Metal oxide nano-composite magnetic material, fabrication method, and method for linkage, enrichment, and isolation of phosphorylated species
The present invention relates to a metal oxide nano-composite magnetic material, fabrication method, and method for linkage, enrichment, and isolation of phosphorylated species. The metal oxide nano-composite magnetic material comprises the magnetic iron oxide nanoparticle, a silica layer immobilized onto the magnetic iron oxide nanoparticle and a metal oxide layer coated onto the silica layer. The magnetic iron oxide nanoparticles can be used for absorbing microwave radiation to accelerate the enrichment and linkage for phosphorylated species onto the metal oxide nano-composite magnetic material. Furthermore, the magnetic property of magnetic iron oxide nanoparticles leads to isolation of the metal oxide nano-composite magnetic material-target species conjugates by simply employing an external magnetic field. The specificity of the metal oxide on the surface of the metal oxide nano-composite magnetic material for phosphorylated species also leads to the linkage/enrichment of phosphorylated species with high selectivity.
This application is a Divisional patent application of co-pending application Ser. No. 12/101,451, filed on 11 Apr. 2008. The entire disclosure of the prior application, Ser. No. 12/101,451, from which an oath or declaration is supplied, is considered a part of the disclosure of the accompanying Divisional application and is hereby incorporated by reference. This Application is further based on Provisional Application Ser. No. 60/940,505, filed 29 May 2007.
BACKGROUND OF THE INVENTION1. Field of the Invention
The invention displays the fabrication method for a metal oxide nano-composite magnetic material and their uses in linkage, enrichment, and isolation of phosphorylated species. Furthermore, this invention especially addresses the applications for the enrichment and isolation of phosphorylated peptide/proteins from complex samples by using the proposed metal oxide nano-composite magnetic nanoparticles as affinity probes.
2. Description of Related Art
Protein phosphorylation is one of the most common protein post-translational modifications. Phosphorylated proteins play an important role for signal transduction and cell regulation in biological systems. Nevertheless, the abundance of phosphorylated proteins is generally low in biological samples (Cohen, P., Nature Cell Biology 4, E127-E130 (2002)). Therefore, it is necessary to develop suitable methods for selectively enriching traces of phosphorylated proteins from complex samples. Hence, many technologies for purifying phosphorylated proteins and phosphorylated peptides have been developed. Among these technologies, immobilized metal ion chromatography (IMAC), which immobilizes Fe3+ and Ga3+ onto solid substrates, has been used for purification of phosphorylated species from complex samples by Ficarro, S. B. et al., Nature Biotechnology 19, 301-305 (2002). The phosphorylated species can strongly interact with metal ions on the IMAC substrate.
Although IMAC has been widely used for purifications of phosphorylated proteins/peptides, there are some problems arising in IMAC. For example, non-specific binding, which may result in low sensitivity and poor extraction capacity, remains a problem in IMAC that has been investigated by Thomas, K. et al., J. Mass Spectrom. 38, 131-137 (2003). Metal oxide affinity chromatography (MOAC) is an alternative approach used for selectively enriching phosphorylated proteins/peptides based on the interaction between metal oxides and phosphates (Wolschin, F. et al., Proteomics 5, 4389-4397 (2005)). Conventionally, chromatographic columns packed with metal oxide coated beads are used for the enrichment of phosphorylated species. Columns packed with titanium oxide and zirconium oxide have been employed in MOAC for enriching phosphorylated peptides/proteins by Cantin, G. T. et al., Anal. Chem. 79, 4666-4673 (2007); Sugiyama N. et al., Mol. Cell Proteomics 6, 1103-1109 (2007). For ease of use, we have previously demonstrated that titanium oxide/zirconium coated magnetic nanoparticles can be used as effective affinity probes for phosphopeptides/proteins (Chen, C. T. and Chen, Y. C. Anal. Chem. 77, 5912-5919 (2005); Lo, C. Y.; Chen, W. Y.; Chen, C. T. and Chen, Y. C. J. Proteome Res. 6, 887-893 (2007)). This approach greatly simplifies the steps for isolation of probe target species from