Detection of Degradation Products of Feline NT-proBNP
A method for determining the amount of NT-proBNP in blood samples from felines. The method includes detecting degradation products of feline NT-proBNP by various methods, including using antibodies, kits and devices.
This application is a continuation of U.S. patent application Ser. No. 13/918,465, filed Jun. 14, 2013, which is a continuation of U.S. patent application Ser. No. 13/485,286, filed May 31, 2012, which claims benefit of U.S. Provisional Application No. 61/491,580 filed May 31, 2011, all of which are incorporated herein by reference in their entirety.
SEQUENCE LISTING STATEMENTThe sequence listing is filed in this application in electronic format only and is incorporated by reference herein. The sequence listing text file “10-999-US-CON SeqListing_ST25.txt” was created on Jun. 12, 2013, and is 7.13 bytes in size.
BACKGROUND1. Field of the Invention
The invention is related to the detection of NT-proBNP in biological samples from felines.
2. Description of Related Art
Heart diseases play an important role in animal health, including non-human animals. Heart diseases concern, for example, the cardiac valves and the cardiac muscle. Because the heart is capable of compensating functional impairment by working harder, such diseases in most cases remain hidden, with the consequence that the state of the heart will deteriorate due to the increased load on the heart. The symptoms resulting from heart diseases, such as fatigue, circulatory insufficiency, and languor are usually recognized when the animal's heart is no longer able to compensate for the weakness. In such a case, the heart disease has progressed to the point that curing the disease is no longer possible.
While chronic cardiac valve and cardiac muscle changes are usually not curable, the use of medicaments can slow the further progress of the disease. Therefore, an early diagnosis for heart diseases is preferred. Routinely, physical methods are used for this purpose, such as auscultation of the heart sounds, the recording of an electrocardiogram, and X-ray and ultrasonic examinations. These examination methods have the disadvantage that they are carried out only when already visible or audible defects of the heart are recognized. Furthermore, physical examination methods require suitable and generally expensive devices in order to carry out a respective diagnosis.
In many heart diseases, such as, e.g., heart decompensation and dilated cardiomyopathy, a peptide hormone—the so-called BNP (brain natriuretic peptide)—is secreted by heart muscle tissue. Since this hormone is produced in the heart and is increasingly produced in case of an overstress and congestion of the heart, determining the BNP level in blood is a suitable means for evaluating cardiac insufficiency.
BNP as well as other natriuretic peptides play an important part in regulating water balance and blood pressure. If the cardiac wall is dilated, it secrets BNP in increasing amounts, which in turn causes an excretion of sodium and liquid via the kidneys and a dilation of the blood vessels. These factors can lower the blood pressure and the filling level of the heart. BNP is synthesized by the cells of the cardiac muscle as proBNP, which is cleaved into N-terminal proBNP (NT-proBNP) and BNP. Both parts of the polypeptide are delivered to the blood and can be determined therein.
The utility of both BNP and NT-proBNP as makers for cardiac disease in veterinary patients (e.g., dogs and cats) has been demonstrated in numerous studies. For instance, BNP and NT-proBNP assays have been shown to be effective as a diagnostic test for dogs, as illustrated by two studies, which report remarkably similar sensitivity and specificity (85% and 82% respectively) for differentiating the cause of clinical signs that may be attributable to cardiac disease in dogs. See Oyama M A, et al., “Assessment of serum N-terminal pro-B-type natriuretic peptide concentration for differentiation of congestive heart failure from primary respiratory tract disease as the cause of respiratory signs in dogs,” Journal of American Veterinary Medical Association (December 2009); Boswood et al., “The diagnostic accuracy of different natriuretic peptides in the investigation of canine cardiac disease,” JSAP 2007 1-7. In cats, the clinical challenge is different, as the most common cardiac disease in cats is hypertrophic cardiomyopathy. This disease remains occult or ‘silent’ with very few clinical signs that are appreciable to the pet owner until the disease is very advanced.
A number of immunoassays for the detection of NT-proBNP are known. These assays use polyclonal or monoclonal antibodies specific for epitopes within various regions of the peptide. These methods, however, are subject to variability because NT-proBNP is further processed ex vivo by various proteases in the blood serum and plasma. Therefore, immunoassays for NT-proBNP are inherently vulnerable to inconsistency due to the ex vivo degradation of the protein over time. Therefore, samples to be tested for NT-proBNP are typically refrigerated and efforts are made to conduct sample analysis as quickly as possible following taking of the sample.
Accordingly, the inventors have identified a need in the art for a method of determining NT-proBNP that can measure NT-proBNP without regard to when a sample was taken and without cumbersome handling requirements for the sample.
SUMMARYIn one aspect, the invention is directed to a method for determining the amount of NT-proBNP in a sample from a feline. The method includes determining the amount of a polypeptide selected from a sequence consisting essentially of one of ASEASAIQELLDGLRDTVSEL (SEQ ID NO: 5), LGPLQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:9) and LQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:10) in the sample, and correlating the amount of the polypeptide in the sample to the amount of NT-proBNP in the sample.
In various aspects, the amount of polypeptide can be determined with mass spectrometry or an immunoassay. For instance, the immunoassay can include (a) contacting the sample with a first antibody that specifically binds a polypeptide selected from a sequence consisting essentially of one of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10, (b) determining the amount of binding of the NT-proBNP in the sample to the first antibody, and (c) associating the amount of binding to the amount of NT-proBNP in the sample. In one example, the determining step includes further includes contacting a complex formed by the first antibody and the NT-proBNP in the sample with a second antibody specific for feline NT-proBNP that is directly or indirectly conjugated to a label and detecting the amount of the label associated with the complex. In this aspect, the first antibody and the second antibody do not compete for binding to the same epitope on NT-proBNP. The second antibody may be specific for one of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10.
