NEW IMMUNOCYTOKINES FOR THE TREATMENT OF CANCER
The present invention relates to new immunocytokines which are useful for the treatment of cancer. These fusion proteins comprise (i) an antibody or antigen-binding fragment thereof fused to (ii) a cleavable peptide linker, and (iii) cytokine, or functional fragments thereof. Methods of treatment using these immunocytokines are also disclosed.
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The invention relates to a new immunocytokines and its use for treating cancer.
While therapeutic success has been achieved for various types of haematological malignancies and some solid tumours (e.g., metastatic testicular cancer), the majority of disseminated forms of solid cancer remain incurable. The therapeutic efficacy of conventional cancer therapeutics is often limited by the inability of small organic molecules to accumulate in sufficient amounts at the site of disease (see e.g., van der Veldt A A, et al. Clin Cancer Res. 19: 4163-4173, 2013).
New strategies are now developed that preferentially activate relevant immune subsets, such as T effectors, monocytes and NK cells, while limiting the activation of regulatory T cells. However, substantial side effects and unfavourable pharmacokinetic properties have been a major drawback hampering the administration of therapeutically relevant doses. Notably, cytokine immunotherapy often results in the development of severe dose-limiting side effects (Pachella et al., Pract Oncol 6:212-221, 2015). Two properties shared by most cytokines are thought to play a crucial role in the development of treatment-associated adverse effects. Firstly, cytokines are pleiotropic, meaning they are able to influence more than a single cell type. Furthermore, cytokines have a short serum half-life and, thus, need to be administered at high doses to achieve their therapeutic effects. While effectively enhancing therapeutic efficacy, high doses exacerbate pleiotropic activities that manifest as adverse effects in patients.
One approach aimed at increasing efficacy attempts to deliver cytokines to tumour sites by genetically fusing cytokines to antibodies, or antibody components such as a single chain variable fragment (scFv). Such fusion proteins, designated immunocytokines, combine the binding specificity of an antibody with the potency of cytokines such as, for example, IL-2 (Sondel ∈t Gillies, Antibodies 1: 149-171, 2012; Skrombolas ∈t Frelinger, Expert Rev Clin Immunol. 10(2): 207-217, 2014; Kiefer ∈t Neri, Immunol Rev. 270(1): 178-192, 2016). Delivery of the cytokine to the tumour site is improved by the use of immunocytokines, notably for cancers with easily accessible tumours. In another instance, the immunocytokine comprises a cytokine (IL-12) joined to a specific inhibitory anti-IL-12 scFv by a MMP9-cleavage site (Skrombolas et al., J Interferon Cytokine Res. 39(4): 233-245, 2019). However, the treatment of disseminated, systemic diseases might benefit from immunocytokines that have been optimised for tumour targeting and activation at the tumour site (Sondel ∈t Gillies, Antibodies 1: 149-171, 2012). In particular, binding of the antibody outside of the tumour may result in unwanted cytokine activity and potential side effects. This problem is all the more crucial as certain payloads have been reported to completely abrogate the tumour-targeting potential of the parental antibody in mouse models of cancer (see e.g., Hess, Doctoral Thesis, ETH Zürich, 2015).
Thus, there is still a need for an immunocytokine which can deliver and activate the cytokine safely and efficiently to the tumour site.
It was surprisingly found that the specific combination of an antibody fused to a cytokine moiety which can be selectively released upon cleavage of a cleavable peptide linker, provides for a new and therapeutically effective fusion protein.
The present invention relates to an “immunocytokine”, i.e., a fusion between an antibody or a fragment or a derivative thereof and a cytokine. The antibody moiety in the present immunocytokine targets the tumour where the cytokine is released to exert its action. This confers greater specificity to the fusion protein, i.e. it generates fewer side effects than immunocytokines of the prior art which merely rely on localised proteolysis for targeting cytokine activity to the tumour (Skrombolas et al., 2019).
Whereas other immunocytokines of the prior art either did not contain any linker or contained a merely structural linker (i.e., a linker without any specific biological activity) between the antibody and the cytokine, the present fusion protein comprises a peptide linker which can be cleaved between the two moieties, allowing better control of the therapeutic activity of the molecule. Indeed, the inventors have found that the fusion protein is surprisingly inactive in the blood but is activated upon reaching the tumour site. The cleavable peptide linker is preferentially cleaved in the tumour microenvironment, thus releasing the cytokine. Targeted delivery of the cytokine thus potentiates its anti-tumour activity, whilst reducing the risks of cytokine-associated toxicity.
