of more aggressive or metastatic disease in men with short PSA doubling times.
The invention further provides a method of administering to an individual an orally effective dosage of the extracts in capsule or tablet form.
The invention provides a method for suppression or inhibition of prostate carcinogenesis, reduction of PSA levels, and reduction of the symptoms of BPH by administration of the preventive agent that consists of a combination of natural extracts derived from Pao Pereira and Rauwolfia Vomitoria.
The invention provides a mechanism of action for the preventive agent by induction of apoptosis and disruption of cell cycle and DNA damage response pathways in cancer cells. At optimal concentrations this mechanism is selective for cancer cells and it also contributes to the effectiveness of the preventive agent in reducing PSA levels and the symptoms of BPH.
BRIEF DESCRIPTION OF THE FIGURES FIG. 1 shows the results of LNCaP cell growth analyses following treatment with Rauwolfia and Pao extracts.
FIG. 2 shows the induction of apoptosis in LNCaP cells by both Rauwolfia and Pao extracts after 24 hours in terms of PARP cleavage and Caspase-3 activity.
FIG. 3 shows cell cycle analysis by FACS.
FIG. 4 (A and B) shows the results of a prostate cell tumor growth experiment.
FIG. 5 shows the results for the TUNEL staining assay.
FIG. 6 shows the corresponding statistical data for the TUNEL staining assay.
FIG. 7 shows the experimental results illustrating the suppression of LNCap tumor xenograft growth by Rauwolfia.
DESCRIPTION OF THE INVENTION Overview The present invention builds on the scientific research of M. Beljanski who first developed these extracts and demonstrated their selective activity against cancer cells in laboratory experiments and in animal studies. Beljanski provided evidence that the toxicity of these compounds is based on their interaction with the destabilized DNA that he found to be a primary characteristic of cancer cells.
The work described herein supports the correlation of the extent of DNA damage in prostate cells with cancer of the prostate; this also supports the specific diagnosis of a precancerous condition of the prostate. Also described is work demonstrating the mechanism of action involves induction of apoptosis and disruption of the cell cycle and DNA damage response pathways in prostate cancer cells. This is shown both in tissue culture and in an animal xenograft model. Uncovering the differential mechanisms of action of flavopereirine and alstonine supports the concept of using a specific combination of the extracts to obtain an enhanced therapeutic effect.
The classification of an intermediate or precancerous stage of prostate DNA damage indicated that these compounds would exert their toxic effect specifically on precancerous cells that are in transition to a cancerous state thereby preventing cancer in high-risk men and answering the urgent need of a very large patient population. These compounds also exert their toxic effect on cancer cells thereby preventing advancement to a higher grade and more aggressive form of prostate cancer.
Discovery of the Anti-Cancer Activity of Pao Pereira and Rauwolfia Vomitoria Extracts. The extract from Pao Pereira is prepared according to the protocol in U.S. Pat. No. 5,519,028. The extract from Rauwolfia Vomitoria is prepared according to the procedure in European Pat. No. EP-A-0 059 817. This procedure includes a partial purification step that eliminates toxic compounds (e.g. reserpine) from the product.
The biochemical activity of these two extracts was first analyzed in an in vitro assay called the Oncotest (U.S. Pat. No. 4,264,729). This test was originally designed to screen compounds for their carcinogenic potential and is based on differences in the secondary structure of DNAs isolated from cancer cells and from normal cells (Beljanski, IRCS Med. Sci. 1979. 7:476). Relative to purified normal DNA, purified cancer cell DNA exhibits greater chromicity (absorption of UV light) and greater activity when used as a template for in vitro DNA synthesis (Beljanski et al., Expl. Cell. Biol., 1981.49:220-231. This indicates that the hydrogen bonds in the double helix of cancer DNA are reproducibly disrupted resulting in openings or loops that increase UV absorption and enhance enzymatic activity in vitro. This fundamental difference in structure, the greater strand separation characteristic of cancer DNA, was referred to as DNA destabilization (Beljanski, Proceedings of the international seminar: Traditional Medicine: a Challenge to the 21st Century. 1992. Oxford and IBH Publishing Co.)
When known carcinogens are added to the Oncotest they promote a small increase in DNA synthesis with normal templates, but a much higher increase (5 to 10 fold) in DNA synthesis with cancer templates (Beljanski et al. Third NCI-EORTC Symposium on new drugs in cancer therapy. 1981. Institut Bordet, Bruxelles). Such compounds are thought to act by further opening the already comparatively relaxed structure of the cancer DNA thereby enhancing the access of enzymes to the template and enabling more DNA to be synthesized.
When the Pao and Rauwolfia extracts are used in the Oncotest they have the opposite affect of a carcinogen: chromicity is diminished and DNA synthesis from cancer DNA templates is inhibited (Beljanski, Expl. Cell. Biol. 1982.50: 79-87). Biochemical analysis of the extracts, including DNA binding assays, identified the active compounds as flavopereirine (in Pao Pereira) and alstonine (in Rauwolfia Vomitoria). Since the inhibitory effects shown by the extracts and their respective compounds is specific for cancer DNA, since there is no effect on normal DNA, and since very few of the hundreds of compounds that were screened gave these results, these extracts and the corresponding active compounds were further assessed for their potential as anti-cancer agents.
The extracts were subjected to a long series of tests to examine their effect on cultured cancer cells (Beljanski et al., IRCS Med. Sci. 1984. 12:587-588), on animals with various kinds of cancer (Beljanski et al., Oncology, 1986. 43:198-203), and ultimately in numerous human case studies. The extracts showed several consistent and noteworthy properties. First, at optimal concentrations, they stopped the proliferation of cancer cell lines maintained in the laboratory, while sparing healthy cells. They were toxic to cancer cells in mice, but did no harm to the mice. They have proven to have anti-cancer effects on a range of human malignancies, but have shown no significant side effects. The activity of these extracts is selective to cancer DNA, to cancer cells, and to the tumors of organisms with cancer. There is evidence that this selectivity is due, in part, to their preferential entry into cancer cells because of changes that occur in the outer membranes of these cells (Beljanski et al. International Journal of Oncology, 1996. 8:1143-1148). In the course of these experiments, the activity of the Pao Pereira extract (flavopereirine) (Beljanski, Genetics and Mol. Biol., 2000. 23, 1:29-33) and the Rauwolfia Vomitoria extract (alstonine) (unpublished data) were shown to inhibit the multiplication of a human prostate cancer cell line (PC3) to a similar extent. This result is significant in the context of the present invention because it demonstrates that both of the active compounds in the mixture are effective against cancer cells like PC-3 that do not respond to hormones.
For the Oncotest, cancer DNA was isolated from a range of cancerous tissues or cells including breast, lung, ovary, neurocarcinoma, Ehrlich ascites tumor cells, KB and HeLa and L cells. Normal DNA was isolated from healthy breast, lung, ovary, brain, primary kidney, Vero cells, or SIRC cells in culture. Cell lines exposed to Pao Pereira extract included: u251, CCF-STTG-1 SW 1088 and C6 (brain); LoVo, CaCo-2 (colon); Sk-Hep 1 (liver); A498 (kidney); G-361 (skin); Es 2, Sw 626 (ovary); ZR-75-1, MCF-7 (breast); MIA PaCa2 (pancreas); PC3 (prostate); and TT (thymus). Normal cell lines tested with Pao Pereira include CRL 1656 (brain); CCD-18Co (colon); Clone 9 (liver); NRK-49F (kidney); and CCD-97Sk (skin). A summary of anecdotal information concerning the use of the extracts for treating human cancer patients can be found in Beljanski, Mirko Beljanski ou La Chronique d'une “Fatwa” Scientifique, 2001, EVI Liberty Corp.
DNA Destabilization in Cancer Cells Recent studies by Malins et al. (Cancer related changes in prostate DNA as men age and early identification of metastasis in primary prostate tumors. Proc. Natl. Acad. Sci. 2003 April 29 100(9): 5401-5406) using Fourier Transform Mass Spectroscopy have shown that the DNA in prostate cancer cells is indeed different from the DNA of normal prostate cells. Malins et al. refer to the difference as an increase in disorder in the cancer DNA relative to normal DNA and these changes correlate with age and apparently with exposure to carcinogens. Malins et al were also able to reproducibly detect an interim stage of disorder reflecting a precancerous condition of the prostate (Malins et al. Models of DNA structure achieve almost perfect discrimination between normal prostate, benign prostatic hyperplasia (BPH), and adenocarcinoma and have a high potential for predicting BPH and prostate cancer. Proc. Natl. Acad. Sci. 1997 January 7; 94 (1): 259-264). This precancerous condition appears to correspond to the clinical condition known as prostatic intraepithelial neoplasia (PIN).
Malins et al. report that the presence of carcinogens in the prostate leads to the production of free radicals that physically damage the DNA yielding ‘potentially billions of altered structures.’ Many of these alterations will affect the hydrogen bonds that stabilize the DNA duplex. This could produce the openings in the helix structure reported by Beljanski.
Novel Data Supporting the Application of Pao Pereira and Rauwolfia Extracts for the Prevention of Prostate Cancer 1. Induction of Apoptosis: The Primary Mechanism of Action of Flavopereirine
Flavopereirine and alstonine are structurally related alkaloids of the beta-carboline class. There is evidence that they enter the relatively open strands of the DNA in cancer cells and intercalate between adjacent nucleotides where their presence apparently interferes with the metabolism of DNA (Calvez, Flavopereirine is an intercalating agent for non-supercoiled DNA, Cancer Detection and Prevention 1998; 22(Supplement 1)). In effect, the destabilized DNA of the cancer cell is a target of these alkaloids and the end result is cell death. The toxicity for cancer cells was confirmed in new experiments showing that both the Pao and Rauwolfia extracts inhibit the growth of LNCaP prostate cancer cells in tissue culture (FIG. 1). Moreover, these extracts exhibited significantly higher toxicity for LNCaP cells than for a primary culture of normal prostate cells (Data not shown).
Our recent experiments have also shown that the primary mechanism of action of flavopereirine is the induction of apoptosis whereas alstonine has a relatively minor effect in the induction of this pathway Both the Pao Pereira extract and the Rauwolfia Vomitoria extract triggered apoptosis in the prostate cancer cell line LNCaP as determined by cleavage of PARP and induction of Caspase-3 [FIG. 2], but the effect of the Rauwolfia extract was considerably less than the effect of to Pao extract.
Apoptosis—also called programmed cell death—is a built-in biochemical pathway that triggers a cell to commit suicide. This pathway is normally used during development (e.g. in the development of the nervous system), by the immune system to protect the body from altered cells (e.g. cells infected by a virus), and as a cellular reaction to DNA damage (e.g. if not destroyed these cells can become cancerous). In many cancers, including many prostate cancers, the mechanism for inducing apoptosis is defective so cells that should normally be committing suicide survive and grow to form a tumor. Numerous cancer therapies actually function by inducing apoptosis in certain types of cancer cells.