The method may also include the use of a standard, and includes contacting a standard comprising recombinant NT-proBNP with the first antibody, detecting the binding of the standard to the first antibody, and comparing the amount of binding of the first antibody to the NT-proBNP in the sample to the amount of binding of the first antibody to the standard. Similarly, the method may include contacting a standard comprising recombinant NT-proBNP with the first antibody and the second antibody, and comparing a signal from the label of the second antibody that is bound to the NT-proBNP in the sample to the signal from the label of the second antibody that is bound to the standard.
In selected aspects of the invention, the antibodies are monoclonal or polyclonal antibodies raised against a polypeptide selected from a sequence consisting essentially of one of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10.
In a further aspect, the invention is directed to a method for determining the presence or amount of NT-proBNP in a biological sample. The method includes: (a) forming a mixture of the sample with a first monoclonal antibody that specifically binds NT-proBNP, wherein the first monoclonal antibody is conjugated to a label; (b) allowing the NT-proBNP in the sample and the first monoclonal antibody to form a complex; (c) contacting the mixture with a second antibody that binds to NT-proBNP wherein the second antibody is immobilized on a solid phase; and (d) detecting the presence or amount of the label on the solid phase.
In yet another aspect, the invention is directed to a method for determining the presence or amount of NT-proBNP in a biological sample, which includes detecting a degradation product of NT-proBNP in the sample. The method can use a mass spectrometer or at least one antibody or two antibodies directed towards two different epitopes on the degradation product.
Still further, the invention is directed to a kit for determining the presence, absence or level of feline NT-proBNP in a sample. The components of the kit include a solid support; a first antibody, the first antibody being specific for a first epitope on a fragment of feline NT-proBNP, the fragment being less than the full length of feline NT-proBNP and being stable in feline serum or plasma at room temperature after at least 192 hours from taking the sample; and a second antibody being specific for a second epitope on the fragment of feline NT-proBNP, the second epitope being different than the first epitope.
The invention is also directed to an immunoassay device that includes: a solid support having a first antibody bound thereto, the first antibody being specific for a first epitope on a fragment of feline NT-proBNP; a fragment of feline NT-proBNP being bound to the first antibody, the fragment being less than the full length of feline NT-proBNP and being stable in feline serum or plasma at room temperature after at least 192 hours from taking the sample; and a second antibody being specific for a second epitope on the fragment of feline NT-proBNP, the second epitope being different than the first epitope, the second antibody being bound to the fragment of feline NT-proBNP.
In various aspects of the kit and the device, the fragment of feline NT-proBNP is selected from the group consisting of ASEASAIQELLDGLRDTVSEL (SEQ ID NO: 5); LGPLQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:9) and LQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:10).
In a further aspect, the invention is direct to a method for determining the presence or amount of feline NT-proBNP in a biological sample. The method includes:
-
- a. providing a first antibody that binds at least one of the following peptides:
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- b. providing a sample suspected of containing feline NT-proBNP or fragments thereof;
- c. contacting the sample with the first antibody to provide an antibody/peptide complex;
- d. providing a second antibody that forms a complex with the antibody/peptide complex; and
- e. detecting the presence, absence or amount of the antibody/peptide/antibody complex.
Degradation products of NT-proBNP can be determined to provide an accurate and reliable measurement of the original amount of NT-proBNP in a fresh blood sample. Because the stable degradation products, and not the NT-proBNP itself, are determined, the urgency to test the sample immediately or to refrigerate the sample prior to testing is eliminated.
There are several ways to assay a sample (e.g. whole blood, serum or plasma) for NT-proBNP or its degradation products. Mass Spectrometry, for example, can be used to look for a particular peptide sequence (e.g. full length NT-proBNP or a portion thereof). Immunoassay techniques can also be used to directly or indirectly detect full length NT-proBNP or a portion thereof. In a direct assay format, monoclonal antibodies, polyclonal antibodies or combinations thereof can be used to capture and detect full length or fragments of NT-proBNP (e.g.,“sandwich” assays where one antibody captures the target analyte and a second, labeled antibody detects the captured analyte).
When assaying for NT-proBNP fragments in a sandwich assay, it is important to ensure the antibody pair is specific for epitopes that exist on the target, i.e. the assay will miss the fragment if one or more of the epitopes are cleaved from the original peptide or otherwise become compromised or inactivated. For example, assuming the line below is full length feline |NT-proBNP|. Over time, the peptide degrades into portions {A}, [B] and <C>, where [B] and <C> are degradation products of A:
An antibody pair, one directed to an epitope on [B] and the other to an epitope on <C>, will work in a sandwich assay for {A} (or the full length peptide) as long as {A} does not degrade into [B] and <C>. If {A} degrades into [B] and <C>, a working assay for this section of the full peptide would need to have an antibody pair directed towards active epitopes on either [B] or <C>.
Alternatively, in a competition immunoassay format, only one epitope of a target fragment need be identified and targeted with either a monoclonal or polyclonal antibody. In this format, if the fragment/epitope is present, it will bind with the antibody and “compete” with a detection reagent that would have otherwise bound to the antibody.