In a first aspect, the invention relates to a fusion protein comprising an antibody, or antigen-binding protein thereof, a cleavable peptide linker, and a cytokine or a functional fragment thereof.
A “fusion protein” refers to a chimeric protein encoding two or more separate protein sequences that are recombinantly expressed as a single moiety. This term is meant to encompass all conjugates, wherein said antibody, or antigen-binding protein thereof is somehow bound to the cleavable peptide linker and the cytokine or functional fragment thereof, by, e.g. covalent and/or non-covalent, e.g. ionic bonds.
The term encompasses all binding arrangements. Preferred arrangements include antibody-linker-cytokine and cytokine-linker-antibody.
Antibodies
An “antibody” as used herein refers to an immunoglobulin (Ig) molecule capable of specific binding to a target, the “antigen”, such as a carbohydrate, polynucleotide, lipid, polypeptide, etc., through at least one antigen recognition site, located in the variable region of the immunoglobulin molecule. The antibody or antigen-binding protein thereof of the present fusion protein mediates the targeted delivery of immunocytokines into disease environments and/or to specific cell subsets. Preferred target antigens are those that are overexpressed in diseased tissues, while remaining at low levels elsewhere. Such antigens are well-known to the skilled person, as-they have been the subject of numerous studies over the years. For example, the antibody moiety of the present immunocytokine may target antigens overexpressed on the surface of malignant cells (e.g., epithelial cell adhesion molecule, EGFR, IGF-1R, GD2 disialoganglioside, HER2/neu, CD20 and CD30), as well as targeting of neoangiogenic antigens found in tumours and chronic inflammation sites (e.g., fibronectin, splice variants EDA/EDB and A1 domain of tenascin C).
As used herein, the term “antibody” encompasses not only intact polyclonal or monoclonal antibodies, but also any antigen binding fragment (i.e., “antigen-binding fragment”) or single chain thereof, fusion proteins comprising an antibody, and any other modified configuration of the immunoglobulin molecule that comprises an antigen recognition site including, for example without limitation, scFv, single domain antibodies {e.g., shark and camelid antibodies), maxibodies, minibodies, intrabodies, diabodies, triabodies, tetrabodies, v-NAR and bis-scFv. As used herein, the term “antibody” encompasses both full-length antibodies and their antigen-binding fragments, as well as any derivative thereof. Preferably, the antibody according to the invention, or its derived compounds or antigen-binding fragments, is a monoclonal antibody.
A “monoclonal antibody”, as used herein, means an antibody arising from a nearly homogeneous antibody population. More particularly, the individual antibodies of a population are identical except for a few possible naturally-occurring mutations which can be found in minimal proportions. In other words, a monoclonal antibody consists of a homogeneous antibody arising from the growth of a single cell clone (for example a hybridoma, a eukaryotic host cell transfected with a DNA molecule coding for the homogeneous antibody, a prokaryotic host cell transfected with a DNA molecule coding for the homogeneous antibody, etc.) and is generally characterized by heavy chains of one and only one class and subclass, and light chains of only one type. Monoclonal antibodies are highly specific and are directed against a single antigen. In addition, in contrast with preparations of polyclonal antibodies which typically include various antibodies directed against various determinants, or epitopes, each monoclonal antibody is directed against a single epitope of the antigen. Since these antibodies are directed against a single epitope, they are highly specific.
An “epitope” is the site on the antigen to which binds the antibody. It can be formed by contiguous residues or by non-contiguous residues brought into close proximity by the folding of an antigenic protein. Epitopes formed by contiguous amino acids are typically retained on exposure to denaturing solvents, whereas epitopes formed by non-contiguous amino acids are typically lost under said exposure.