sample solutions because probe-target species conjugates can easily be isolated by magnetic separation. Moreover, the problem of non-specific binding is greatly reduced. We further explore several types of metal oxide coated magnetic nanoparticles (MOMNPs), which is the invention presented herein. In addition, microwave heating is utilized in accelerating the enrichment of phosphorylated proteins/peptides by MOMNPs because magnetic nanoparticles (MNPs) are good microwave absorbers, first investigated by Walkeiwicz, J. W. et al., Miner. Metall. Proc. 124, 247-252 (1988). Chen, W. Y. and Chen, Y. C. Anal. Chem. 79, 8061-8066 (2007), have previously demonstrated that extraction of traces of oligonucleotides from a sample solution could be completed using MNPs as the adsorbents under microwave heating within 30 sec. This invention also combines this technique to this MOMNPs approach. It has been demonstrated that metal oxide nano-composite magnetic material can be used to selectively enrich traces of phosphorylated species from complex samples within 30˜90 sec and then the target species of metal oxide nano-composite magnetic material can be characterized by matrix-assisted laser desorption/ionization mass spectrometry (MALDI MS). Thus, the advantages of the present invention involve short analysis time, high specificity, and high sensitivity.
BRIEF SUMMARY OF THE INVENTIONThe present invention relates to a method by employing metal oxide nano-composite magnetic materials for linkage, enrichment, and isolation of phosphorylated species. That is, phosphorylated species such as phosphopeptides and phosphoproteins can be selectively trapped on the surface of the metal oxide nano-composite magnetic material. Functional molecules, which have the capability of targeting specific species, with phosphate functional groups can be readily linked with the metal oxide nano-composite magnetic material via chelating by simply mixing them together. Furthermore, this present invention provides an extremely simple method for fabrication of functional magnetic nanoparticles. That is, the metal oxide nano-composite magnetic material accelerating microwave-assisted linkage/enrichment of phosphorylated species, which only requires 30˜90 sec, is demonstrated in this invention. Moreover, based on the magnetic property of the metal oxide nano-composite magnetic material, the metal oxide nano-composite magnetic material-target species can be rapidly isolated from sample solutions by employing a magnetic field. Thus, the main advantage of this present invention is its high selectivity and speed.
In the drawings forming a part of this disclosure,
The present invention is susceptible to embodiment in various forms as shown in the drawings. However, a preferred embodiment will be described with the understanding that the present disclosure is to be considered an exemplification of the invention and is not intended to limit the invention of the specific embodiments illustrated.
Referring to
- S11 generating magnetic iron oxide nanoparticles 11.
- S12 immobilizing a silica layer 12 onto the magnetic iron oxide nanoparticle 11 to form a silica coated magnetic iron oxide nanoparticle 2.
- S13 coating at least one metal oxide layers 13 onto the surface of the silica coated magnetic iron oxide nanoparticle 13.
The step S11 is carried out by reacting iron chloride with aqueous sodium sulfite in hydrochloric acid solution or by mixing FeCl3 and FeCl2 in aqueous hydrochloric acid, followed by reacting with ammonia.
The step S12 is performed by reacting sodium silicate with the magnetic iron oxide nanoparticle or by reacting tetraethoxysilane and ammonia with the magnetic iron oxide nanoparticle.
The step S13 is carried out by reacting the silica coated magnetic iron oxide nanoparticle with aluminum isopropoxide to generate a metal oxide nano-composite magnetic material or by reacting niobium oxide sol-gel with the silica coated magnetic nanoparticle. The step of generating niobium oxide sol-gel is carried out by reacting niobium ethoxide in the solvent of ethanol and acetylacetone, followed by the addition of acetic acid.
Referring to
- S21 mixing metal oxide nano-composite magnetic material 1 with sample solutions containing phosphorylated 3 species in a vial 4.
- S22 carrying out linkage and enrichment of phosphorylated species on the metal oxide nano-composite magnetic material under either microwave heating (by a microwave oven 5) or pipetting (by a pipet 6).