Preferred target NT-proBNP fragments (discussed in detail, below) are those that exist in detectable concentrations over time. By determining those fragments that are stable over time one can choose Mass Spectrometry parameters or antibodies to detect and determine the concentration of the stable fragment. Once one determines the concentration of a stable fragment, the original amount of NT-proBNP in the sample can be determined.
In order to assess the extent of heart damage or disease, the determination of the quantity of NT-proBNP in a sample is helpful. Quantitative determination of the degradation products of NT-proBNP (i.e., a polypeptide fragment of native feline NT-proBNP) can be accomplished by several methods. Once the amount of one or more of its degradation products (the analyte) in a sample is determined, the amount NT-proBNP in the sample, prior to degradation, can be determined.
Accordingly, in one aspect the invention is directed to determining the amount of NT-proBNP in a sample from a feline, wherein the method includes determining the amount of a degradation product of NT-proBNP. The amount of NT-proBNP in the sample can be used as a measurement of cardiac disease in the animal.
Substantial homology between species exists for BNP and NT-proBNP. For example,
Feline Synthetic NT-proBNP (fsNT-proBNP) has the following polypeptide sequence (SEQ ID NO:4):
As shown in
For nomenclature purposes, the feline NT-proBNP sequence can be loosely divided into two regions: the N-terminal region, which roughly includes the N-terminal half of the peptide, and the C-terminal region, which generally includes the C-terminal half of the peptide. Preferred degradation products of NT-proBNP are shown in
Preferred Feline NT-proBNP N-Terminal Peptide Plasma Degradents (
Preferred Feline NT-proBNP C-Terminal Peptide Plasma Degradents (
The most prevalent polypeptides after 192 hours were:
The invention also provides antibodies that selectively bind to one of the NT-proBNP degradation products, as well as variants and further fragments thereof. As used herein, an antibody selectively binds a target peptide when it binds the target peptide and does not significantly bind to unrelated proteins. An antibody is still considered to selectively bind a peptide even if it also binds to other proteins that are not substantially homologous with the target peptide so long as such proteins share homology with a fragment or domain of the peptide target of the antibody. In this case, it would be understood that antibody binding to the peptide is still selective despite some degree of cross-reactivity.
As used herein, an antibody is defined in terms consistent with that recognized within the art: they are multi-subunit proteins produced by a mammalian organism in response to an antigen challenge. Chimeric antibodies are also within the scope of the invention. The antibodies of the present invention include polyclonal antibodies and monoclonal antibodies, as well as fragments of such antibodies, including, but not limited to, Fab or F(ab′)2, and Fv fragments.
Many methods are known for generating and/or identifying antibodies to a given target peptide. Several such methods are described by Harlow, Antibodies, Cold Spring Harbor Press, (1989).
In general, to generate antibodies, an isolated peptide is used as an immunogen and is administered to a mammalian organism, such as a rat, rabbit or mouse. In one aspect, the antibodies of the invention are monoclonal antibodies produced by a mouse myeloma cell line. This cell line can be made by fusing a mouse myeloma cell line with the spleen cells from mice that have been injected with the NT-proBNP fragments described herein and suitable carrier proteins that are well known to those of skill in the art.
The antibodies can be used to isolate NT-proBNP or a fragment thereof by standard techniques, such as affinity chromatography or immunoprecipitation. In one aspect, the invention is directed to an immunological method for detecting the presence of an amount of NT-proBNP in a biological sample. The invention provides a method, a device and a kit that uses one or more feline NT-proBNP monoclonal antibodies. In another aspect, the method includes calibrators and standards comprising one or more NT-proBNP polypeptides.
Stable fragments NT-proBNP can also be used to purify polyclonal antibodies from sera (e.g. from chickens, goats, sheep and/or donkeys that have been immunized with all or a portion of the NT-proBNP sequence).
As used herein, antibodies that have been raised against a particular polypeptide sequence refer to polyclonal or monoclonal antibodies that have been obtained after immunizing an animal with the polypeptide, such as well known in the art, usually conjugated to a suitable carrier.
“Binding specificity” or “specific binding” refers to the substantial recognition of a first molecule for a second molecule, for example a polypeptide and a polyclonal or monoclonal antibody, or an antibody fragment (e.g. a Fv, single chain Fv, Fab′, or F(ab′)2 fragment) specific for the polypeptide.
A “specific binding pair” is a set of two different molecules, where one molecule has an area on its surface or in a cavity that specifically binds to, and is therefore complementary to, an area on the other molecule. “Specific binding partner” refers to one of these two complementarily binding molecules. “Specific binding pair” may refer to a ligand and a receptor, for example. In another example, the specific binding pair might refer to an immunological pair, for example an antigen and antibody.
“Substantial binding” or “substantially bind” refer to an amount of specific binding or recognizing between molecules in an assay mixture under particular assay conditions. In its broadest aspect, substantial binding relates to the difference between a first molecule's incapability of binding or recognizing a second molecule, and the first molecules capability of binding or recognizing a third molecule, such that the difference is sufficient to allow a meaningful assay to be conducted distinguishing specific binding under a particular set of assay conditions, which includes the relative concentrations of the molecules, and the time and temperature of an incubation. In another aspect, one molecule is substantially incapable of binding or recognizing another molecule in a cross-reactivity sense where the first molecule exhibits a reactivity for a second molecule that is less than 25%, preferably less than 10%, more preferably less than 5% of the reactivity exhibited toward a third molecule under a particular set of assay conditions, which includes the relative concentration and incubation of the molecules. Specific binding can be tested using a number of widely known methods, e.g., an immunohistochemical assay, an enzyme-linked immunosorbent assay (ELISA), a radioimmunoassay (RIA), or a western blot assay.