The generation of the antibody reactive with a specific antigen can be realised by any method known by the man skilled in the art, such as for example, fusion of a myeloma cell with spleen cells from immunized mice or other species compatible with the selected myeloma cells (Kohler ∈t Milstein, Nature, 256:495-497, 1975). The immunized animals could include transgenic mice with human immunoglobulin loci which then directly produce human antibodies. Alternatively, an antibody can be generated by recombinant methods such as selection of libraries of recombinant antibodies in phage or similar vectors. In general, for the preparation of monoclonal antibodies or their functional fragments, especially of murine origin, it is possible to refer to techniques which are described in particular in the manual “Antibodies” (Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor N.Y., pp. 726, 1988) or to the technique of preparation from hybridomas described by Kohler and Milstein (Nature, 256:495-497, 1975).
An antibody includes an antibody of any class, such as IgG, IgA, or IgM (or subclass thereof), and the antibody need not be of any particular class. Depending on the antibody amino acid sequence of the constant region of its heavy chains, immunoglobulins can be assigned to different classes.
A typical IgG antibody is composed of two identical heavy chains and two identical light chains that are joined by disulphide bonds. Each heavy and light chain contains a constant region and a variable region. Each variable region contains three segments called “complementarity-determining regions” (“CDRs”) or “hypervariable regions”, which are primarily responsible for binding an epitope of an antigen. They are usually referred to as CDR1, CDR2, and CDR3, numbered sequentially from the N-terminus. The more highly conserved portions of the variable regions are called the “framework regions”.
There are three heavy-chain CDRs and 3 light-chain CDRs. The term “CDR” or “CDRs” is used here in order to indicate, according to the case, one of these regions or several, or even the whole, of these regions which contain the majority of the amino acid residues responsible for the binding by affinity of the antibody for the antigen or the epitope which it recognises.
As used herein, “VH” or “VH” refers to the variable region of an immunoglobulin heavy chain of an antibody, including the heavy chain of an Fv, scFv, dsFv, Fab, Fab′, or F(ab′)2 fragment. Reference to “VL” or “VL” refers to the variable region of the immunoglobulin light chain of an antibody, including the light chain of an Fv, scFv, dsFv, Fab, Fab′, or F(ab′)2 fragment.
Antibody constant domains are not involved directly in binding an antibody to an antigen, but exhibit various effector functions. The heavy chain constant regions that correspond to the different classes of immunoglobulins are called α, δ, ε, γ, and μ, respectively. Depending on the amino acid sequence of the constant region of their heavy chains, antibodies or immunoglobulins can be assigned to different classes, i.e., IgA, IgD, IgE, IgG, and IgM, and several of these may be further divided into subclasses (isotypes), e.g., IgG1, IgG2, IgG3, and IgG4; IgA1 and IgA2 (see, W. E. Paul, ed., 1993, Fundamental Immunology, Raven Press, New York, N.Y.).
Papain digestion of antibodies produces two identical antigen binding fragments, called Fab fragments, each with a single antigen binding site, and a residual “Fc” fragment. The crystal structure of the human IgG Fc domain has been determined (Deisenhofer, Biochemistry, 20, 2361-2370, 1981). As used in the specification and claims, “immunoglobulin Fc domain or Fc” means the carboxyl-terminal portion of the immunoglobulin heavy chain constant region. A “native sequence Fc domain”, as used herein, comprises an amino acid sequence identical to the amino acid sequence of a Fc domain found in nature. Native sequence human Fc domains include a native sequence human IgG1 Fc domain (non-A and A allotypes); native sequence human IgG2 Fc domain; native sequence human IgG3 Fc domain; and native sequence human IgG4 Fc domain as well as naturally occurring variants thereof.
Although the boundaries of the Fc domain of an immunoglobulin heavy chain might vary, the human IgG heavy chain Fc domain is usually defined to stretch from an amino acid residue at position Cys226 or Pro230 in the hinge region, to the carboxyl-terminus thereof containing the CH2 and CH3 domain of the heavy chain. Throughout the present specification and claims, the numbering of the residues in an immunoglobulin heavy chain is that of the EU index as in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md. (1991). The “EU index as in Kabat” refers to the residue numbering of the human IgG1 EU antibody.