- S23 isolating the metal oxide nano-composite magnetic material-phosphorylated species conjugates 7 from the sample solution by employing an external magnet 8.
The step S21 is carried out in aqueous trifluoroacetic acid.
In the step S22, microwave heating time is 30˜90 seconds. Also, the step S22 is based on the chelating capability of phosphates on the phosphorylated species and the metal on metal oxides such as aluminum and niobium on the metal oxide nano-composite magnetic material.
After the step S23, further comprises a step of confirming the phosphorylated species enriched by the metal oxide nano-composite magnetic material is carried out by MALDI MS.
First Preferred Embodiment Methods for Generating Metal Oxide Nano-Composite Magnetic Materials:magnetic iron oxide nanoparticles were prepared by the steps described as follows. Iron(III) chloride (FeCl3.6H2O, 6.48 g) was dissolved in hydrochloric acid (2 M, 12 mL) and then diluted in 100 mL of water. The mixture was degassed using a pump. Sodium sulfite (50 mL, 0.08 M) was slowly added to the solution under nitrogen with stirring at room temperature. Subsequently, ammonia (5%, 45 mL) was added slowly to the reaction solution with vigorously stirring at room temperature. The whole mixture was left to react for 30 min in a water bath at 70° C. The magnetic iron oxide nanoparticles were rinsed with deionized water three times.
The magnetic iron oxide nanoparticles in water (5 mg/mL, 40 mL) was well suspended in an air-free condition by sonication under nitrogen gas. Sodium silicate aqueous solution (0.6%, pH 9, 40 mL) was added into the solution and was vortex-mixed for 24 h at 35° C. to coat a thin film of SiO2 onto the surfaces of the magnetic iron oxide nanoparticle.to form a silica coated magnetic iron oxide nanoparticle. The silica coated magnetic iron oxide nanoparticles were then rinsed with deionized water (40 mL×3), re-suspended in deionized water (40 mL), followed by sonication for 30 min. Aluminum isopropoxide (6 mg) was added to the nanoparticle solution followed by sonication for 30 min at room temperature. The mixture in a reaction vial was reacted at 80° C. in an oil bath with vigorously stirring for 1 h, and then the cap of the vial was opened to remove the generated gas (i.e., 2-propanol). The mixture was reacted at 90° C. for 30 min, followed by the reflux at 90° C. for another 2 h. After the mixture was cooled to room temperature, a metal oxide nano-composite magnetic material were isolated, rinsed with water (40 mL×3), and re-suspended in water before use.
α-Casein was prepared in an ammonium bicarbonate solution (0.5 mL, 50 mM) followed by incubation at 38° C. for 30 min. Dithiothreitol (DTT) (50 μL, 100 mM) prepared in ammonium bicarbonate solution (50 mM) was added into this mixture, which was maintained at 50° C. for 1 h. After cooling to room temperature, the sample solution was mixed with iodoacetic acid (IAA) solution (50 μL, 200 mM) prepared in ammonium bicarbonate solution (50 mM) in an ice bath. The sample vial was wrapped with aluminum foil and mixed by vortex mixing for 2.5 h at room temperature. After 2.5 h, the sample solution was ready for carrying out either the enrichment process by the magnetic particles or tryptic digestion. When tryptic digestion was carried out, the denatured α-casein (2 mg/mL, 0.5 mL) obtained above was incubated with trypsin (2 mg/mL, 10 μL) at 37° C. for 18 h. The digestion product was called sample A1.
Sample E1 (10−6M) and E2 (5×10−10M) were obtained by diluting sample A1 with aqueous ammonium bicarbonate (50 mM). 2,5-dihydroxy benzoic acid (30 mg/mL) prepared in the mixture of acetonitrile and deionized water (2/1, v/v) containing 1% phosphoric acid was used as the MALDI matrix.