The induction of apoptosis is a central theme in the prostate cancer research community and the fact that the Pao Pereira and (to a significantly lower degree Rauwolfia Vomitoria) extracts exhibit this effect makes them extremely attractive as potential anti-prostate cancer agents.
2. Potential for Synergistic Action of Flavopereirine and Alstonine Based on Differential Effects on the Apoptotic Pathway, on the Cell Cycle, and on the DNA Damage Response Pathway
Although both extracts induce apoptosis and are toxic for prostate cancer cells, analysis of their action in the cell cycle by fluorescence activated cell sorting revealed different effects. As shown in FIG. 3, the Pao Pereira extract causes accumulation of LNCaP cells in SubG0 whereas Rauwolfia Vomitoria hinder progression of the cells from G1 to S. This result highlights a difference in the mechanism of action of the two extracts whose biochemical basis remains to be determined, though it is presumably based on the difference in the physical structures of flavopereirine and alstonine. One possibility is that they may induce apoptosis by different pathways (e.g. p53-dependent and p53-independent) and another is that they may function with somewhat different kinetics. Regardless of the reason, this difference in activity has therapeutic value: combinations of the two extracts have the potential to act in complementary fashion, that is, they are potentially synergistic in their anti-cancer effects. Combination therapies are often used in cancer treatment and are widely considered to offer significant advantages over the use of a single anti-cancer agent alone.
To further explore the effect of these two extracts on prostate cancer cells a series of microarray assays were performed using arrays containing three different sets of human genes belonging to three different biochemical pathways: apoptosis, cell cycle, and DNA damage. In each case that RNAs for the assays were isolated from LNCaP cells that had been exposed to the extracts for 24 hours. The data obtained from these microarray experiments are referred to collectively as Table I. See Annex. Note that real time PCR was used to spot check the validity of the changes observed in these assays
While the process of analyzing these data and synthesizing coherent descriptions of the effect of the Pao and Rauwolfia extracts on these complex pathways is ongoing and will require additional experiments, several observations can be made highlighting the fact that the two extracts induce different responses in all three microarrays. For example, in the DNA damage response array the Pao extract has a potentially significant effect on the expression of fourteen (14) genes (shown in bold) whereas the Rauwolfia extract has a potentially significant response on thirty (30) transcripts. Closer inspection reveals that both extracts have significant effects on the expression of just four common genes (ATM, DDIT3, ERCC1, and PDCD8). Even more remarkable is that of the four genes affected by both extracts only two are affected in the same way: DDIT3 and ERCC1 are both up-regulated. Analysis of the two other microarrays also reveals divergent results for the Pao Pereira and Rauwolfia Vomitoria extracts strongly substantiating the use of these extracts in combination in order to obtain their complementary effects.
3. Flavopereirine and Alstonine are Active Against Prostate Cancer Tumors in a Xenograft Animal Model
The ability of human tumors to grow as xenografts in athymic mice (e.g., Balb/c, nu/nu) provides a useful in vivo model for studying the biological response to therapies for human cancers. Since the first successful xenotransplantation of human tumors into athymic mice, many different human tumor cell lines (e.g., mammary, lung, genitourinary, gastro-intestinal, head and neck, glioblastoma, bone, and malignant melanomas) have been transplanted and successfully grown in nude mice. The use of this system enabled analysis of the activity of the compounds of the present invention on a prostate cancer xenograft of LNCaP cells in a mammal—a better model for humans than cell-based assays. A number of tests may be used to determine the level of activity, specificity and effect of the compounds and in this case tumor volume and immunohistochemistry were the endpoints.
A graph of the results of the xenograft experiment using the Pao Pereira extract, with measurement of tumor size (cubic millimeters) plotted against time (days), are shown if FIG. 4A. Daily doses of 10 and 20 mg/kg of Pao Pereira extract caused a statistically significant reduction in tumor volume compared to control animals and to animals treated with 50 mg/kg per day. The log transformation shown in FIG. 4B clearly shows that the results fall into two classes. A graph of the results of the xenograft experiment using the Rauwolfia Vomitoria extract is shown in FIG. 7. In this case all three doses of the extract caused statistically significant reduction in tumor volume relative to the controls [p<0.0001)]. Finally, data from two immunohistochemical assays using sections of the tumors removed from the animals confirmed that the mechanism of action of Pao is the induction of apoptosis which is dosage dependent. The results for the TUNEL staining assay are shown in FIG. 5 and the corresponding statistical data are shown in FIG. 6. Consistent results were obtained in the BrdU staining assay [Data not shown]. Similar immunohistochemistry for the Rauwolfia Vomitoria experiment is currently underway.
The dramatic effect of these extracts in reducing tumor volume must also be considered in light of the remarkable fact that the health of the animals in these experiments is not otherwise compromised in any adverse way. For example, the weights of treated and control mice show no significant differences throughout the course of the experiment. The anti-prostate cancer effects of both extracts together with the absence of negative side effects provide a strong scientific basis for the claims described in the present invention.
Formulation and Administration The flavopereirine and alstonine combinations can be formulated as pharmaceutical compositions. The compositions can be included in pharmaceutical kits. Depending on the subject to be treated, the mode of administration, and the type of treatment desired—e.g, prevention, prophylaxis, therapy; the flavopereirine and alstonine combinations are formulated in ways consistent with these parameters. A summary of such techniques is found in Remington's Pharmaceutical Sciences, latest edition, Mack Publishing Co., Easton, Pa.
In general, for use in treatment or prophylaxis, the mixture of flavopereirine and alstonine may be used alone or in combination with other chemotherapeutic agents compounds. The mixture of flavopereirine and alstonine can be administrated singly or in combination with other pharmaceutically active components, and in single or multiple administrations. The mixture formulation may be prepared in a manner suitable for systemic administration. Systemic formulations include those designed for injection, e.g. intramuscular, intravenous or subcutaneous injection, or may be prepared for transdermal, transmucosal, or oral administration. The formulation will generally include a diluent as well as, in some cases, adjuvants, buffers, preservatives and the like. The flavopereirine and alstonine mixture can be administered also in liposomal compositions or as microemulsions using conventional techniques.
If orally administered, the flavopereirine and alstonine combination of the invention can be protected from degradation in the stomach using a suitable enteric coating.
The manner of administration and formulation of the mixture useful in the invention will depend on the nature of the condition, the severity of the condition, the particular subject to be treated, and the judgment of the practitioner, formulation will depend on mode of administration As the mixture of the invention involve small molecules, it is conveniently administered by oral administration by compounding them with suitable pharmaceutical excipients so as to provide tablets, capsules, syrups, and the like. Suitable formulations for oral administration may also include minor components such as buffers, flavoring agents and the like. Typically, the amount of active ingredient in the formulations will be in the range of 1%-99% of the total formulation, but wide variation is permitted depending on the carrier. Suitable carriers include sucrose, pectin, magnesium stearate, lactose, peanut oil, olive oil, water, and the like.
The mixture may also be administered by injection, including intravenous, intramuscular, subcutaneous or intraperitoneal injection. Typical formulations for such use are liquid formulations in isotonic vehicles such as Hank's solution or Ringer's solution.
Suitable alternative formulations also include liposomal formulations, slow-release formulations, and the like.
Any suitable formulation may be used. A compendium of art-known formulations is found in Remington's Pharmaceutical Sciences, latest edition, Mack Publishing Company, Easton, Pa. Reference to this manual is routine in the art.
The dosages of the compounds of the invention will depend on a number of factors which will vary from patient to patient.
Oral dosage forms include capsules and tablets. Capsule or tablets can be easily formulated and can be made easy to swallow. Tablets may contain suitable carriers, binders, lubricants, diluents, disintegrating agents, coloring agents, flavoring agents, flow-inducing agents, or melting agents. A tablet may be made by compression or molding, optionally with one or more additional ingredients. Compressed tables may be prepared by compressing the active ingredient in a free flowing form (e.g., powder, granules) optionally mixed with a binder (e.g., gelatin, hydroxypropylmethylcellulose), lubricant, inert diluent, preservative, disintegrant (e.g., sodium starch glycolate, cross-linked carboxymethyl cellulose) surface-active or dispersing agent. Suitable binders include starch, gelatin, natural sugars such as glucose or beta-lactose, corn sweeteners, natural and synthetic gums such as acacia, tragacanth, or sodium alginate, carboxymethylcellulose, polyethylene glycol, waxes, or the like. Lubricants used in these dosage forms include sodium oleate, sodium stearate, magnesium stearate, sodium benzoate, sodium acetate, sodium chloride, or the like. Disintegrators include, for example, starch, methyl cellulose, agar, bentonite, xanthan gum, or the like. Molded tablets may be made by molding in a suitable machine a mixture of the powdered active ingredient moistened with an inert liquid diluent.
The tablets may optionally be coated or scored and may be formulated so as to provide slow- or controlled-release of the active ingredient. Tablets may also optionally be provided with an enteric coating to provide release in parts of the gut other than the stomach.
As noted above the flavopereirine and alstonine mixture can be included in a kit form. The mixture would be formulated for use as a pharmaceutical. The kits can comprise one or more containers containing the pharmaceutical form of the mixture, which comprises a therapeutically effective amount of the mixture in unit dosage form. Such kits can further include, if desired, one or more of various conventional pharmaceutical kit components, such as, for example, containers with one or more pharmaceutically acceptable carriers, additional containers, etc., as will be readily apparent to those skilled in the art. Instructions, such as printed instructions for example, either as inserts or as labels, the instruction indicating quantities of the components to be administered, guidelines for administration, and/or guidelines for further mixing with additional components, can also be included in the kit.