The term “hinge region” is generally defined as stretching from Glu216 to Pro230 of human IgG1 (Burton, Mol Immunol, 22: 161-206, 1985). Hinge regions of other IgG isotypes may be aligned with the IgG1 sequence by placing the first and last cysteine residues forming inter-heavy chain S—S bonds in the same positions. The “CH2 domain” of a human IgG Fc portion (also referred to as “Cy2” domain) usually extends from about amino acid 231 to about amino acid 340. The CH2 domain is unique in that it is not closely paired with another domain. Rather, two N-linked branched carbohydrate chains are interposed between the two CH2 domains of an intact native IgG molecule. It has been speculated that the carbohydrate may provide a substitute for the domain-domain pairing and help stabilize the CH2 domain (Burton, Mol Immunol, 22: 161-206, 1985). The “CH3 domain” comprises the stretch of residues C-terminal to a CH2 domain in an Fc portion (i.e., from about amino acid residue 341 to about amino acid residue 447 of an IgG).
The Fc domains are central in determining the biological functions of the immunoglobulin and these biological functions are termed “effector functions”. These Fc domain-mediated activities are mediated via immunological effector cells, such as killer cells, natural killer cells, and activated macrophages, or various complement components. These effector functions involve activation of receptors on the surface of said effector cells, through the binding of the Fc domain of an antibody to the said receptor or to complement component(s). The antibody-dependent cellular cytotoxicity (ADCC) and complement-dependent cytotoxicity (CDC) activities involve the binding of the Fc domain to Fc-receptors such as FcγRI, FcγRII, FcγRIII of the effector cells or complement components such as C1q. Of the various human immunoglobulin classes, human IgG1l and IgG3 mediate ADCC more effectively than IgG2 and IgG4.
The antibodies of the invention also comprise chimeric or humanised antibodies.
A chimeric antibody is one containing a natural variable region (light chain and heavy chain) derived from an antibody of a given species in combination with constant regions of the light chain and the heavy chain of an antibody of a species heterologous to said given species.
The antibodies, or chimeric fragments of same, can be prepared by using the techniques of recombinant genetics. For example, the chimeric antibody could be produced by cloning recombinant DNA containing a promoter and a sequence coding for the variable region of a nonhuman monoclonal antibody of the invention, notably murine, and a sequence coding for the human antibody constant region. A chimeric antibody according to the invention coded by one such recombinant gene could be, for example, a mouse-human chimera, the specificity of this antibody being determined by the variable region derived from the murine DNA and its isotype determined by the constant region derived from human DNA. It will be appreciated that in this case, the Fc domain of the chimeric antibody is of human origin. Refer to Verhoeyn et al. (BioEssays, 8:74, 1988) for methods for preparing chimeric antibodies.
In addition, the invention also relates to humanised antibodies arising from the murine antibodies described above. “Humanised antibody” refers herein to an antibody that contains CDR regions derived from an antibody of nonhuman origin, the other parts of the antibody molecule being derived from one (or several) human antibodies. In addition, some of the skeleton segment residues (called FR) can be modified to preserve binding affinity (Jones et al., Nature, 321:522-525, 1986; Verhoeyen et al., Science, 239:1534-1536, 1988; Riechmann et al., Nature, 332:323-327, 1988). The Fc domain of a humanised antibody will be of human origin, as in chimeric antibodies.
The humanised antibodies of the invention or fragments of same can be prepared by techniques known to a person skilled in the art (such as, for example, those described in the documents Singer et al., J. Immun., 150:2844-2857, 1992; Mountain et al., Biotechnol. Genet. Eng. Rev., 10:1-142, 1992; and Bebbington et al., Bio/Technology, 10: 169-175, 1992). Such humanised antibodies are preferred for their use in methods involving in vitro diagnoses or preventive and/or therapeutic treatment in vivo. Other humanisation techniques, also known to a person skilled in the art, such as, for example, the “CDR grafting” technique described by PDL in patents EP 0 451 261, EP 0 682 040, EP 0 939 127, EP 0 566 647 or U.S. Pat. Nos. 5,530,101, 6,180,370, 5,585,089 and 5,693,761. U.S. Pat. No. 5,639,641 or 6,054,297, 5,886,152 and 5,877,293 can also be cited.
Although it is possible to use antibody fragments in the present immunocytokines, it is preferred to use full-length, bivalent antibodies. A monovalent antibody such as a Fab or a scFv has only a single binding site for an antigen (as distinct from natural ‘bivalent’ antibodies), i.e., is composed of a single antigen-binding arm. As known to the skilled person, the greater an immunoglobulin's valency (number of antigen binding sites), the greater the amount of antigen it can bind. There is a significant affinity change between monovalent and bivalent bindings with a 1,500-fold change in Kd values. Bivalent antibodies can thus be used at a lower dose to attain similar therapeutic efficiency as monovalent Fab or scFv fragments, thus limiting the risks of secondary effects.