A “blood sample” refers to a whole blood sample from an animal or its components (e.g., serum, plasma, etc.).
A “label” is any molecule that is bound (via covalent or non-covalent means, alone or encapsulated) to another molecule or solid support and that is chosen for specific characteristics that allow detection of the labeled molecule. Generally, labels are comprised of, but are not limited to, the following types: particulate metal and metal-derivatives, radioisotopes, catalytic or enzyme-based reactants, chromogenic substrates and chromophores, fluorescent and chemiluminescent molecules, and phosphors. The utilization of a label produces a signal that may be detected by means such as detection of electromagnetic radiation or direct visualization, and that can optionally be measured.
The label employed in the current invention could be, but is not limited to: alkaline phosphatase; glucose-6-phosphate dehydrogenase (“G6PDH”); horse radish peroxidase (HRP); chemiluminescers such as isoluminol, fluorescers such as fluorescein and rhodamine compounds; ribozymes; and dyes.
The label can directly produce a signal, and therefore additional components are not required to produce a signal. Alternatively, a label may need additional components, such as substrates or co-enzymes, in order to produce a signal. The suitability and use of such labels useful for producing a signal are discussed in U.S. Pat. No. 6,489,309, and U.S. Pat. No. 5,185,243, which are incorporated by reference herein in their entirety. For example, a label may be conjugated to the specific binding partner in a non-covalent fashion. Alternatively, the label may be conjugated to the specific binding partner covalently. U.S. Pat. No. 3,817,837, and U.S. Pat. No. 3,996,345, which are incorporated by reference herein in their entirety, describe in detail example of various ways that a label may be non-covalently or covalently conjugated to the specific binding partner.
Solid phase means a porous or non-porous water insoluble material. Such materials include a support or a surface such as the wall of a reaction vessel. The support can be hydrophilic or capable of being rendered hydrophilic and includes inorganic powders such as silica, magnesium sulfate, and alumina; natural polymeric materials, particularly cellulosic materials and materials derived from cellulose, such as fiber containing papers, e.g., filter paper, chromatographic paper, etc.; synthetic or modified naturally occurring polymers, such as nitrocellulose, cellulose acetate, poly (vinyl chloride), polyacrylamide, cross linked dextran, agarose, polyacrylate, polyethylene, polypropylene, poly(4-methylbutene), polystyrene, polymethacrylate, poly(ethylene terephthalate), nylon, poly(vinyl butyrate), etc.; either used by themselves or in conjunction with other materials; glass available as Bioglass, ceramics, metals, and the like. Natural or synthetic assemblies such as liposomes, phospholipid vesicles, and cells can also be employed.
Binding of specific binding pair members to a support or surface may be accomplished by well-known techniques, commonly available in the literature. See, for example, “Immobilized Enzymes,” Ichiro Chibata, Halsted Press, New York (1978) and Cuatrecasas, J. Biol. Chem., 245:3059 (1970). The surface can have any one of a number of shapes, such as strip, rod, particle, including bead, and the like. In one aspect, the polypeptides of the invention include a N-terminal cysteine residue to assist in binding the polypeptides to the solid phase.
The method of the invention can be optimized in many ways and one of skill in the art could simultaneously adjust the sample dilutions, reagent concentrations, incubation temperatures and times used in the method to accomplish detection of NT-proBNP.
To be useful in the detection methods of the present invention, the polypeptides are obtained in a substantially pure form, that is, typically from about 50% w/w or more purity, substantially free of interfering proteins and contaminants. Preferably, the polypeptides are isolated or synthesized in a purity of at least 80% w/w, and more preferably, in at least about 95% w/w purity. Using conventional protein purification techniques, homogeneous polypeptide compositions of at least about 99% w/w purity can be obtained. For example, the proteins may be purified by use of the antibodies described hereinafter using the immunoabsorbant affinity columns described hereinabove.
The method of the invention may be accomplished using immunoassay techniques well known to those of skill in the art, including, but not limited to, using microplates and lateral flow devices. In one embodiment, an antibody specific for NT-proBNP protein is immobilized on a solid support at a distinct location. Following addition of the sample, detection of protein-antibody complexes on the solid support can be by any means known in the art. For example, U.S. Pat. No. 5,726,010, which is incorporated herein by reference in its entirety, describes an example of a lateral flow device, the SNAP® immunoassay device (IDEXX Laboratories), useful in the present invention. In another aspect, the solid support is a well of a microtiter plate.
Immobilization of one or more analyte capture reagents, e.g., antibodies to NT-proBNP, onto a device or solid support is performed so that an analyte capture reagent will not be washed away by the sample, diluent and/or wash procedures. One or more analyte capture reagents can be attached to a surface by physical adsorption (i.e., without the use of chemical linkers) or by chemical binding (i.e., with the use of chemical linkers). Chemical binding can generate stronger attachment of specific binding substances on a surface and provide defined orientation and conformation of the surface-bound molecules.
In another aspect, the invention includes one or more labeled specific binding reagents that can be mixed with a test sample prior to application to a device for of the invention. In this case it is not necessary to have labeled specific binding reagents deposited and dried on a specific binding reagent pad in the device. A labeled specific binding reagent, whether added to a test sample or pre-deposited on the device, can be for example, a labeled NT-proBNP monoclonal antibody.
The detection method may include the use of a standard such as a recombinant NT-proBNP polypeptide. The standard can be mixed with the monoclonal antibody or antibodies in the same manner as the sample. The amount of binding between the monoclonal antibody or antibodies and the standard can be compared to the amount of binding of the antibodies to the protein in the sample. Accordingly, because the amount of NT-proBNP in the standard is known, the amount of protein in the sample can be determined.