Tables
Project Pao Pereira Apoptosis 100 ug/ml Pao 24 hr/LNCaP
Catalog # Oligo GEArray ® Human Apoptosis Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 114, 116
Normalization Selected genes: positions 126
Array Name C apoptosis light.tif T apoptosis.tif
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 1.462 1.029 1.422
2 Hs.431048 NM_005157 ABL1 0.130 0.201 0.648
3 Hs.525622 NM_005163 AKT1 0.494 0.607 0.814
4 Hs.552567 NM_001160 APAF1 0.019 −0.003 −6.013
5 Hs.370254 NM_004322 BAD 0.024 0.027 0.896
6 Hs.377484 NM_004323 BAG1 0.040 0.084 0.472
7 Hs.523309 NM_004281 BAG3 0.137 0.117 1.172
8 Hs.194726 NM_004874 BAG4 0.006 −0.011 −0.491
9 Hs.485139 NM_001188 BAK1 0.187 0.269 0.695
10 Hs.159428 NM_004324 BAX 0.026 −0.002 −16.620
11 Hs.549082 NM_003921 BCL10 0.016 −0.001 −27.393
12 Hs.150749 NM_000633 BCL2 0.016 −0.002 −8.129
13 Hs.227817 NM_004049 BCL2A1 0.012 −0.007 −1.853
14 Hs.516966 NM_138578 BCL2L1 0.094 0.139 0.680
15 Hs.283672 NM_020396 BCL2L10 0.013 −0.009 −1.464
16 Hs.469658 NM_006538 BCL2L11 0.010 −0.009 −1.046
17 Hs.289052 NM_052842 BCL2L12 0.124 0.325 0.383
18 Hs.546359 NM_015367 BCL2L13 0.131 0.204 0.642
19 Hs.410026 NM_004050 BCL2L2 0.015 0.001 25.098
20 Hs.486542 NM_014739 BCLAF1 0.021 0.029 0.726
21 Hs.435556 NM_016561 BFAR 0.004 −0.003 −1.284
22 Hs.474150 NM_001196 BID 0.128 0.129 0.993
23 Hs.475055 NM_001197 BIK 0.031 0.006 5.098
24 Hs.519374 NM_004536 BIRC1 0.002 −0.013 −0.174
25 Hs.503704 NM_001166 BIRC2 0.046 0.066 0.698
26 Hs.127799 NM_001165 BIRC3 0.013 −0.012 −1.136
27 Hs.356076 NM_001167 BIRC4 0.006 0.001 6.777
28 Hs.514527 NM_001168 BIRC5 0.610 0.941 0.648
29 Hs.150107 NM_016252 BIRC6 0.008 −0.003 −2.277
30 Hs.256126 NM_022161 BIRC7 0.005 −0.011 −0.441
31 Hs.348263 NM_033341 BIRC8 0.011 −0.012 −0.912
32 Hs.145726 NM_001205 BNIP1 0.039 0.007 5.728
33 Hs.283454 NM_004330 BNIP2 0.016 0.010 1.541
34 Hs.79428 NM_004052 BNIP3 1.091 0.942 1.159
35 Hs.131226 NM_004331 BNIP3L 0.139 0.163 0.853
36 Hs.293753 NM_032515 BOK 0.071 0.067 1.064
37 Hs.490366 NM_004333 BRAF 0.014 0.001 13.023
38 Hs.57973 NM_014550 CARD10 0.022 0.003 7.058
39 Hs.300355 NM_032415 CARD11 0.005 −0.000 −11.164
40 Hs.23248 NM_021209 CARD12 0.004 −0.015 −0.266
41 Hs.550529 NM_024110 CARD14 0.008 −0.007 −1.258
42 Hs.135201 NM_022162 CARD15 0.011 0.007 1.576
43 Hs.405153 NM_006092 CARD4 0.007 −0.008 −0.791
44 Hs.200242 NM_032587 CARD6 0.005 0.003 1.868
45 Hs.446146 NM_014959 CARD8 0.002 −0.001 −2.515
46 Hs.271815 NM_022352 CARD9 0.013 −0.004 −3.092
47 Hs.2490 NM_033292 CASP1 0.012 −0.004 −2.743
48 Hs.5353 NM_001230 CASP10 0.016 −0.006 −2.506
49 Hs.248226 NM_012114 CASP14 0.011 −0.009 −1.273
50 Hs.368982 NM_001224 CASP2 0.123 0.212 0.581
51 Hs.141125 NM_004346 CASP3 0.016 −0.003 −4.959
52 Hs.138378 NM_001225 CASP4 0.137 0.189 0.725
53 Hs.213327 NM_004347 CASP5 0.008 −0.003 −2.563
54 Hs.3280 NM_001226 CASP6 0.020 0.012 1.696
55 Hs.9216 NM_001227 CASP7 0.030 0.027 1.115
56 Hs.369736 NM_001228 CASP8 −0.000 −0.008 0.027
57 Hs.329502 NM_001229 CASP9 0.049 0.068 0.725
58 Hs.390736 NM_003879 CFLAR 0.009 −0.005 −1.687
59 Hs.249129 NM_001279 CIDEA 0.013 0.004 3.523
60 Hs.448590 NM_014430 CIDEB 0.013 0.009 1.446
61 Hs.38533 NM_003805 CRADD 0.115 0.176 0.652
62 Hs.380277 NM_004938 DAPK1 0.006 0.001 6.290
63 Hs.237886 NM_014326 DAPK2 0.021 0.004 5.061
64 Hs.484782 NM_004401 DFFA 0.040 0.025 1.578
65 Hs.133089 NM_004402 DFFB 0.040 0.082 0.490
66 Hs.86131 NM_003824 FADD 0.167 0.241 0.690
67 Hs.80409 NM_001924 GADD45A 0.177 0.129 1.377
68 Hs.248114 NM_000514 GDNF 0.003 0.007 0.431
69 Hs.87247 NM_003806 HRK 0.005 −0.004 −1.276
70 Hs.20573 NM_000875 IGF1R −0.002 0.003 −0.701
71 Hs.36 NM_000595 LTA 0.005 0.004 1.105
72 Hs.1116 NM_002342 LTBR 0.786 0.751 1.046
73 Hs.532826 NM_021960 MCL1 0.459 0.605 0.758
74 Hs.513667 NM_003946 NOL3 0.246 0.317 0.776
75 Hs.499094 NM_013258 PYCARD 0.011 0.005 2.128
76 Hs.519842 NM_003804 RIPK1 0.005 0.002 2.240
77 Hs.103755 NM_003821 RIPK2 0.072 0.149 0.485
78 Hs.241570 NM_000594 TNF 0.004 0.004 0.807
79 Hs.401745 NM_003844 TNFRSF10A 0.031 0.023 1.376
80 Hs.521456 NM_003842 TNFRSF10B 0.985 0.921 1.070
81 Hs.119684 NM_003841 TNFRSF10C 0.016 0.008 1.991
82 Hs.213467 NM_003840 TNFRSF10D 0.006 0.007 0.927
83 Hs.81791 NM_002546 TNFRSF11B 0.024 −0.000 −67.929
84 Hs.355899 NM_016639 TNFRSF12A 0.020 0.029 0.692
85 Hs.512898 NM_003820 TNFRSF14 0.009 −0.002 −4.653
86 Hs.149168 NM_018647 TNFRSF19 0.003 −0.005 −0.515
87 Hs.279594 NM_001065 TNFRSF1A 0.107 0.180 0.595
88 Hs.256278 NM_001066 TNFRSF1B 0.006 −0.001 −4.329
89 Hs.443577 NM_014452 TNFRSF21 0.012 −0.007 −1.676
90 Hs.462529 NM_003790 TNFRSF25 0.032 0.034 0.950
91 Hs.472860 NM_001250 CD40 0.002 −0.007 −0.228
92 Hs.244139 NM_152877 FAS 0.006 −0.009 −0.673
93 Hs.434878 NM_003823 TNFRSF6B 0.050 0.082 0.613
94 Hs.355307 NM_001242 TNFRSF7 0.006 −0.003 −2.164
95 Hs.193418 NM_001561 TNFRSF9 0.005 0.001 7.460
96 Hs.478275 NM_003810 TNFSF10 0.005 −0.002 −2.889
97 Hs.129708 NM_003807 TNFSF14 −0.001 0.001 −1.310
98 Hs.248197 NM_005092 TNFSF18 0.006 −0.002 −2.723
99 Hs.652 NM_000074 CD40LG 0.003 −0.005 −0.555
100 Hs.2007 NM_000639 FASLG 0.002 −0.005 −0.368
101 Hs.501497 NM_001252 TNFSF7 0.003 0.004 0.754
102 Hs.494901 NM_001244 TNFSF8 0.006 −0.007 −0.823
103 Hs.1524 NM_003811 TNFSF9 0.003 −0.004 −0.658
104 Hs.408312 NM_000546 TP53 0.009 0.026 0.368
105 Hs.523968 NM_005426 TP53BP2 0.007 0.006 1.239
106 Hs.192132 NM_005427 TP73 0.000 −0.006 −0.073
107 Hs.137569 NM_003722 TP73L 0.004 −0.005 −0.808
108 Hs.460996 NM_003789 TRADD 0.205 0.246 0.835
109 Hs.531251 NM_005658 TRAF1 0.002 −0.000 −5.206
110 Hs.522506 NM_021138 TRAF2 0.001 0.016 0.078
111 Hs.510528 NM_003300 TRAF3 0.026 0.029 0.894
112 Hs.8375 NM_004295 TRAF4 0.434 0.614 0.707
113 Hs.523930 NM_004619 TRAF5 −0.002 −0.005 0.356
114 Blank 0.001 −0.002 −0.346
115 N/A L08752 PUC18 0.000 −0.002 −0.209
116 Blank 0.001 0.001 1.087
117 Blank −0.002 0.001 −3.216
118 N/A N/A AS1R2 0.000 −0.007 −0.016
119 N/A N/A AS1R1 0.004 0.002 1.532
120 N/A N/A AS1 0.013 −0.005 −2.927
121 Hs.544577 NM_002046 GAPD 0.878 1.014 0.866
122 Hs.534255 NM_004048 B2M 0.642 0.645 0.994
123 Hs.509736 NM_007355 HSPCB 0.975 1.006 0.969
124 Hs.509736 NM_007355 HSPCB 0.934 1.039 0.899
125 Hs.520640 NM_001101 ACTB 1.008 1.030 0.979
126 Hs.520640 NM_001101 ACTB 1.000 1.000 1.000
127 N/A N/A BAS2C 0.055 0.106 0.517
128 N/A N/A BAS2C 0.751 0.922 0.815
* As default, Group 1 is used as control group.