Preferably, the antibody which can be used in the immunocytokines described herein is an antibody which does not bind specifically the cytokine moiety of said immunocytokine. For example, if the cytokine is IL-12, the antibody according to this embodiment is not an antibody which binds IL-12.
In another embodiment the antibody used in the present immunocytokine is an antibody which binds specifically a tumour-associated antigens (TAA) or a tumour-specific antigens (TSA). As used herein, a “tumour-specific antigen” is a protein or other molecule that is found on cancer cells whilst a “tumour-specific antigen” is a protein or other molecule that is found on cancer cells and not on normal cells.
Tumour-specific antigens are known in the art Tumour antigens can be classified in a variety of ways. Tumour antigens include antigens encoded by genes that have undergone chromosomal alteration. Many of these antigens are found in lymphoma and leukaemia. Even within this classification, antigens can be characterized as those that involve activation of quiescent genes. These include BCL-1 and IgH (Mantel cell lymphoma), BCL-2 and IgH (Follicular lymphoma), BCL-6 (Diffuse large B-cell lymphoma), TAL-1 and TCR delta or SIL (T-cell acute lymphoblastic leukaemia), c-MYC and IgH or IgL (Burkitt lymphoma), MUN/IRF4 and IgH (Myeloma), PAX-5 (BSAP) (Immunocytoma).
Other tumour antigens that involve chromosomal alteration and thereby create a novel fusion gene and/or protein include RARoa, PML, PLZF, NPMor NuM4 (Acute promyelocytic leukaemia), BCR and ABL (Chronic myeloid/acute lymphoblastic leukaemia), MLL (HRX) (Acute leukaemia), E2A and PBX or HLF (B-cell acute lymphoblastic leukaemia), NPM, ALK (Anaplastic large cell leukaemia), and NPM, MLF-1 (Myelodysplastic syndrome/acute myeloid leukaemia).
Other tumour antigens are specific to a tissue or cell lineage. These include cell surface proteins such as CD20, CD22 (Non-Hodgkin's lymphoma, B-cell lymphoma, Chronic lymphocytic leukaemia (CLL)), CD52 (B-cell CLL), CD33 (Acute myelogenous leukaemia (AML)), CD 10 (gp100) (Common (pre-B) acute lymphocytic leukaemia and malignant melanoma), CD3/T-cell receptor (TCR) (T-cell lymphoma and leukaemia), CD79/B-cell receptor (BCR) (B-cell lymphoma and leukaemia), CD26 (Epithelial and lymphoid malignancies), Human leukocyte antigen (HLA)-DR, HLA-DP, and HLA-DQ (Lymphoid malignancies), RCAS1 (Gynaecological carcinomas, biliary adenocarcinomas and ductal adenocarcinomas of the pancreas), and Prostate specific membrane antigen (Prostate cancer).
Tissue- or lineage-specific tumour antigens also include epidermal growth factor receptors (high expression) such as EGFR (HER1 or erbB1) and EGFRvIII (Brain, lung, breast, prostate and stomach cancer), erbB2 (HER2 or HER2/neu) (Breast cancer and gastric cancer), erbB3 (HER3) (Adenocarcinoma), and erbB4 (HER4) (Breast cancer).
Tissue- or lineage-specific tumour antigens also include cell-associated proteins such as Tyrosinase, Melan-A/MART-1, tyrosinase related protein (TRP)-1/gp75 (Malignant melanoma), Polymorphic epithelial mucin (PEM) (Breast tumours), and Human epithelial mucin (MUC1) (Breast, ovarian, colon and lung cancers).
Tissue- or lineage-specific tumour antigens also include secreted proteins such as Monoclonal immunoglobulin (Multiple myeloma and plasmacytoma), Immunoglobulin light chains (Multiple Myeloma), alpha-fetoprotein (Liver carcinoma), Kallikreins 6 and 10 (Ovarian cancer), Gastrin-releasing peptide/bombesin (Lung carcinoma), and Prostate specific antigen (Prostate cancer).