Any or all of the above embodiments can be provided as a kit. In one particular example, such a kit can include, for example, a solid support, a first antibody specific for a first epitope on a fragment of feline NT-proBNP. The fragment can be less than the full length of feline NT-proBNP and stable in feline serum or plasma at room temperature after at least 192 hours from taking the sample. Such fragments are described above; for example SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO:10. The kit can also include a second antibody being specific for a second epitope on the fragment of feline NT-proBNP, the second epitope being different than the first epitope.
The kit can include a device complete with specific binding reagents (e.g., a non-immobilized labeled specific binding reagent and an immobilized analyte capture reagent) and wash reagent, as well as detector reagent and positive and negative control reagents, if desired or appropriate. In addition, other additives can be included, such as stabilizers, buffers, and the like. The relative amounts of the various reagents can be varied, to provide for concentrations in solution of the reagents that substantially optimize the sensitivity of the assay. Particularly, the reagents can be provided as dry powders, usually lyophilized, which on dissolution will provide for a reagent solution having the appropriate concentrations for combining with a sample.
The device may also include a liquid reagent that transports unbound material (e.g., unreacted fluid sample and unbound specific binding reagents) away from the reaction zone (solid phase). A liquid reagent can be a wash reagent and serve only to remove unbound material from the reaction zone, or it can include a detector reagent and serve to both remove unbound material and facilitate analyte detection. For example, in the case of a specific binding reagent conjugated to an enzyme, the detector reagent includes a substrate that produces a detectable signal upon reaction with the enzyme-antibody conjugate at the reactive zone. In the case of a labeled specific binding reagent conjugated to a radioactive, fluorescent, or light-absorbing molecule, the detector reagent acts merely as a wash solution facilitating detection of complex formation at the reactive zone by washing away unbound labeled reagent.
Two or more liquid reagents can be present in a device, for example, a device can comprise a liquid reagent that acts as a wash reagent and a liquid reagent that acts as a detector reagent and facilitates analyte detection.
A liquid reagent can further include a limited quantity of an “inhibitor”, i.e., a substance that blocks the development of the detectable end product. A limited quantity is an amount of inhibitor sufficient to block end product development until most or all excess, unbound material is transported away from the second region, at which time detectable end product is produced.
In one aspect, the device is provided upon binding of NT-proBNP from the sample to the antibody immobilized on the device. Accordingly, the device has a solid support having a first antibody bound thereto, the first antibody being specific for a first epitope on a fragment of feline NT-proBNP. A fragment of feline NT-proBNP becomes bound to the first antibody, the fragment being less than the full length of feline NT-proBNP. This fragment is, for example, one of the fragments describe above and is stable in feline serum or plasma at room temperature after at least 192 hours from taking the sample. The device also includes a second antibody being specific for a second epitope on the fragment of feline NT-proBNP, the second epitope being different than the first epitope, the second antibody being bound to the fragment of feline NT-proBNP. Therefore, the device is complete upon sandwiching the fragment between the first and second antibodies, as would occur upon application of a sample containing NT-proBNP to the device.
Detection of NT-proBNP by Mass Spectrometry
Peptides and peptide fragments of the disclosure may be detected using standard mass spectrometric techniques. In mass spectrometry (MS), the analyte is first vaporized and ionized, then the ions are directed to a mass analyzer, in which electromagnetic fields are used to separate species by mass. Lastly, a detector quantifies the abundance of each species.
Standard ionization techniques that are well known in the art include electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI), which are commonly used with liquid and solid biological samples. Other ionization technologies known in the art include thermal ionization (TIMS), spark ionization, secondary ion mass spectrometry (SIMS), atmospheric pressure chemical ionization (APCI), ion attachment ionization, direct analysis in real time (DART), desorption/ionization on silicon (DIOS), thermospray ionization, fast atom bombardment (FAB), field desorption, glow discharge, and inductively couple plasma (ICP). Examples of well-known mass analyzers include sector field, time-of-flight (TOF), quadrupole, quadrupole ion trap (IT), linear quadrupole ion trap, Fourier transform ion cyclotron resonance (FT-ICR), and orbitrap mass analyzers. Examples of well-known detectors include electron multiplier, Faraday cup, microchannel plate, and Daly detectors.
Mass analyzers segregate ions according to their mass-to-charge ratio (m/z, where m is mass and z is charge). For example, a peptide of molecular weight P with two positive charges will have a net mass of (P+2) due to the ionizing presence of two protons, and will appear on a mass spectrum at m/z=(P+2)/2. Thus, in general, a molecule of molecular weight M with charge Z will appear on a mass spectrum at m/z=(M+Z)/Z.
Mass spectrometry can be combined with liquid chromatography (LC) or gas chromatography (GC) to facilitate detection and identification of compounds residing within a complex mixture. In liquid chromatography-mass spectrometry (LC/MS), the analyte solution is first passed through a high-performance liquid chromatography (HPLC) column, which may separate components by a characteristic such as hydrophobicity, partition coefficient, polarity, bioaffinity, charge, or size using well-known chromatographic techniques such as reversed-phase chromatography, normal phase chromatography, displacement chromatography, partition chromatography, ion exchange chromatography, size exclusion chromatography, or bioaffinity chromatography. The mass spectrometer then generates a mass spectrum for each peak in the HPLC chromatogram. Using LC/MS, a single species of interest can be separated and identified from within complex biological mixtures such as plasma or serum.