Project Rauwolfia Apoptosis 500 ug/ml 24 hr LNCaP
Catalog # Oligo GEArray ® Human Apoptosis Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 114, 116
Normalization Selected genes: positions 1, 121, 123, 124, 125, 126
Array Name Rauwolfia Apoptosis Rauwolfia Apoptosis Rx.tif
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 0.4721 0.4813 0.9809
2 Hs.431048 NM_005157 ABL1 −0.1908 −0.0298 6.4113
3 Hs.525622 NM_005163 AKT1 −0.0315 0.1583 −0.1989
4 Hs.552567 NM_001160 APAF1 0.3442 −0.0376 −9.1443
5 Hs.370254 NM_004322 BAD 0.0596 0.0600 0.9930
6 Hs.377484 NM_004323 BAG1 −0.0272 0.1709 −0.1590
7 Hs.523309 NM_004281 BAG3 0.0421 0.1204 0.3493
8 Hs.194726 NM_004874 BAG4 −0.1620 0.1170 −1.3841
9 Hs.485139 NM_001188 BAK1 −0.0838 0.0916 −0.9154
10 Hs.159428 NM_004324 BAX −0.2322 0.0343 −6.7676
11 Hs.549082 NM_003921 BCL10 −0.1444 0.0383 −3.7758
12 Hs.150749 NM_000633 BCL2 −0.0527 0.0706 −0.7466
13 Hs.227817 NM_004049 BCL2A1 −0.0477 0.0874 −0.5461
14 Hs.516966 NM_138578 BCL2L1 −0.0831 0.1577 −0.5271
15 Hs.283672 NM_020396 BCL2L10 −0.0871 0.1131 −0.7704
16 Hs.469658 NM_006538 BCL2L11 −0.1348 0.1165 −1.1572
17 Hs.289052 NM_052842 BCL2L12 −0.0735 −0.0072 10.2457
18 Hs.546359 NM_015367 BCL2L13 −0.1448 0.0797 −1.8154
19 Hs.410026 NM_004050 BCL2L2 −0.1769 −0.0185 9.5777
20 Hs.486542 NM_014739 BCLAF1 0.0460 0.0272 1.6914
21 Hs.435556 NM_016561 BFAR −0.0530 0.0711 −0.7457
22 Hs.474150 NM_001196 BID −0.0215 0.1373 −0.1569
23 Hs.475055 NM_001197 BIK −0.1544 0.1039 −1.4857
24 Hs.519374 NM_004536 BIRC1 −0.1686 0.0748 −2.2556
25 Hs.503704 NM_001166 BIRC2 −0.0490 0.0285 −1.7181
26 Hs.127799 NM_001165 BIRC3 −0.1521 0.0251 −6.0525
27 Hs.356076 NM_001167 BIRC4 −0.1325 0.0703 −1.8852
28 Hs.514527 NM_001168 BIRC5 −0.0861 0.1853 −0.4648
29 Hs.150107 NM_016252 BIRC6 −0.1136 0.0687 −1.6536
30 Hs.256126 NM_022161 BIRC7 −0.1444 0.1063 −1.3592
31 Hs.348263 NM_033341 BIRC8 −0.1464 0.0876 −1.6711
32 Hs.145726 NM_001205 BNIP1 −0.1315 0.0661 −1.9900
33 Hs.283454 NM_004330 BNIP2 −0.0136 0.0356 −0.3812
34 Hs.79428 NM_004052 BNIP3 0.1415 0.2796 0.5059
35 Hs.131226 NM_004331 BNIP3L 0.0013 0.0934 0.0142
36 Hs.293753 NM_032515 BOK 0.0394 0.0417 0.9461
37 Hs.490366 NM_004333 BRAF −0.0590 0.0616 −0.9569
38 Hs.57973 NM_014550 CARD10 −0.0769 0.0960 −0.8004
39 Hs.300355 NM_032415 CARD11 −0.0676 0.0818 −0.8257
40 Hs.23248 NM_021209 CARD12 −0.0497 0.0446 −1.1153
41 Hs.550529 NM_024110 CARD14 0.0066 −0.0080 −0.8317
42 Hs.135201 NM_022162 CARD15 0.0133 0.0246 0.5387
43 Hs.405153 NM_006092 CARD4 0.0616 0.0028 21.9971
44 Hs.200242 NM_032587 CARD6 0.2282 −0.0227 −10.0675
45 Hs.446146 NM_014959 CARD8 0.1491 −0.0048 −30.9637
46 Hs.271815 NM_022352 CARD9 0.0212 0.0183 1.1589
47 Hs.2490 NM_033292 CASP1 0.0374 0.1018 0.3677
48 Hs.5353 NM_001230 CASP10 0.0046 0.1286 0.0361
49 Hs.248226 NM_012114 CASP14 0.0361 0.0033 10.8554
50 Hs.368982 NM_001224 CASP2 0.1027 0.0795 1.2920
51 Hs.141125 NM_004346 CASP3 0.1252 −0.0479 −2.6152
52 Hs.138378 NM_001225 CASP4 0.0924 −0.0382 −2.4217
53 Hs.213327 NM_004347 CASP5 0.0398 −0.0941 −0.4225
54 Hs.3280 NM_001226 CASP6 −0.0096 −0.0607 0.1581
55 Hs.9216 NM_001227 CASP7 0.0248 0.0128 1.9441
56 Hs.369736 NM_001228 CASP8 0.0490 0.0608 0.8059
57 Hs.329502 NM_001229 CASP9 0.2067 0.0130 15.8490
58 Hs.390736 NM_003879 CFLAR 0.1444 0.0028 51.5632
59 Hs.249129 NM_001279 CIDEA 0.0633 −0.0014 −45.1769
60 Hs.448590 NM_014430 CIDEB 0.1517 −0.0411 −3.6957
61 Hs.38533 NM_003805 CRADD 0.0583 −0.0594 −0.9809
62 Hs.380277 NM_004938 DAPK1 0.0189 −0.0321 −0.5878
63 Hs.237886 NM_014326 DAPK2 0.0388 0.0217 1.7854
64 Hs.484782 NM_004401 DFFA 0.0961 0.0776 1.2373
65 Hs.133089 NM_004402 DFFB 0.1020 −0.0014 −72.8507
66 Hs.86131 NM_003824 FADD 0.2524 −0.0384 −6.5689
67 Hs.80409 NM_001924 GADD45A 0.1941 −0.0453 −4.2895
68 Hs.248114 NM_000514 GDNF 0.1362 −0.0652 −2.0878
69 Hs.87247 NM_003806 HRK −0.0560 −0.0825 0.6782
70 Hs.20573 NM_000875 IGF1R 0.0086 −0.0573 −0.1502
71 Hs.36 NM_000595 LTA −0.0205 −0.0166 1.2349
72 Hs.1116 NM_002342 LTBR 0.0699 0.0950 0.7360
73 Hs.532826 NM_021960 MCL1 0.1424 −0.0064 −22.2920
74 Hs.513667 NM_003946 NOL3 0.1030 −0.0206 −5.0084
75 Hs.499094 NM_013258 PYCARD 0.0729 −0.0544 −1.3386
76 Hs.519842 NM_003804 RIPK1 0.0099 −0.0713 −0.1395
77 Hs.103755 NM_003821 RIPK2 0.1348 0.0201 6.6968
78 Hs.241570 NM_000594 TNF −0.0682 −0.0844 0.8087
79 Hs.401745 NM_003844 TNFRSF10A −0.0142 −0.0403 0.3538
80 Hs.521456 NM_003842 TNFRSF10B 0.2047 0.0582 3.5170
81 Hs.119684 NM_003841 TNFRSF10C 0.1375 0.0130 10.5406
82 Hs.213467 NM_003840 TNFRSF10D −0.0239 −0.0592 0.4031
83 Hs.81791 NM_002546 TNFRSF11B 0.0331 0.0049 6.7580
84 Hs.355899 NM_016639 TNFRSF12A −0.0023 −0.0119 0.1948
85 Hs.512898 NM_003820 TNFRSF14 −0.0212 −0.0345 0.6147
86 Hs.149168 NM_018647 TNFRSF19 −0.0232 −0.0870 0.2665
87 Hs.279594 NM_001065 TNFRSF1A 0.0199 0.0256 0.7750
88 Hs.256278 NM_001066 TNFRSF1B −0.0444 0.0002 −253.5583
89 Hs.443577 NM_014452 TNFRSF21 0.0851 −0.0418 −2.0347
90 Hs.462529 NM_003790 TNFRSF25 0.0437 −0.0689 −0.6347
91 Hs.472860 NM_001250 CD40 0.0179 −0.0883 −0.2025
92 Hs.244139 NM_152877 FAS −0.0106 −0.0886 0.1197
93 Hs.434878 NM_003823 TNFRSF6B −0.0480 −0.0846 0.5675
94 Hs.355307 NM_001242 TNFRSF7 −0.0411 −0.1004 0.4091
95 Hs.193418 NM_001561 TNFRSF9 −0.1070 −0.0552 1.9372
96 Hs.478275 NM_003810 TNFSF10 −0.0755 −0.0221 3.4105
97 Hs.129708 NM_003807 TNFSF14 0.0358 −0.0613 −0.5839
98 Hs.248197 NM_005092 TNFSF18 0.0354 −0.0707 −0.5012
99 Hs.652 NM_000074 CD40LG 0.0457 −0.0321 −1.4230
100 Hs.2007 NM_000639 FASLG 0.1474 0.1443 1.0213
101 Hs.501497 NM_001252 TNFSF7 −0.0212 −0.0605 0.3505
102 Hs.494901 NM_001244 TNFSF8 −0.0338 0.0900 −0.3755
103 Hs.1524 NM_003811 TNFSF9 −0.0517 0.0380 −1.3603
104 Hs.408312 NM_000546 TP53 0.0083 0.1110 0.0746
105 Hs.523968 NM_005426 TP53BP2 0.1159 0.0225 5.1539
106 Hs.192132 NM_005427 TP73 0.0520 −0.0295 −1.7631
107 Hs.137569 NM_003722 TP73L 0.0855 0.0485 1.7624
108 Hs.460996 NM_003789 TRADD 0.0480 0.1010 0.4755
109 Hs.531251 NM_005658 TRAF1 −0.0133 −0.0710 0.1867
110 Hs.522506 NM_021138 TRAF2 −0.0288 −0.0355 0.8110
111 Hs.510528 NM_003300 TRAF3 −0.1259 −0.0363 3.4653
112 Hs.8375 NM_004295 TRAF4 0.0149 0.0771 0.1933
113 Hs.523930 NM_004619 TRAF5 0.0172 −0.0298 −0.5788
114 Blank 0.0500 −0.0547 −0.9143
115 N/A L08752 PUC18 −0.0126 −0.0463 0.2719
116 Blank −0.0636 −0.0064 9.9536
117 Blank 0.0136 0.0611 0.2223
118 N/A N/A AS1R2 −0.0129 0.1307 −0.0989
119 N/A N/A AS1R1 0.2653 0.1974 1.3443
120 N/A N/A AS1 0.9584 0.8912 1.0754
121 Hs.544577 NM_002046 GAPD 0.7006 1.0997 0.6371
122 Hs.534255 NM_004048 B2M 0.2839 0.1086 2.6134
123 Hs.509736 NM_007355 HSPCB 0.9918 0.8395 1.1815
124 Hs.509736 NM_007355 HSPCB 0.8686 0.8668 1.0021
125 Hs.520640 NM_001101 ACTB 1.5778 1.2042 1.3103
126 Hs.520640 NM_001101 ACTB 1.3890 1.5086 0.9208
127 N/A N/A BAS2C 2.1066 1.7055 1.2351
128 N/A N/A BAS2C 2.0996 1.6617 1.2635
* As default, Group 1 is used as control group.