Still other tumour antigens are cancer testis (CT) antigens that are expressed in some normal tissues such as testis and in some cases placenta. Their expression is common in tumours of diverse lineages and as a group the antigens form targets for immunotherapy. Examples of tumour expression of CT antigens include MAGE-A1, -A3, -A6, -A12, BAGE, GAGE, HAGE, LAGE-1, NY-ESO-1, RAGE, SSX-1, -2, -3, -4, -5, -6, -7, -8, -9, HOM-TES-14/SCP-1, HOM-TES-85 and PRAME. Still other examples of CT antigens and the cancers in which they are expressed include SSX-2, and -4 (Neuroblastoma), SSX-2 (HOM-MEL-40), MAGE, GAGE, BAGE and PRAME (Malignant melanoma), HOM-TES-14/SCP-1 (Meningioma), SSX-4 (Oligodendroglioma), HOM-TES-14/SCP-1, MAGE-3 and SSX-4 (Astrocytoma), SSX member (Head and neck cancer, ovarian cancer, lymphoid tumours, colorectal cancer and breast cancer), RAGE-1, -2, -4, GAGE-1-2, -3, -4, -5, -6, -7 and -8 (Head and neck squamous cell carcinoma (HNSCC)), HOM-TES14/SCP-1, PRAME, SSX-1 and CT-7 (Non-Hodgkin's lymphoma), and PRAME (Acute lymphoblastic leukaemia (ALL), acute myelogenous leukaemia (AML) and chronic lymphocytic leukaemia (CLL)).
Other tumour antigens are not specific to a particular tissue or cell lineage. These include members of the carcinoembryonic antigen (CEA) family: CD66a, CD66b, CD66c, CD66d and CD66e. These antigens can be expressed in many different malignant tumours and can be targeted by immunotherapy.
Still other tumour antigens are viral proteins and these include Human papilloma virus protein (cervical cancer), and EBV-encoded nuclear antigen (EBNA)-1 (lymphomas of the neck and oral cancer).
Still other tumour antigens are mutated or aberrantly expressed molecules such as but not limited to CDK4 and beta-catenin (melanoma).
In some embodiments, the antigen is a tumour antigen. The tumour antigen may be selected from the group consisting of MART-1/Melan-A, gp100, adenosine deaminase-binding protein (ADAbp), FAP, cyclophilin b, colorectal associated antigen (CRC)-C017-1A/GA733, carcinoembryonic antigen (CEA), CAP-1, CAP-2, etv6, AML1, prostate specific antigen (PSA), PSA-1, PSA-2, PSA-3, prostate-specific membrane antigen (PSMA), T-cell receptor/CD3-zeta chain, and CD20. The tumour antigen may also be selected from the group consisting of MAGE-A1, MAGE-A2, MAGE-A3, MAGE-A4, MAGE-A5, MAGE-A6, MAGE-A7, MAGE-A8, MAGE-A9, MAGE-A10, MAGE-A11, MAGE-A12, MAGE-Xp2 (MAGE-B2), MAGE-Xp3 (MAGE-B3), MAGE-Xp4 (MAGE-B4), MAGE-C1, MAGE-C2, MAGE-C3, MAGE-C4, MAGE-C5). In still another embodiment, the tumour antigen is selected from the group consisting of GAGE-1, GAGE-2, GAGE-3, GAGE-4, GAGE-5, GAGE-6, GAGE-7, GAGE-8, GAGE-9. And in yet a further embodiment, the tumour antigen is selected from the group consisting of BAGE, RAGE, LAGE-1, NAG, GnT-V, MUM-1, CDK4, tyrosinase, p53, MUC family, HER2/neu, p21 ras, RCAS 1, α-fetoprotein, E-cadherin, α-catenin, β-catenin, .gamma.-catenin, p120ctn, gp100Pmel117, PRAME, NY-ESO-1, cdc27, adenomatous polyposis coli protein (APC), fodrin, Connexin 37, Ig-idiotype, p15, gp75, GM2 ganglioside, GD2 ganglioside, human papilloma virus proteins, Smad family of tumour antigens, Imp-1, P1A, EBV-encoded nuclear antigen (EBNA)-1, brain glycogen phosphorylase, SSX-1, SSX-2 (HOM-MEL-40), SSX-1, SSX-4, SSX-5, SCP-1 and CT-7, and c-erbB-2.