LC can also be combined with a tandem mass spectrometer (MS/MS), which is capable of multiple rounds of mass spectrometry for purposes such as protein identification. An MS/MS system can isolate and stabilize an individual ion species appearing in a mass spectrum, which is then fragmented using any one of several well-known techniques, such as collision-induced dissociation (CID), electron capture dissociation (ECD), electron transfer dissociation (ETD), infrared multiphoton dissociation (IRMPD), and blackbody infrared radiative dissociation (BIRD). The fragments are themselves analyzed by MS to generate a fragment mass spectrum, also called a fragmentation pattern. In the case of protein identification, an experimentally derived fragmentation pattern (generated from a sample with an unknown protein or peptide) can be compared with fragmentation patterns that have been predicted from information in protein sequence or nucleotide sequence databases. A high degree of similarity between experimental and predicted fragmentation patterns leads to identification of the unknown protein in the sample.
Other features and advantages of the invention will be apparent from the following Examples. The following are provided for exemplification purposes only and are not intended to limit the scope of the invention described in broad terms above. All references cited in this disclosure are incorporated herein by reference.
EXAMPLESLC/MS analyses were obtained using a Thermo-Scientific ACCELA UHPLC and LTQ ORBITRAP DISCOVERY™ mass spectrometry systems.
For plasma extraction, 100 uL of plasma was precipitated by addition of 200 uL methanol in a 1.5 mL protein LoBind eppendorf tube. After vortexing for 10 seconds, the precipitate was pelleted by centrifugation at 13,000 rpm for 15 minutes at 10° C. using a benchtop centrifuge. The supernatant was transferred to a limited volume glass HPLC vial and analyzed by LC/MS as described in the following examples.
Example 1 MS Analysis of Degradation Kinetics of NT-proBNP in Feline PlasmaDegradation kinetics of whole feline synthetic (fs) NT-proBNP in feline plasma were investigated by adding 1.0 μg fsNT-proBNP to 1 mL of feline plasma prepared as described above. Aliquots of the plasma were analyzed by LC/MS at 0, 4, 24, and 48 hours after addition of the peptide. As shown in
The LC gradient for this example is shown in Table 1, where Solvent C is 0.1% formic acid in water and Solvent D is 0.1% formic acid in acetonitrile.
-
- Column: Acquity UPLC BEH300 C18 1.7 μM 2.1 id×150 mm length
- Guard Column: vanguard BEH C18 1.7 uM
- Injection volume: 25 μL
- Tray temp: 10° C.
- Column oven temp: 45° C.
- MS run time: 60.0 minutes
The mass spec parameters for degradation kinetics are shown in Table 2:
- Number of Scan Events: 1
- Tune Method: 031710 peptide tune
Scan Event Details:
- 1: FTMS+c norm res=30000 o(375.0-2000.0)
- CV=0.0V
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
MS Tune File Values
- Source Type: ESI
- Capillary Temp (° C.): 250.00
- Sheath gas Flow: 24.0
- Aux Gas Flow: 13.0
- Sweep Gas Flow: 0
- ITMS MSn AGC Target: 10000
- FTMS Injection waveforms: off
- FTMS AGC Target: 500000
- Source voltage (kV): 4.50
- Source current (μA): 100.00
- Capillary Voltage (V): 68.28
- Tube Lens (V): 130.00
- Skimmer Offset (V): 0.00
- Multipole RF Amplifier (Vp-p): 550.00
- Multipole 00 offset (V): −1.60
- Lens 0 Voltage (V): −2.70
- Multipole 0 offset (V): −2.70
- Lens 1 Voltage (V): −11.00
- Gate Lens offset (V): −60.00
- Multipole 1 offset (V): −10.5
- Front Lens (V): −5.18
- ITMS MSn microscans: 3
- ITMS MSn Max Ion Time (ms): 100.00
- FTMS full microscans: 1
- FTMS full Max Ion Time (ms): 500.00
The Mass Spec parameters used for determining peptide degradation products are shown in Table 3.