Project Pao Cell Cycle 100 ug/ml 24 hr LNCaP
Catalog # Oligo GEArray ® Human Cell Cycle Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 114, 116
Normalization Selected genes: positions 125
Array Name T cell cycle light.tif T cell cycle light.tif
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 0.992 0.956 1.039
2 Hs.431048 NM_005157 ABL1 0.048 0.078 0.622
3 Hs.533262 NM_013366 ANAPC2 0.010 0.009 1.056
4 Hs.152173 NM_013367 ANAPC4 0.049 0.106 0.467
5 Hs.7101 NM_016237 ANAPC5 0.118 0.281 0.422
6 Hs.194695 NM_004675 ARHI 0.002 −0.000 −6.380
7 Hs.435561 NM_000051 ATM 0.029 0.042 0.682
8 Hs.271791 NM_001184 ATR 0.015 0.031 0.493
9 Hs.159428 NM_004324 BAX 0.007 0.004 1.659
10 Hs.370292 NM_016567 BCCIP 0.012 0.020 0.605
11 Hs.150749 NM_000633 BCL2 0.004 0.001 6.347
12 Hs.514527 NM_001168 BIRC5 0.224 0.806 0.278
13 Hs.194143 NM_007294 BRCA1 0.006 0.030 0.182
14 Hs.34012 NM_000059 BRCA2 0.003 0.000 35.636
15 Hs.417050 NM_003914 CCNA1 0.002 0.002 1.177
16 Hs.85137 NM_001237 CCNA2 0.007 0.014 0.476
17 Hs.23960 NM_031966 CCNB1 0.048 0.128 0.371
18 Hs.194698 NM_004701 CCNB2 0.008 0.004 1.945
19 Hs.430646 NM_005190 CCNC 0.013 0.004 3.493
20 Hs.523852 NM_053056 CCND1 0.007 0.000 16.573
21 Hs.376071 NM_001759 CCND2 0.000 −0.000 −2.759
22 Hs.534307 NM_001760 CCND3 0.337 0.805 0.419
23 Hs.244723 NM_001238 CCNE1 0.042 0.080 0.525
24 Hs.408658 NM_004702 CCNE2 0.007 0.009 0.774
25 Hs.1973 NM_001761 CCNF 0.002 0.001 3.677
26 Hs.79101 NM_004060 CCNG1 0.014 0.013 1.033
27 Hs.13291 NM_004354 CCNG2 0.057 0.098 0.579
28 Hs.146607 NM_001239 CCNH 0.244 0.691 0.353
29 Hs.279906 NM_001240 CCNT1 0.004 −0.000 −14.118
30 Hs.292754 NM_001241 CCNT2 0.015 0.013 1.161
31 Hs.374127 NM_003903 CDC16 0.083 0.140 0.594
32 Hs.334562 NM_001786 CDC2 0.006 0.004 1.365
33 Hs.524947 NM_001255 CDC20 0.062 0.362 0.171
34 Hs.1634 NM_001789 CDC25A 0.001 −0.003 −0.307
35 Hs.656 NM_001790 CDC25C 0.008 0.021 0.366
36 Hs.514997 NM_004359 CDC34 0.031 0.060 0.516
37 Hs.160958 NM_007065 CDC37 0.020 0.015 1.333
38 Hs.474217 NM_003504 CDC45L 0.003 0.000 37.346
39 Hs.405958 NM_001254 CDC6 0.007 0.009 0.793
40 Hs.533573 NM_003503 CDC7 0.001 0.002 0.569
41 Hs.19192 NM_001798 CDK2 0.045 0.137 0.330
42 Hs.95577 NM_000075 CDK4 0.770 0.957 0.805
43 Hs.500015 NM_003885 CDK5R1 0.004 −0.002 −2.473
44 Hs.158460 NM_003936 CDK5R2 0.002 −0.000 −4.346
45 Hs.435952 NM_016408 CDK5RAP1 0.006 0.010 0.576
46 Hs.20157 NM_176096 CDK5RAP3 0.001 0.000 7.638
47 Hs.119882 NM_001259 CDK6 0.003 0.001 5.750
48 Hs.184298 NM_001799 CDK7 0.037 0.036 1.036
49 Hs.382306 NM_001260 CDK8 0.022 0.003 8.117
50 Hs.370771 NM_000389 CDKN1A 0.912 0.865 1.054
51 Hs.238990 NM_004064 CDKN1B 0.041 0.043 0.956
52 Hs.106070 NM_000076 CDKN1C 0.001 −0.002 −0.481
53 Hs.421349 NM_058195 CDKN2A 0.012 0.026 0.452
54 Hs.72901 NM_004936 CDKN2B 0.006 0.005 1.094
55 Hs.525324 NM_078626 CDKN2C 0.021 0.068 0.312
56 Hs.435051 NM_001800 CDKN2D 0.019 0.045 0.424
57 Hs.84113 NM_005192 CDKN3 0.025 0.018 1.406
58 Hs.24529 NM_001274 CHEK1 0.007 0.002 3.101
59 Hs.291363 NM_007194 CHEK2 0.002 0.003 0.593
60 Hs.374378 NM_001826 CKS1B 0.045 0.123 0.369
61 Hs.83758 NM_001827 CKS2 0.330 0.679 0.486
62 Hs.146806 NM_003592 CUL1 0.399 0.538 0.743
63 Hs.82919 NM_003591 CUL2 0.010 0.015 0.662
64 Hs.372286 NM_003590 CUL3 0.008 0.000 20.679
65 Hs.339735 NM_003589 CUL4A 0.043 0.022 1.923
66 Hs.440320 NM_003478 CUL5 0.016 0.002 9.800
67 Hs.443960 NM_004399 DDX11 0.008 0.015 0.525
68 Hs.211463 NM_004945 DNM2 0.003 0.002 1.762
69 Hs.96055 NM_005225 E2F1 0.100 0.278 0.359
70 Hs.194333 NM_004091 E2F2 0.015 0.045 0.322
71 Hs.269408 NM_001949 E2F3 0.004 0.001 5.082
72 Hs.108371 NM_001950 E2F4 0.008 0.004 2.180
73 Hs.445758 NM_001951 E2F5 0.008 0.000 98.497
74 Hs.135465 NM_001952 E2F6 0.001 −0.001 −0.743
75 Hs.80409 NM_001924 GADD45A 0.075 0.032 2.310
76 Hs.523510 NM_005316 GTF2H1 0.024 0.013 1.858
77 Hs.386189 NM_016426 GTSE1 0.006 0.007 0.828
78 Hs.26663 NM_016323 HERC5 0.001 −0.001 −1.466
79 Hs.152983 NM_004507 HUS1 0.004 −0.000 −28.200
80 Hs.300559 NM_014708 KNTC1 0.005 0.004 1.207
81 Hs.252712 NM_002266 KPNA2 0.180 0.346 0.520
82 Hs.533185 NM_002358 MAD2L1 0.026 0.035 0.737
83 Hs.19400 NM_006341 MAD2L2 0.118 0.154 0.767
84 Hs.477481 NM_004526 MCM2 0.377 0.563 0.669
85 Hs.179565 NM_002388 MCM3 0.007 0.007 1.025
86 Hs.460184 NM_005914 MCM4 0.003 0.002 2.108
87 Hs.517582 NM_006739 MCM5 0.009 0.016 0.600
88 Hs.444118 NM_005915 MCM6 0.010 0.008 1.202
89 Hs.438720 NM_005916 MCM7 0.142 0.345 0.411
90 Hs.80976 NM_002417 MKI67 0.006 0.032 0.194
91 Hs.509523 NM_002431 MNAT1 0.003 0.002 1.406
92 Hs.20555 NM_005590 MRE11A 0.001 0.004 0.350
93 Hs.492208 NM_002485 NBS1 0.003 0.002 1.834
94 Hs.147433 NM_182649 PCNA 0.514 0.744 0.691
95 Hs.77783 NM_182687 PKMYT1 0.029 0.144 0.201
96 Hs.531879 NM_002853 RAD1 0.017 0.011 1.554
97 Hs.16184 NM_002873 RAD17 0.006 0.001 9.384
98 Hs.242635 NM_005732 RAD50 0.005 0.001 4.031
99 Hs.446554 NM_002875 RAD51 0.003 −0.001 −2.643
100 Hs.240457 NM_004584 RAD9A 0.010 0.020 0.489
101 Hs.408528 NM_000321 RB1 0.032 0.010 3.188
102 Hs.546282 NM_002894 RBBP8 0.010 0.011 0.890
103 Hs.207745 NM_002895 RBL1 0.008 0.005 1.414
104 Hs.513609 NM_005611 RBL2 0.023 0.018 1.307
105 Hs.507866 NM_014059 RGC32 0.005 −0.003 −1.854
106 Hs.487540 NM_002947 RPA3 0.002 0.000 28.121
107 Hs.269898 NM_013376 SERTAD1 0.009 0.006 1.665
108 Hs.23348 NM_005983 SKP2 −0.000 −0.001 0.039
109 Hs.81424 NM_003352 SUMO1 0.027 0.027 1.012
110 Hs.79353 NM_007111 TFDP1 0.035 0.038 0.901
111 Hs.379018 NM_006286 TFDP2 0.008 0.006 1.346
112 Hs.408312 NM_000546 TP53 0.016 0.018 0.914
113 Hs.406693 NM_003334 UBE1 0.061 0.044 1.381
114 Blank −0.000 0.001 −0.240
115 N/A L08752 PUC18 −0.001 −0.001 0.911
116 Blank −0.000 −0.001 0.190
117 Blank 0.000 0.001 0.555
118 N/A N/A AS1R2 0.006 0.002 3.958
119 N/A N/A AS1R1 −0.000 0.004 −0.110
120 N/A N/A AS1 0.003 0.004 0.627
121 Hs.544577 NM_002046 GAPD 0.911 0.990 0.920
122 Hs.534255 NM_004048 B2M 0.333 0.487 0.684
123 Hs.509736 NM_007355 HSPCB 0.981 0.917 1.070
124 Hs.509736 NM_007355 HSPCB 0.987 0.964 1.024
125 Hs.520640 NM_001101 ACTB 1.000 1.000 1.000
126 Hs.520640 NM_001101 ACTB 0.980 0.967 1.013
127 N/A N/A BAS2C 0.032 0.093 0.347
128 N/A N/A BAS2C 0.669 0.841 0.795
* As default, Group 1 is used as control group.