Protein mixtures were prepared in ammonium bicarbonate solution (0.5 mL, 50 mM) containing urea (8 M), while the milk (0.25 mL) was mixed with the same solution (0.25 mL), followed by incubation at 38° C. for 30 min. A DTT (50 μL, 100 mM) prepared in ammonium bicarbonate solution (50 mM) was added into this mixture, which was maintained at 50° C. for 1 h. After cooling to room temperature, the sample solution was mixed with IAA solution (50 μL, 200 mM) prepared in ammonium bicarbonate solution (50 mM) in an ice bath. The sample vial was wrapped with aluminum foil and mixed by vortex mixing for 2.5 h at room temperature. After 2.5 h, the sample solution (sample A2) was ready for carrying out either the enrichment process by the magnetic particles or tryptic digestion.
To demonstrate the feasibility of employing this approach to a real sample, the nanoparticles of the metal oxide nano-composite magnetic material are used to selectively trap phosphoproteins from a milk sample (sample A2), which commonly contains abundant proteins including phosphoproteins (i.e., α- & β-caseins). Sinapinic acid (30 mg/mL) prepared in an acetonitrile/deionized water (2/1, v/v) solution containing 1% phosphoric acid was used as the MALDI matrix for the analysis of sample A2.
FeCl3 (2 g) and FeCl2 (5.4 g) were dissolved in aqueous hydrochloric acid (2 M, 25 mL) at room temperature under sonication. After the salts had dissolved completely in the solution, the mixture was degassed using a vacuum pump and then the flask was filled with nitrogen gas. Aqueous ammonia (25%, 40 mL) was slowly injected into the mixture under nitrogen while stirring at room temperature, followed by rinsing with deionized water three times and re-suspension in ethanol (40 mL). The final concentration of the magnetic iron oxide nanoparticle suspension was 40 mg/mL.
The magnetic iron oxide nanoparticles solution (40 mg/mL, 23 mL) obtained above was sonicated with ethanol (35 mL) and deionized water (6 mL) for 10 min. Tetraethoxysilane (TEOS, 1.5 mL) was added, and the mixture was then sonicated for 10 min; aqueous ammonia (10%, 1.4 mL) was then added slowly over 5 min. The mixture was stirred in a water bath (40° C.) for 12 h. Subsequently, the magnetic iron oxide nanoparticles coated with thin film of silica (silica coated magnetic iron oxide nanoparticle, Fe3O4@SiO2) in the mixture were rinsed with ethanol and re-suspended in ethanol (40 mL). The concentration of Fe3O4@SiO2 in the suspension was 14 mg/mL; it was stored at 4° C. in a refrigerator prior to use.
Niobium oxide sol was prepared by stirring niobium ethoxide (0.5 mL) with a mixture of ethanol (3.656 mL) and acetylacetone (2.056 mL) at a mole ratio 1:20:1 for 12 h, followed by the addition of acetic acid (99.8%, 200 μL). The Fe3O4@SiO2 suspension (14 mg/mL, 1 mL) obtained above was sonicated with ethanol (15 mL) for 30 min and then niobium oxide sol (3 mL) was added. The mixture was stirred in a water bath at 70° C. for 6 h. The generated Fe3O4@Nb2O5 nanoparticles (Nb2O5 coated onto the surface of the silica coated magnetic iron oxide nanoparticle) were rinsed several times with ethanol and deionized water, then they were re-suspended in deionized water. The concentration of Fe3O4@Nb2O5 nanoparticles in the suspension was 0.74 mg/mL; it was stored at 4° C. in a refrigerator prior to use. Methods for linkage, enrichment, and isolation of phosphorylated species
Samples E3 (4×10−7M), E4 (4×10−8M), E5 (4×10−9M), and E6 (10−9M) were obtained by diluting sample A1 with aqueous ammonium bicarbonate aqueous solution (50 mM) followed by 10-fold dilution with 0.15 TFA. Niobium oxide-coated magnetic nanoparticles (Fe3O4@Nb2O5 nanoparticle) (12 μg) isolated from the suspension solution were added to E3˜E6 (50 μL). To perform an enrichment experiment, the mixture was placed in a domestic microwave oven and was heated for 1 min (900 W). The Fe3O4@Nb2O5 nanoparticles (the metal oxide nano-composite magnetic material of this invntion) conjugated to their target species were then aggregated on the vial wall by positioning a magnet on the outside of the sample vial so that the solution could be easily removed using a pipette. The isolated nanoparticles were rinsed with 0.15% TFA solution (3×160 μL) in acetonitrile/deionized water (1:1, v/v), mixing vigorously each time with a pipette to wash out any unbound impurities. The rinsed nanoparticles were mixed with 2, 5-DHB solution (30 mg/mL, 0.8 μL) prepared in acetonitrile/deionized water (2:1, v/v) containing 0.5% phosphoric acid. The mixture was deposited on a MALDI sample plate. After evaporation of the solvent, the sample was ready for MALDI MS analysis.