- Number of Scan Events: 6
- Tune Method: 031710 peptide tune
Scan Event Details:
- 1: FTMS+c norm res=30000 o(375.0-2000.0)
- CV=0.0V
- 2: ITMS+c norm Dep MS/MS Most intense ion from (1)
- Activation Type: CID
- Min. Signal Required: 500.0
- Isolation Width: 1.50
- Normalized Coll. Energy: 35.0
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
- 3: ITMS+c norm Dep MS/MS 2nd most intense ion from (1)
- Activation Type: CID
- Min. Signal Required: 500.0
- Isolation Width: 2.00
- Normalized Coll. Energy: 35.0
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
- 4: ITMS+c norm Dep MS/MS 3rd most intense ion from (1)
- Activation Type: CID
- Min. Signal Required: 500.0
- Isolation Width: 2.00
- Normalized Coll. Energy: 35.0
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
- 5: ITMS+c norm Dep MS/MS 4th most intense ion from (1)
- Activation Type: CID
- Min. Signal Required: 500.0
- Isolation Width: 1.50
- Normalized Coll. Energy: 35.0
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
- 6: ITMS+c norm Dep MS/MS 5th most intense ion from (1)
- Activation Type: CID
- Min. Signal Required: 500.0
- Isolation Width: 1.50
- Normalized Coll. Energy: 35.0
- Default Charge State: 2
- Activation Q: 0.250
- Activation Time: 30.000
- CV=0.0V
Data Dependent Settings:
Use separate polarity settings disabled
-
- Parent Mass List: (none)
- Reject Mass List: (none)
- Neutral Loss Mass List: (none)
- Product Mass List: (none)
- Neutral loss in top: 3
- Product in top: 3
- Most intense if no parent masses found not enabled
- Add/subtract mass not enabled
- FT master scan preview mode enabled
- Charge state screening enabled
- Monoisotopic precursor selection enabled
- Non-peptide monoisotopic recognition not enabled
- Charge state rejection enabled
- Unassigned charge states: rejected
- Charge state 1: not rejected
- Charge state 2: not rejected
- Charge state 3: not rejected
- Charge states 4+: not rejected
- Unassigned charge states: rejected
Global Data Dependent Settings:
-
- Use global parent and reject mass lists not enabled
- Exclude parent mass from data dependent selection not enabled
- Exclusion mass width relative to mass
- Exclusion mass width relative to low (ppm): 20.000
- Exclusion mass width relative to high (ppm): 20.000
- Parent mass width relative to mass
- Parent mass width relative to low (ppm): 10.000
- Parent mass width relative to high (ppm): 10.000
- Reject mass width relative to mass
- Reject mass width relative to low (ppm): 20.000
- Reject mass width relative to high (ppm): 20.000
- Zoom/UltraZoom scan mass width by mass
- Zoom/UltraZoom scan mass width low: 5.00
- Zoom/UltraZoom scan mass width high: 5.00
- FT SIM scan mass width low: 5.00
- FT SIM scan mass width high: 5.00
- Neutral Loss candidates processed by decreasing intensity
- Neutral Loss mass width by mass
- Neutral Loss mass width low: 0.50000
- Neutral Loss mass width high: 0.50000
- Product candidates processed by decreasing intensity
- Product mass width by mass
- Product mass width low: 0.50000
- Product mass width high: 0.50000
- MS mass range: 0.00-1000000.00
- MSn mass range by mass
- MSn mass range: 0.00-1000000.00
- Use m/z values as masses not enabled
- Analog UV data dep. not enabled
- Dynamic exclusion enabled
- Repeat Count: 2
- Repeat Duration: 30.00
- Exclusion List Size: 500
- Exclusion Duration: 60.00
- Exclusion mass width relative to mass
- Exclusion mass width relative to low (ppm): 20.000
- Exclusion mass width relative to high (ppm): 20.000
- Expiration: disabled
- Isotopic data dependence not enabled
- Mass Tags data dependence not enabled 4
MS Tune File Values
- Source Type: ESI
- Capillary Temp (° C.): 250.00
- Sheath gas Flow: 24.0
- Aux Gas Flow: 13.0
- Sweep Gas Flow: 0
- ITMS MSn AGC Target: 10000
- FTMS Injection waveforms: off
- FTMS AGC Target: 500000
- Source voltage (kV): 4.50
- Source current (μA): 100.00
- Capillary Voltage (V): 68.28
- Tube Lens (V): 130.00
- Skimmer Offset (V): 0.00
- Multipole RF Amplifier (Vp-p): 550.00
- Multipole 00 offset (V): −1.60
- Lens 0 Voltage (V): −2.70
- Multipole 0 offset (V): −2.70
- Lens 1 Voltage (V): −11.00
- Gate Lens offset (V): −60.00
- Multipole 1 offset (V): −10.5
- Front Lens (V): −5.18
- ITMS MSn microscans: 3
- ITMS MSn Max Ion Time (ms): 100.00
- FTMS full microscans: 1
- FTMS full Max Ion Time (ms): 500.00
To characterize the fsNT-proBNP stable degradation products present after incubation in feline plasma, fsNT-proBNP was added to feline plasma at 1, 5, and 10 μg/mL and incubated at room temperature. At 0, 24, 48, 96, and 192 hours, 100 μL aliquots of the plasma were collected and combined with 200 μL of methanol to form a precipitate. After centrifugation, the supernatant was analyzed for stable peptides by LC/MS as described in Example 1.
The relative abundance of several fragments from the N-terminal, capture, and C-terminal regions were evaluated over time. These data are shown in
To identify stable peptide epitopes, a database containing the amino acid sequence of fsNT-proBNP (SEQ ID NO:1) in FASTA format was created. The RAW file of interest acquired from the LC-MS run was uploaded along with the FASTA database to Proteome Discoverer software (v 1.0 Thermo Scientific) for identification of the stable epitopes using SEQUEST.
The peptides that satisfy the criteria as directed in the Proteome Discover Software were indentified as stable epitopes for a particular time series.
Example 4 Immunoassay for Feline NT-proBNPImmunoassays can be conducted using monoclonal antibodies specific for stable feline NT-proBNP degradation fragments (SEQ ID NOS: 5, 9 and 10) at, for example, 24, 48, 72 and 96 hours. Sheep polyclonal antibodies raised against various fragment of feline NT-proBNP can be coated on a solid phase. Monoclonal antibodies can be raised against raised against any of SEQ ID NOS:5, 9 and 10, and conjugated at either or both the N and C terminus with a protein carrier, for example, (PEG)6-Cys-KLH. The antibodies can be labeled with HRP or another label using standard techniques known in the art. Feline plasma incubated with the solid phase for 1 hour followed by a second incubation with the labeled antibodies allow for the detection of the label on the solid phase when the polyclonal and monoclonal antibodies bind to the same degradation fragment of feline NT-proBNP.