Project Rauwolfia Cell Cycle 500 ug/ml 24 hr LNCaP
Catalog # Oligo GEArray ® Human Cell Cycle Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 114, 116
Normalization Selected genes: positions 1, 121, 122, 123, 124,
125, 126
Array Name Rauwolfia Rx Cell Cycle.tif
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 0.9708 0.7410 1.3102
2 Hs.431048 NM_005157 ABL1 0.0617 0.0930 0.6641
3 Hs.533262 NM_013366 ANAPC2 0.3128 0.3405 0.9186
4 Hs.152173 NM_013367 ANAPC4 0.0785 0.0452 1.7375
5 Hs.7101 NM_016237 ANAPC5 0.0074 −0.0339 −0.2169
6 Hs.194695 NM_004675 ARHI 0.0092 −0.0952 −0.0969
7 Hs.435561 NM_000051 ATM 0.5787 0.5695 1.0162
8 Hs.271791 NM_001184 ATR 0.1767 −0.0030 −57.9743
9 Hs.159428 NM_004324 BAX 0.0493 0.0381 1.2941
10 Hs.370292 NM_016567 BCCIP 0.1229 0.0324 3.7965
11 Hs.150749 NM_000633 BCL2 0.1167 0.0552 2.1130
12 Hs.514527 NM_001168 BIRC5 0.0996 0.1983 0.5024
13 Hs.194143 NM_007294 BRCA1 0.1245 0.1423 0.8747
14 Hs.34012 NM_000059 BRCA2 0.0328 −0.0721 −0.4555
15 Hs.417050 NM_003914 CCNA1 0.2733 −0.0522 −5.2368
16 Hs.85137 NM_001237 CCNA2 0.2059 −0.0202 −10.1973
17 Hs.23960 NM_031966 CCNB1 0.0664 0.0520 1.2757
18 Hs.194698 NM_004701 CCNB2 0.1124 0.0495 2.2690
19 Hs.430646 NM_005190 CCNC 0.0888 0.0834 1.0648
20 Hs.523852 NM_053056 CCND1 0.0136 0.6031 0.0225
21 Hs.376071 NM_001759 CCND2 0.0042 −0.0152 −0.2801
22 Hs.534307 NM_001760 CCND3 0.1037 0.1890 0.5487
23 Hs.244723 NM_001238 CCNE1 0.1121 −0.0053 −21.0110
24 Hs.408658 NM_004702 CCNE2 0.0241 −0.0277 −0.8701
25 Hs.1973 NM_001761 CCNF 0.0869 0.0509 1.7073
26 Hs.79101 NM_004060 CCNG1 0.1559 0.1108 1.4070
27 Hs.13291 NM_004354 CCNG2 0.0962 0.1149 0.8374
28 Hs.146607 NM_001239 CCNH 0.0272 0.1042 0.2615
29 Hs.279906 NM_001240 CCNT1 −0.0501 −0.0081 6.2066
30 Hs.292754 NM_001241 CCNT2 0.0285 −0.0394 −0.7230
31 Hs.374127 NM_003903 CDC16 0.1177 −0.0072 −16.4273
32 Hs.334562 NM_001786 CDC2 −0.0191 −0.0428 0.4450
33 Hs.524947 NM_001255 CDC20 0.1136 0.0948 1.1987
34 Hs.1634 NM_001789 CDC25A 0.0962 0.1126 0.8544
35 Hs.656 NM_001790 CDC25C 0.0686 0.0795 0.8628
36 Hs.514997 NM_004359 CDC34 0.0282 −0.0332 −0.8480
37 Hs.160958 NM_007065 CDC37 −0.0100 −0.0202 0.4976
38 Hs.474217 NM_003504 CDC45L −0.0501 −0.1244 0.4029
39 Hs.405958 NM_001254 CDC6 0.0204 −0.1619 −0.1260
40 Hs.533573 NM_003503 CDC7 −0.0085 0.0013 −6.5566
41 Hs.19192 NM_001798 CDK2 0.2109 0.2500 0.8435
42 Hs.95577 NM_000075 CDK4 0.4482 0.7110 0.6304
43 Hs.500015 NM_003885 CDK5R1 0.1462 0.1259 1.1618
44 Hs.158460 NM_003936 CDK5R2 0.0869 0.0280 3.0991
45 Hs.435952 NM_016408 CDK5RAP1 0.0738 −0.0846 −0.8724
46 Hs.20157 NM_176096 CDK5RAP3 0.0742 0.0242 3.0702
47 Hs.119882 NM_001259 CDK6 −0.0271 0.0811 −0.3347
48 Hs.184298 NM_001799 CDK7 0.0055 0.0248 0.2210
49 Hs.382306 NM_001260 CDK8 0.1003 0.1291 0.7767
50 Hs.370771 NM_000389 CDKN1A 2.1099 0.4946 4.2662
51 Hs.238990 NM_004064 CDKN1B 0.1525 0.1284 1.1875
52 Hs.106070 NM_000076 CDKN1C 0.0493 0.0280 1.7582
53 Hs.421349 NM_058195 CDKN2A 0.0307 0.0098 3.1434
54 Hs.72901 NM_004936 CDKN2B 0.0515 0.0575 0.8948
55 Hs.525324 NM_078626 CDKN2C 0.1229 0.0891 1.3802
56 Hs.435051 NM_001800 CDKN2D 0.0639 0.0626 1.0215
57 Hs.84113 NM_005192 CDKN3 0.0667 0.0790 0.8442
58 Hs.24529 NM_001274 CHEK1 0.0863 0.1007 0.8565
59 Hs.291363 NM_007194 CHEK2 0.1260 0.0820 1.5374
60 Hs.374378 NM_001826 CKS1B 0.0978 0.0578 1.6929
61 Hs.83758 NM_001827 CKS2 0.1111 0.1339 0.8301
62 Hs.146806 NM_003592 CUL1 0.1422 0.1199 1.1857
63 Hs.82919 NM_003591 CUL2 0.1726 0.0644 2.6816
64 Hs.372286 NM_003590 CUL3 0.1447 0.0637 2.2715
65 Hs.339735 NM_003589 CUL4A 0.1267 0.1076 1.1774
66 Hs.440320 NM_003478 CUL5 0.4051 0.4319 0.9378
67 Hs.443960 NM_004399 DDX11 0.1369 0.1250 1.0957
68 Hs.211463 NM_004945 DNM2 0.1456 0.0084 17.3744
69 Hs.96055 NM_005225 E2F1 0.1357 0.3227 0.4205
70 Hs.194333 NM_004091 E2F2 0.0244 0.0223 1.0949
71 Hs.269408 NM_001949 E2F3 0.1363 0.0443 3.0789
72 Hs.108371 NM_001950 E2F4 0.1388 0.0482 2.8821
73 Hs.445758 NM_001951 E2F5 −0.0265 0.0454 −0.5839
74 Hs.135465 NM_001952 E2F6 0.0316 0.0079 3.9864
75 Hs.80409 NM_001924 GADD45A 0.1465 0.0475 3.0873
76 Hs.523510 NM_005316 GTF2H1 0.0515 0.0123 4.1961
77 Hs.386189 NM_016426 GTSE1 0.0878 0.0397 2.2125
78 Hs.26663 NM_016323 HERC5 0.0207 0.0461 0.4494
79 Hs.152983 NM_004507 HUS1 0.0947 0.0226 4.1973
80 Hs.300559 NM_014708 KNTC1 0.0748 0.0148 5.0589
81 Hs.252712 NM_002266 KPNA2 0.0014 0.1711 0.0085
82 Hs.533185 NM_002358 MAD2L1 0.0608 0.0898 0.6773
83 Hs.19400 NM_006341 MAD2L2 0.0154 0.1848 0.0835
84 Hs.477481 NM_004526 MCM2 0.0791 0.1746 0.4533
85 Hs.179565 NM_002388 MCM3 0.0018 −0.0213 −0.0825
86 Hs.460184 NM_005914 MCM4 0.0201 −0.0149 −1.3454
87 Hs.517582 NM_006739 MCM5 0.1204 0.0107 11.2919
88 Hs.444118 NM_005915 MCM6 0.0735 0.0216 3.3983
89 Hs.438720 NM_005916 MCM7 0.0617 0.0989 0.6241
90 Hs.80976 NM_002417 MKI67 0.1220 0.0134 9.0981
91 Hs.509523 NM_002431 MNAT1 0.0192 0.0200 0.9562
92 Hs.20555 NM_005590 MRE11A 0.0372 −0.0350 −1.0608
93 Hs.492208 NM_002485 NBS1 0.0732 −0.0394 −1.8589
94 Hs.147433 NM_182649 PCNA 0.1419 0.0591 2.3998
95 Hs.77783 NM_182687 PKMYT1 0.1034 0.0472 2.1880
96 Hs.531879 NM_002853 RAD1 0.1034 0.0308 3.3579
97 Hs.16184 NM_002873 RAD17 0.0331 0.0141 2.3512
98 Hs.242635 NM_005732 RAD50 0.0540 −0.0636 −0.8481
99 Hs.446554 NM_002875 RAD51 0.0058 −0.0325 −0.1783
100 Hs.240457 NM_004584 RAD9A −0.0085 −0.0188 0.4513
101 Hs.408528 NM_000321 RB1 0.3510 0.2383 1.4727
102 Hs.546282 NM_002894 RBBP8 0.1354 0.0173 7.8265
103 Hs.207745 NM_002895 RBL1 0.0639 0.0749 0.8532
104 Hs.513609 NM_005611 RBL2 0.1556 0.0706 2.2048
105 Hs.507866 NM_014059 RGC32 −0.0243 0.0751 −0.3240
106 Hs.487540 NM_002947 RPA3 0.0275 −0.0382 −0.7203
107 Hs.269898 NM_013376 SERTAD1 0.0272 −0.0819 −0.3326
108 Hs.23348 NM_005983 SKP2 0.0533 −0.1075 −0.4961
109 Hs.81424 NM_003352 SUMO1 0.1121 0.0468 2.3954
110 Hs.79353 NM_007111 TFDP1 0.0645 −0.0069 −9.3060
111 Hs.379018 NM_006286 TFDP2 0.1382 0.0504 2.7391
112 Hs.408312 NM_000546 TP53 0.3084 0.1853 1.6645
113 Hs.406693 NM_003334 UBE1 0.0257 0.1261 0.2037
114 Blank 0.0428 0.0150 2.8497
115 N/A L08752 PUC18 0.1037 0.0852 1.2171
116 Blank −0.0228 −0.0449 0.5077
117 Blank −0.0200 0.0299 −0.6692
118 N/A N/A AS1R2 0.0319 0.0395 0.8082
119 N/A N/A AS1R1 0.3081 0.1775 1.7356
120 N/A N/A AS1 0.8820 0.7096 1.2428
121 Hs.544577 NM_002046 GAPD 0.8549 1.3506 0.6330
122 Hs.534255 NM_004048 B2M 0.2289 0.1485 1.5413
123 Hs.509736 NM_007355 HSPCB 0.7179 1.0587 0.6781
124 Hs.509736 NM_007355 HSPCB 0.7975 0.9087 0.8776
125 Hs.520640 NM_001101 ACTB 1.6684 1.4658 1.1382
126 Hs.520640 NM_001101 ACTB 1.7616 1.3268 1.3277
127 N/A N/A BAS2C 2.1083 1.4589 1.4451
128 N/A N/A BAS2C 2.0903 1.4185 1.4736
* As default, Group 1 is used as control group.