Cancer or tumour antigens can also be classified according to the cancer or tumour they are associated with (i.e., expressed by). Cancers or tumours associated with tumour antigens include acute lymphoblastic leukaemia (etv6; am11; cyclophilin b), B cell lymphoma (Ig-idiotype); Burkitt's (Non-Hodgkin's) lymphoma (CD20); glioma (E-cadherin; α-catenin; β-catenin; .gamma.-catenin; pi20ctn), bladder cancer (p21ras), biliary cancer (p21ras), breast cancer (MUC family; HER2/neu; c-erbB-2), cervical carcinoma (p53; p21ras), colon carcinoma (p21ras; HER2/neu; c-erbB-2; MUC family), colorectal cancer (Colorectal associated antigen (CRC)-0017-1A/GA733; APC), choriocarcinoma (CEA), epithelial cell-cancer (cyclophilin b), gastric cancer (HER2/neu; c-erbB-2; ga733 glycoprotein), hepatocellular cancer (α-fetoprotein), Hodgkin's lymphoma (lmp-1; EBNA-1), lung cancer (CEA; MAGE-3; NY-ESO-1), lymphoid cell-derived leukaemia (cyclophilin b), melanoma (p15 protein, gp75, oncofoetal antigen, GM2 and GD2 gangliosides), myeloma (MUC family; p21 ras), non-small cell lung carcinoma (HER2/neu; c-erbB-2), nasopharyngeal cancer (lmp-1; EBNA-1), ovarian cancer (MUC family; HER2/neu; c-erbB-2), prostate cancer (Prostate Specific Antigen (PSA) and its immunogenic epitopes PSA-1, PSA-2, and PSA-3; PSMA; HER2/neu; c-erbB-2), pancreatic cancer (p21ras; MUC family; HER2/neu; c-erbB-2; ga733 glycoprotein), renal (HER2/neu; c-erbB-2), squamous cell cancers of cervix and oesophagus (viral products such as human papilloma virus proteins and non-infectious particles), testicular cancer (NY-ESO-1), T cell leukaemia (HTLV-1 epitopes), and melanoma (Melan-A/MART-1; cdc27; MAGE-3; p21ras; gp100Pme117). More preferably, the antibody of the present immunocytokine is an antibody which does not bind specifically the cytokine moiety of said immunocytokine, but binds specifically a tumour-associated antigens (TAA) or a tumour-specific antigens (TSA).
Examples of antibodies which can be used in the present invention include: Alemtuzumab (CD52), Alirocumab (PCSK9), Arcitumomab (Human CEA (carcinoembryonic antigen)), Atezolizumab (PD-L1), Avelumab (PD-L1), Basiliximab (CD25 (a chain of IL2 receptor)), Belimumab (BLyS), Bevacizumab (CD19), Bevacizumab (VEGF), Brodalumab (IL-17RA), Capromab (Tumour surface antigen PSMA), Catumaxomab (EpCAM and CD3), Catumaxomab (EpCAM), Certolizumab pegol (TNFa), Cetuximab (EGFR), Daratumumab (CD38), Dinutuximab (GD2), Dupilumab (IL-4Ra), Durvalumab (PD-L1), Efalizumab (CD11a), Elotuzumab (SLAMF7), Evolocumab (LDL-C/PCSK9), Fanolesomab (CD15), Golimumab (TNFa), Ibritumomab tiuxetan (CD20), Infliximab (TNFα), Ipilimumab (CTLA-4), Necitumumab (EGFR), Necitumumab (CD25 (a chain of IL2 receptor)), Nivolumab (PD-1), Nofetumomab (Carcinoma-associated antigen), Obinutuzumab (CD20), Ocrelizumab (CD20), Ofatumumab (CD20), Olaratumab (PDGFR-α), Panitumumab (EGFR), Pembrolizumab (PD-1), Pertuzumab (HER2), Ramucirumab (VEGF), Ranibizumab (VEGF-A), Rituximab (CD20), Siltuximab (cCLB8), Tocilizumab (IL-6 receptor), Trastuzumab (HER-2), Vedolizumab (Integrin-α4B7), Votumumab (Cytokeratin tumour-associated antigen).