The present invention aims to demonstrate the methods for fabrication of metal oxide nano-composite magnetic materials and their use for the linkage, enrichment, and isolation of phosphorylated species from complex samples. On the basis of magnetic property, affinity with phosphorylated species, and the capability of absorbing microwave radiation, the metal oxide nano-composite magnetic nanoparticles presented in the current invention have multi-functions. As a consequence, the nanoparticles can be effectively used for either linking or enriching phosphorylated species such as phosphoproteins and phosphopeptides from complex samples with high specificity under microwave heating within 30˜90 sec. The time required to carry out the whole process is extremely short compared to that has ever been reported. Thus, the advantages of the present invention include small-sample consumption, high specificity, high sensitivity, high extraction efficiency, ease of operation, and short analysis time. While certain preferred embodiments of the present invention have been disclosed in details, it is to be understood that various modifications such as using different metal oxides for fabrication of the shell of magnetic nanoparticles may be adopted without departing from the spirit of the invention or the scope of the following claims.
Claims
1. Method for linkage, enrichment, and isolation of phosphorylated species on the metal oxide nano-composite magnetic material comprises the following steps:
- mixing metal oxide nano-composite magnetic material with sample solution containing phosphorylated species;
- carrying out linkage and enrichment of phosphorylated species on the metal oxide nano-composite magnetic material under either microwave heating or pipetting; and
- isolating the metal oxide nano-composite magnetic material-phosphorylated species conjugates from the sample solution by employing an external magnet.
2. Method for linkage, enrichment, and isolation of phosphorylated species on the metal oxide nano-composite magnetic material of claim 1, wherein the step of carrying out linkage and enrichment of phosphorylated species on the metal oxide nano-composite magnetic material under microwave heating for 30˜90 seconds.
3. Method for linkage, enrichment, and isolation of phosphorylated species on the metal oxide nano-composite magnetic material of claim 1, further comprising a step of confirming the phosphorylated species enriched by the metal oxide nano-composite magnetic material is carried out by MALDI MS after the step of isolating the nano-composite magnetic material-phosphorylated species conjugates from the sample solution by employing an external magnet.
4. Method for linkage, enrichment, and isolation of phosphorylated species on the metal oxide nano-composite magnetic material of claim 1, wherein the step of mixing metal oxide nano-composite magnetic material with sample solution containing phosphorylated species is carried out in aqueous trifluoroacetic acid.
5. Method for linkage, enrichment, and isolation of phosphorylated species on the metal oxide nano-composite magnetic material of claim 1, wherein the step of carrying out linkage and enrichment of phosphorylated species on the metal oxide nano-composite magnetic material under either microwave heating or pipetting is based on the chelating capability of phosphates on the phosphorylated species and the metal on metal oxides such as aluminum and niobium on the metal oxide nano-composite magnetic material.
Type: Application
Filed: Nov 17, 2009
Publication Date: Jul 22, 2010
Inventors: Yu-Chie Chen (Hsinchu), Cheng-Tai Chen (Jhongli City), Wei-Yu Chen (Taipei City), Chun-Yuen Lo (Kaohsiung City), Hong-Yi Lin (Pingjhen City), Chih Chi Liu (Chiayi City)
Application Number: 12/591,325
International Classification: C07K 1/14 (20060101);