Project Pao Pereira DNA damage 100 ug/ml Pao, 24 hr, LNCaP
Catalog # Oligo GEArray ® Human DNA Damage Signaling Pathway
Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 116
Normalization Selected genes: positions 1, 121, 123, 124, 125, 126
Array Name Pao Rx DNA damage scan dark.tif
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 0.776 0.898 0.864
2 Hs.431048 NM_005157 ABL1 −0.000 0.057 −0.006
3 Hs.518804 NM_198889 ANKRD17 0.004 0.010 0.467
4 Hs.73722 NM_080649 APEX1 0.009 0.113 0.080
5 Hs.154149 NM_014481 APEX2 −0.044 −0.017 2.615
6 Hs.435561 NM_000051 ATM 0.335 0.181 1.857
7 Hs.271791 NM_001184 ATR −0.015 −0.031 0.501
8 Hs.533526 NM_000489 ATRX 0.024 0.009 2.752
9 Hs.194143 NM_007294 BRCA1 1.480 0.030 49.394
10 Hs.34012 NM_000059 BRCA2 0.020 0.034 0.600
11 Hs.519162 NM_006763 BTG2 0.088 −0.029 −3.060
12 Hs.146607 NM_001239 CCNH 0.065 0.093 0.695
13 Hs.184298 NM_001799 CDK7 0.019 −0.025 −0.775
14 Hs.24529 NM_001274 CHEK1 −0.002 −0.034 0.047
15 Hs.291363 NM_007194 CHEK2 −0.005 −0.054 0.100
16 Hs.135471 NM_006384 CIB1 0.317 0.826 0.384
17 Hs.249129 NM_001279 CIDEA −0.014 0.033 −0.426
18 Hs.448590 NM_014430 CIDEB −0.006 0.054 −0.112
19 Hs.435237 NM_000082 ERCC8 0.065 −0.010 −6.217
20 Hs.151573 NM_004075 CRY1 0.061 −0.025 −2.399
21 Hs.532491 NM_021117 CRY2 0.030 −0.084 −0.357
22 Hs.290758 NM_001923 DDB1 −0.005 −0.063 0.076
23 Hs.446564 NM_000107 DDB2 −0.022 −0.072 0.309
24 Hs.505777 NM_004083 DDIT3 0.876 0.035 24.790
25 Hs.339396 NM_007068 DMC1 −0.047 0.041 −1.139
26 Hs.435981 NM_001983 ERCCI 0.044 0.132 0.333
27 Hs.487294 NM_000400 ERCC2 0.055 −0.036 −1.514
28 Hs.469872 NM_000122 ERCC3 0.161 −0.024 −6.716
29 Hs.460019 NM_005236 ERCC4 0.028 −0.075 −0.368
30 Hs.258429 NM_000123 ERCC5 −0.069 −0.050 1.378
31 Hs.498248 NM_130398 EXO1 −0.066 −0.098 0.675
32 Hs.434873 NM_004629 FANCG −0.044 −0.082 0.528
33 Hs.409065 NM_004111 FEN1 0.083 0.074 1.113
34 Hs.292493 NM_001469 G22P1 1.067 0.974 1.095
35 Hs.80409 NM_001924 GADD45A 0.379 0.047 8.015
36 Hs.9701 NM_006705 GADD45G 0.193 −0.030 −6.488
37 Hs.86161 NM_002066 GML 0.068 −0.059 −1.138
38 Hs.523510 NM_005316 GTF2H1 0.024 −0.016 −1.519
39 Hs.191356 NM_001515 GTF2H2 0.107 0.161 0.661
40 Hs.355348 NM_001516 GTF2H3 −0.108 −0.011 9.991
41 Hs.386189 NM_016426 GTSE1 0.044 −0.004 −10.361
42 Hs.152983 NM_004507 HUS1 0.099 −0.003 −36.939
43 Hs.503048 NM_002180 IGHMBP2 0.105 −0.024 −4.407
44 Hs.17253 NM_054111 IHPK3 0.019 −0.065 −0.295
45 Hs.523875 NM_001567 INPPL1 0.007 −0.067 −0.111
46 Hs.61188 NM_033276 KUB3 −0.033 −0.030 1.104
47 Hs.1770 NM_000234 LIG1 0.028 −0.033 −0.851
48 Hs.100299 NM_002311 LIG3 −0.039 −0.031 1.263
49 Hs.166091 NM_002312 LIG4 0.052 0.006 8.808
50 Hs.463978 NM_002758 MAP2K6 0.046 0.111 0.413
51 Hs.432642 NM_002969 MAPK12 0.126 −0.026 −4.904
52 Hs.35947 NM_003925 MBD4 0.036 −0.053 −0.694
53 Hs.195364 NM_000249 MLH1 0.090 0.030 2.994
54 Hs.279843 NM_014381 MLH3 −0.175 −0.034 5.158
55 Hs.509523 NM_002431 MNAT1 −0.044 0.008 −5.234
56 Hs.459596 NM_002434 MPG −0.197 0.154 −1.278
57 Hs.20555 NM_005590 MRE11A 0.125 0.017 7.281
58 Hs.156519 NM_000251 MSH2 0.126 0.072 1.757
59 Hs.280987 NM_002439 MSH3 0.124 0.011 10.811
60 Hs.216639 NM_002440 MSH4 0.114 −0.050 −2.272
61 Hs.371225 NM_002441 MSH5 0.315 0.167 1.888
62 Hs.445052 NM_000179 MSH6 0.082 0.041 1.997
63 Hs.271353 NM_012222 MUTYH 0.042 0.035 1.181
64 Hs.396494 NM_018177 N4BP2 −0.032 0.047 −0.675
65 Hs.492208 NM_002485 NBS1 0.070 0.008 8.919
66 Hs.66196 NM_002528 NTHL1 0.098 0.083 1.181
67 Hs.534331 NM_002452 NUDT1 0.173 0.039 4.398
68 Hs.380271 NM_002542 OGG1 0.112 −0.003 −41.960
69 Hs.20930 NM_020418 PCBP4 0.124 −0.054 −2.315
70 Hs.147433 NM_182649 PCNA 0.253 0.154 1.646
71 Hs.424932 NM_004208 PDCD8 0.125 0.020 6.383
72 Hs.111749 NM_000534 PMS1 0.099 0.057 1.733
73 Hs.487470 NM_000535 PMS2 0.084 −0.006 −13.301
74 Hs.278468 D38500 PMS2L4 0.110 0.033 3.311
75 Hs.278467 NM_005395 PMS2L9 0.089 −0.001 −147.706
76 Hs.78016 NM_007254 PNKP 0.056 −0.035 −1.608
77 Hs.76556 NM_014330 PPP1R15A 0.025 −0.051 −0.486
78 Hs.491682 NM_006904 PRKDC 0.034 0.001 44.059
79 Hs.531879 NM_002853 RAD1 0.057 −0.026 −2.234
80 Hs.16184 NM_002873 RAD17 −0.038 0.027 −1.397
81 Hs.375684 NM_020165 RAD18 0.155 −0.045 −3.469
82 Hs.81848 NM_006265 RAD21 0.094 0.023 4.143
83 Hs.440960 NM_005053 RAD23A 0.095 0.001 157.765
84 Hs.521640 NM_002874 RAD23B 0.206 0.048 4.307
85 Hs.242635 NM_005732 RAD50 −0.024 −0.110 0.219
86 Hs.446554 NM_002875 RAD51 0.028 −0.037 −0.776
87 Hs.412587 NM_058216 RAD51C 0.063 −0.004 −14.315
88 Hs.172587 NM_133509 RAD51L1 −0.146 0.018 −8.225
89 Hs.125244 NM_002878 RAD51L3 0.069 −0.039 −1.759
90 Hs.552577 NM_002879 RAD52 0.064 −0.025 −2.530
91 Hs.523220 NM_003579 RAD54L 0.004 −0.001 −5.353
92 Hs.240457 NM_004584 RAD9A 0.088 −0.050 −1.754
93 Hs.546282 NM_002894 RBBP8 −0.031 −0.061 0.511
94 Hs.443077 NM_016316 REV1L 0.085 −0.054 −1.572
95 Hs.461925 NM_002945 RPA1 0.044 0.041 1.081
96 Hs.487540 NM_002947 RPA3 −0.120 −0.012 10.294
97 Hs.408846 NM_022367 SEMA4A 0.030 −0.019 −1.603
98 Hs.59554 NM_014454 SESN1 −0.002 −0.028 0.056
99 Hs.211602 NM_006306 SMC1L1 −0.047 −0.025 1.911
100 Hs.81424 NM_003352 SUMO1 0.138 0.015 8.923
101 Hs.408312 NM_000546 TP53 0.182 0.288 0.631
102 Hs.192132 NM_005427 TP73 −0.025 −0.100 0.246
103 Hs.344812 NM_016381 TREX1 −0.012 −0.004 3.189
104 Hs.170835 NM_007205 TREX2 −0.089 −0.026 3.446
105 Hs.191334 NM_003362 UNG −0.049 −0.057 0.866
106 Hs.3041 NM_021147 UNG2 −0.027 −0.031 0.866
107 Hs.288867 NM_000380 XPA −0.003 −0.043 0.059
108 Hs.475538 NM_004628 XPC 0.069 −0.037 −1.883
109 Hs.98493 NM_006297 XRCC1 0.063 −0.034 −1.839
110 Hs.129727 NM_005431 XRCC2 0.020 −0.051 −0.399
111 Hs.549075 NM_005432 XRCC3 −0.059 −0.060 0.979
112 Hs.171190 NM_003401 XRCC4 0.008 0.082 0.098
113 Hs.388739 NM_021141 XRCC5 0.086 0.131 0.659
114 Hs.444451 NM_016653 ZAK 0.062 −0.056 −1.124
115 N/A L08752 PUC18 −0.010 0.002 −6.046
116 Blank 0.030 −0.019 −1.565
117 Blank −0.030 0.019 −1.565
118 N/A N/A AS1R2 0.024 −0.031 −0.772
119 N/A N/A AS1R1 0.034 0.074 0.461
120 N/A N/A AS1 0.372 0.249 1.495
121 Hs.544577 NM_002046 GAPD 0.830 0.949 0.874
122 Hs.534255 NM_004048 B2M 0.220 0.034 6.413
123 Hs.509736 NM_007355 HSPCB 0.873 0.846 1.031
124 Hs.509736 NM_007355 HSPCB 0.856 1.072 0.799
125 Hs.520640 NM_001101 ACTB 1.400 1.114 1.257
126 Hs.520640 NM_001101 ACTB 1.265 1.120 1.129
127 N/A N/A BAS2C 2.082 1.110 1.875
128 N/A N/A BAS2C 2.005 1.061 1.889
* As default, Group 1 is used as control group.