The examples given above are merely illustrative and are not meant to be an exhaustive list of all possible embodiments, applications or modifications of the invention. Thus, various modifications and variations of the described methods and systems of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention which are obvious to those skilled in molecular biology, immunology, chemistry, biochemistry or in the relevant fields are intended to be within the scope of the appended claims.
It is understood that the invention is not limited to the particular methodology, protocols, and reagents, etc., described herein, as these may vary as the skilled artisan will recognize. It is also to be understood that the terminology used herein is used for the purpose of describing particular embodiments only, and is not intended to limit the scope of the invention.
The embodiments of the invention and the various features and advantageous details thereof are explained more fully with reference to the non-limiting embodiments and/or illustrated in the accompanying drawings and detailed in the following description. It should be noted that the features illustrated in the drawings are not necessarily drawn to scale, and features of one embodiment may be employed with other embodiments as the skilled artisan would recognize, even if not explicitly stated herein.
Any numerical values recited herein include all values from the lower value to the upper value in increments of one unit provided that there is a separation of at least two units between any lower value and any higher value. As an example, if it is stated that the concentration of a component or value of a process variable such as, for example, size, angle size, pressure, time and the like, is, for example, from 1 to 90, specifically from 20 to 80, more specifically from 30 to 70, it is intended that values such as 15 to 85, 22 to 68, 43 to 51, 30 to 32, etc. are expressly enumerated in this specification. For values which are less than one, one unit is considered to be 0.0001, 0.001, 0.01 or 0.1 as appropriate. These are only examples of what is specifically intended and all possible combinations of numerical values between the lowest value and the highest value enumerated are to be considered to be expressly stated in this application in a similar manner.
Particular methods, devices, and materials are described, although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the invention. The disclosures of all references and publications cited herein are expressly incorporated by reference in their entireties to the same extent as if each were incorporated by reference individually.
Claims
1. A method for determining the amount of NT-proBNP in a sample from a feline comprising:
- a. obtaining a blood, serum or plasma sample from a feline subject;
- b. analyzing the sample by contacting the sample with a first antibody that binds a polypeptide selected from the group consisting of ASEASAIQELLDGLRDTVSEL (SED ID NO: 5), LGPLQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:9) and LQQGHSPAESWEAQEEPPARVLAPHDNVLR (SEQ ID NO:10);
- c. detecting the amount of binding between the antibody and the polypeptide and the polypeptide, wherein the binding is detectable after at least 96 hours at room temperature
- d. associating the amount of binding to the amount of NT-proBNP in the sample.
2. The method of claim 2, wherein the determining further comprises: contacting a complex formed by the first antibody and the NT-proBNP in the sample with a second antibody specific for feline NT-proBNP, wherein the second antibody is directly or indirectly conjugated to a label; and detecting the amount of the label associated with the complex, wherein the first antibody and the second antibody do not compete for binding to the same epitope on NT-proBNP.
3. The method of claim 2, wherein the second antibody is specific for one of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10.
4. The method of claim 1, further comprising contacting a standard comprising recombinant feline NT-proBNP with the first antibody, detecting the binding of the standard to the first antibody, and comparing the amount of binding of the first antibody to the NT-proBNP in the sample to the amount of binding of the first antibody to the standard.
5. The method of claim 2, further comprising contacting a standard comprising recombinant feline NT-proBNP with the first antibody and the second antibody, and comparing a signal from the label of the second antibody that is bound to the NT-proBNP in the sample to the signal from the label of the second antibody that is bound to the standard.
6. The method of claim 1, wherein the first antibody is a monoclonal antibody raised against a polypeptide selected from a sequence consisting essentially of one of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10.
7. The method of claim 3, wherein the second antibody is monoclonal antibody.
8. The method of claim 1, further comprising analyzing the sample after at least 192 hours at room temperature.
9. The method of claim 1, wherein the first antibody is specific for SEQ ID NO: 5.
10. The method of claim 1, wherein the first antibody is specific for SEQ ID NO:9.
11. The method of claim 1, wherein the first antibody is specific for SEQ ID NO:10.
12. A method for determining the presence or amount of feline NT-proBNP in a sample comprising:
- a. obtaining a blood, serum or plasma sample from a feline;
- b. forming a complex comprising NT-proBNP in the sample, a first antibody that specifically a polypeptide selected from the group consisting of SEQ ID NO:5, SEQ ID NO:9 and SEQ ID NO: 10, and a second antibody that binds to feline NT-proBNP, wherein one of the first antibody and second antibody is bound to solid phase and the other of the first antibody and second antibody is bound to a label, wherein the complex can be formed after more than about 96 hours after obtaining the sample at room temperature;
- c. detecting the presence or amount of the label on the solid phase, thereby determining the presence or amount of feline NT-proBNP in the sample.
13. The method of claim 12, wherein the first antibody is a monoclonal antibody.
14. The method of claim 12, wherein the second antibody is a monoclonal antibody.
15. The method of claim 12, wherein the first antibody is specific for SEQ ID NO: 5.
16. The method of claim 12, wherein the first antibody is specific for SEQ ID NO:9.
17. The method of claim 12, wherein the first antibody is specific for SEQ ID NO:10.
18. The method of claim 12, further comprising forming the complex after at least 192 hours at room temperature.
Type: Application
Filed: Jun 16, 2014
Publication Date: Oct 2, 2014
Inventors: Mahalakshmi Yerramilli (Falmouth, ME), Michael Atkinson (Gorham, ME), Murthy V.S.N. Yerramilli (Falmouth, ME)
Application Number: 14/305,652
International Classification: G01N 33/543 (20060101);