Project Rauwolfia DNA damage 500 ug/ml 24 hr LNCaP
Catalog # Oligo GEArray ® Human DNA Damage Signaling Pathway
Microarray
Density Average
Clover Clover Off
Total Arrays 2
Total Groups 2
Background Empty spots: positions 117, 116
Normalization Selected genes: positions 1, 121, 123, 124, 125, 126
Array Name Rauw Rx DNA damage scans.tif1
Assigned Group Group 1 Group 2
Position UniGene RefSeq # Symbol Group 2 Group 1 Group 2/Group 1
1 Hs.546292 NM_002954 RPS27A 0.6354 0.9338 0.6805
2 Hs.431048 NM_005157 ABL1 −0.0417 0.0205 −2.0340
3 Hs.518804 NM_198889 ANKRD17 −0.0848 −0.0055 15.4607
4 Hs.73722 NM_080649 APEX1 −0.0515 0.1662 −0.3097
5 Hs.154149 NM_014481 APEX2 −0.0692 0.0076 −9.1234
6 Hs.435561 NM_000051 ATM 0.0617 0.1933 0.3191
7 Hs.271791 NM_001184 ATR −0.0596 −0.0426 1.3992
8 Hs.533526 NM_000489 ATRX 0.1284 −0.0299 −4.3005
9 Hs.194143 NM_007294 BRCA1 0.1155 0.1689 0.6834
10 Hs.34012 NM_000059 BRCA2 −0.0404 0.0103 −3.9150
11 Hs.519162 NM_006763 BTG2 −0.0746 −0.0084 8.8919
12 Hs.146607 NM_001239 CCNH −0.0194 0.1838 −0.1055
13 Hs.184298 NM_001799 CDK7 −0.0500 −0.0158 3.1630
14 Hs.24529 NM_001274 CHEK1 −0.0584 −0.0986 0.5919
15 Hs.291363 NM_007194 CHEK2 −0.0361 −0.0624 0.5774
16 Hs.135471 NM_006384 CIB1 0.6782 0.8983 0.7549
17 Hs.249129 NM_001279 CIDEA 0.0004 0.0297 0.0140
18 Hs.448590 NM_014430 CIDEB −0.0294 −0.0242 1.2141
19 Hs.435237 NM_000082 ERCC8 −0.0554 0.0219 −2.5261
20 Hs.151573 NM_004075 CRY1 −0.0779 −0.0613 1.2712
21 Hs.532491 NM_021117 CRY2 −0.0269 −0.0423 0.6359
22 Hs.290758 NM_001923 DDB1 0.0006 −0.0534 −0.0117
23 Hs.446564 NM_000107 DDB2 −0.0008 −0.0607 0.0137
24 Hs.505777 NM_004083 DDIT3 0.9845 0.0360 27.3602
25 Hs.339396 NM_007068 DMC1 0.0336 −0.0683 −0.4916
26 Hs.435981 NM_001983 ERCC1 0.0759 0.0155 4.8972
27 Hs.487294 NM_000400 ERCC2 −0.0131 −0.0434 0.3025
28 Hs.469872 NM_000122 ERCC3 0.0027 −0.0257 −0.1056
29 Hs.460019 NM_005236 ERCC4 −0.0313 −0.0660 0.4737
30 Hs.258429 NM_000123 ERCC5 0.0361 −0.0205 −1.7594
31 Hs.498248 NM_130398 EXO1 0.0383 −0.0444 −0.8642
32 Hs.434873 NM_004629 FANCG 0.1994 −0.0245 −8.1317
33 Hs.409065 NM_004111 FEN1 0.0325 0.1731 0.1878
34 Hs.292493 NM_001469 G22P1 0.9926 0.9859 1.0068
35 Hs.80409 NM_001924 GADD45A 0.0417 0.0545 0.7642
36 Hs.9701 NM_006705 GADD45G 0.0694 0.0820 0.8466
37 Hs.86161 NM_002066 GML −0.0117 −0.0211 0.5521
38 Hs.523510 NM_005316 GTF2H1 0.0296 −0.0150 −1.9721
39 Hs.191356 NM_001515 GTF2H2 0.0790 0.1478 0.5344
40 Hs.355348 NM_001516 GTF2H3 0.2003 −0.0452 −4.4328
41 Hs.386189 NM_016426 GTSE1 0.0411 0.1202 0.3415
42 Hs.152983 NM_004507 HUS1 0.0671 −0.0718 −0.9346
43 Hs.503048 NM_002180 IGHMBP2 0.0085 −0.0340 −0.2510
44 Hs.17253 NM_054111 IHPK3 0.0227 −0.0366 −0.6202
45 Hs.523875 NM_001567 INPPL1 0.0406 −0.0286 −1.4229
46 Hs.61188 NM_033276 KUB3 0.0679 −0.0760 −0.8939
47 Hs.1770 NM_000234 LIG1 0.0361 −0.0508 −0.7093
48 Hs.100299 NM_002311 LIG3 0.2926 −0.0583 −5.0231
49 Hs.166091 NM_002312 LIG4 0.0996 −0.0568 −1.7539
50 Hs.463978 NM_002758 MAP2K6 0.0142 −0.0573 −0.2474
51 Hs.432642 NM_002969 MAPK12 −0.0177 −0.0729 0.2429
52 Hs.35947 NM_003925 MBD4 0.0240 −0.0365 −0.6572
53 Hs.195364 NM_000249 MLH1 0.0377 0.0497 0.7590
54 Hs.279843 NM_014381 MLH3 0.0338 −0.0473 −0.7141
55 Hs.509523 NM_002431 MNAT1 0.0754 −0.0192 −3.9289
56 Hs.459596 NM_002434 MPG 0.2536 0.0287 8.8305
57 Hs.20555 NM_005590 MRE11A 0.1284 −0.0755 −1.7000
58 Hs.156519 NM_000251 MSH2 0.0652 −0.0415 −1.5730
59 Hs.280987 NM_002439 MSH3 0.0213 −0.1175 −0.1810
60 Hs.216639 NM_002440 MSH4 0.0092 −0.0710 −0.1292
61 Hs.371225 NM_002441 MSH5 0.1496 0.1609 0.9301
62 Hs.445052 NM_000179 MSH6 0.1536 0.0513 2.9933
63 Hs.271353 NM_012222 MUTYH 0.1463 −0.0058 −25.1854
64 Hs.396494 NM_018177 N4BP2 0.3633 −0.0276 −13.1648
65 Hs.492208 NM_002485 NBS1 0.0648 −0.0266 −2.4344
66 Hs.66196 NM_002528 NTHL1 0.0915 −0.0097 −9.4499
67 Hs.534331 NM_002452 NUDT1 0.0163 −0.1196 −0.1360
68 Hs.380271 NM_002542 OGG1 0.0125 −0.0127 −0.9809
69 Hs.20930 NM_020418 PCBP4 0.0681 −0.0424 −1.6059
70 Hs.147433 NM_182649 PCNA 0.1517 0.1196 1.2689
71 Hs.424932 NM_004208 PDCD8 0.1836 −0.0066 −27.7528
72 Hs.111749 NM_000534 PMS1 0.3674 −0.0366 −10.0309
73 Hs.487470 NM_000535 PMS2 0.1184 −0.0239 −4.9568
74 Hs.278468 D38500 PMS2L4 0.0536 −0.0026 −20.7457
75 Hs.278467 NM_005395 PMS2L9 0.0577 −0.0126 −4.5867
76 Hs.78016 NM_007254 PNKP 0.0571 −0.0010 −58.9812
77 Hs.76556 NM_014330 PPP1R15A 0.0688 0.0079 8.6983
78 Hs.491682 NM_006904 PRKDC 0.1077 0.0828 1.3016
79 Hs.531879 NM_002853 RAD1 0.2147 0.0126 17.0552
80 Hs.16184 NM_002873 RAD17 0.3462 0.0602 5.7514
81 Hs.375684 NM_020165 RAD18 0.0844 0.0005 174.3605
82 Hs.81848 NM_006265 RAD21 0.0554 0.0347 1.5979
83 Hs.440960 NM_005053 RAD23A 0.0796 0.0040 19.7350
84 Hs.521640 NM_002874 RAD23B 0.1207 0.1649 0.7317
85 Hs.242635 NM_005732 RAD50 −0.0102 0.0208 −0.4906
86 Hs.446554 NM_002875 RAD51 0.1002 0.0224 4.4694
87 Hs.412587 NM_058216 RAD51C 0.3126 0.0616 5.0716
88 Hs.172587 NM_133509 RAD51L1 0.2734 0.1962 1.3935
89 Hs.125244 NM_002878 RAD51L3 0.1080 −0.0608 −1.7746
90 Hs.552577 NM_002879 RAD52 −0.0046 −0.0423 0.1085
91 Hs.523220 NM_003579 RAD54L 0.0146 −0.0160 −0.9132
92 Hs.240457 NM_004584 RAD9A 0.0523 0.0403 1.2967
93 Hs.546282 NM_002894 RBBP8 −0.0088 0.0158 −0.5535
94 Hs.443077 NM_016316 REV1L 0.0598 0.0813 0.7355
95 Hs.461925 NM_002945 RPA1 0.3061 0.1349 2.2695
96 Hs.487540 NM_002947 RPA3 0.2409 0.0896 2.6902
97 Hs.408846 NM_022367 SEMA4A 0.0596 −0.0650 −0.9166
98 Hs.59554 NM_014454 SESN1 0.0046 −0.0878 −0.0522
99 Hs.211602 NM_006306 SMC1L1 −0.0294 −0.0452 0.6504
100 Hs.81424 NM_003352 SUMO1 0.0892 0.0858 1.0391
101 Hs.408312 NM_000546 TP53 0.1676 0.3542 0.4731
102 Hs.192132 NM_005427 TP73 0.0490 0.0056 8.6719
103 Hs.344812 NM_016381 TREX1 0.1369 0.1105 1.2388
104 Hs.170835 NM_007205 TREX2 0.2392 0.0889 2.6909
105 Hs.191334 NM_003362 UNG 0.0117 −0.0269 −0.4331
106 Hs.3041 NM_021147 UNG2 −0.0131 −0.0850 0.1544
107 Hs.288867 NM_000380 XPA −0.0244 0.0261 −0.9328
108 Hs.475538 NM_004628 XPC 0.0031 −0.0494 −0.0633
109 Hs.98493 NM_006297 XRCC1 −0.0210 −0.0313 0.6724
110 Hs.129727 NM_005431 XRCC2 0.0306 0.0127 2.4033
111 Hs.549075 NM_005432 XRCC3 0.2405 0.0118 20.4173
112 Hs.171190 NM_003401 XRCC4 0.2501 0.0694 3.6044
113 Hs.388739 NM_021141 XRCC5 0.0681 0.0699 0.9754
114 Hs.444451 NM_016653 ZAK 0.0117 −0.0035 −3.2876
115 N/A L08752 PUC18 −0.0390 0.0203 −1.9168
116 Blank 0.0044 0.0082 0.5318
117 Blank −0.0044 −0.0082 0.5318
118 N/A N/A AS1R2 0.0990 0.0157 6.3246
119 N/A N/A AS1R1 0.2345 0.0536 4.3765
120 N/A N/A AS1 0.3899 0.1944 2.0054
121 Hs.544577 NM_002046 GAPD 0.3374 0.9567 0.3527
122 Hs.534255 NM_004048 B2M 0.0977 0.0687 1.4219
123 Hs.509736 NM_007355 HSPCB 0.9589 1.0138 0.9458
124 Hs.509736 NM_007355 HSPCB 0.9947 1.0253 0.9702
125 Hs.520640 NM_001101 ACTB 1.5266 1.0338 1.4766
126 Hs.520640 NM_001101 ACTB 1.5470 1.0366 1.4924
127 N/A N/A BAS2C 1.5366 1.0200 1.5065
128 N/A N/A BAS2C 1.5714 0.9833 1.5980
* As default, Group 1 is used as control group.