Cleavable Peptide Linkers
A “cleavable peptide linker” as used herein refers to a polyvalent linker covalently bonded to an antibody, or an antigen-binding fragment thereof, and covalently bonded to a cytokine, or fragment thereof, which is enzymatically cleavable (e.g. at a cleavage site). According to the invention, upon hydrolysis (proteolytic cleavage) of the cleavable peptide linker, the cytokine moiety, preferably IL-15, is released, enabling it to exert its therapeutic activity. In preferred embodiments the cleavable peptide linker is recombinantly expressed as part of the immunocytokine. In other embodiments, the cleavable peptide linker is a linker formed by reacting a functional (reactive) group attached to the linker with an antibody, or an antigen-binding fragment thereof using, for example, conjugate chemistry. In yet other embodiments, the cleavable peptide linker is a linker formed by reacting a functional (reactive) group attached to the linker with a cytokine, or fragment thereof, using, for example, conjugate chemistry. In a preferred embodiment, the cleavable peptide linker connects the cytokine, or fragment thereof, to the heavy chain of the antibody, or an antigen-binding fragment thereof. In another embodiment, the cleavable peptide linker connects the cytokine, or fragment thereof, to the light chain of the antibody, or an antigen-binding fragment thereof. The cleavable peptide linker may connect the cytokine, or fragment thereof, to the N-terminus of one of the heavy and light chains of the antibody, or an antigen-binding fragment thereof. It also possible that the cleavable peptide linker connects the cytokine, or fragment thereof, to the C-terminus of the heavy and light chains of the antibody, or an antigen-binding fragment thereof. Most preferably, the cleavable peptide linker connects the cytokine, or fragment thereof, to the N-terminus or C-terminus of the heavy chain of the antibody, or an antigen-binding fragment thereof.
The cleavable peptide linker provided herein may include a protease cleavage site.
A “cleavage site” as used herein, refers to a recognisable site for cleavage of a portion of a linker (e.g. cleavable peptide linker as described hereinabove) present in an immunocytokine described herein. Thus, a cleavage site may be found in the sequence of a cleavable peptide linker as described herein, including embodiments thereof. In embodiments, the cleavage site is an amino acid sequence that is recognised and cleaved by a cleaving agent (e.g. a peptidyl sequence). Exemplary cleaving agents include proteins, enzymes, DNAzymes, RNAzymes, metals, acids, and bases. Exemplary cleavage sites are defined herein (see
A “protease cleavage site” as used herein is a cleavage site which is recognised and specifically cleaved by a protease. According to a preferred embodiment, the protease cleavage site is a tumour-associated protease cleavage site. A “tumour-associated protease cleavage site” as used herein refers to an amino acid sequence recognised by a protease, whose expression is specific for a tumour cell or tumour cell environment thereof or mainly expressed in the tumour cell or tumour environment compared to healthy tissues or is only/mainly active in the tumour cell or tumour environment. In embodiments, the protease cleavage site is a matrix metalloprotease (MMP) cleavage site, a prostate specific antigen (PSA) protease cleavage site, a membrane type serine protease 1 (MT-SP1) protease cleavage site, a uPA urokinase plasminogen activator cleavage site, or a legumain protease cleavage site. In some embodiments, the matrix metalloprotease (MMP) cleavage site is a MMP 9 cleavage site, a MMP 13 cleavage site, or a MMP 2 cleavage site. Protease cleavage sites may be designated by a specific amino acid sequence but may also encompass any variation of this canonical amino acid sequence which is still recognised and cleaved by the protease of interest.
Preferably, the cleavable peptide linker is a matrix metalloprotease (MMP) cleavage site. More preferably, the cleavable peptide linker comprises a MMP 9 cleavage site or a MMP 2 cleavage site. Examples of MMP cleavage sites include GPLGIAGQ, GPLGLWAQ, GPLGMLSQ, PLGLAG, and PVGLIG.
In another preferred embodiment, the cleavable peptide linker is a urokinase plasminogen activator (uPA) cleavage site. Examples of uPA cleavage sites include SGRS, SGRSA, and PSSSRRRVN.
The term “MMP 2” or “MMP 2 protease” as used herein refers to the matrix metalloproteinase 2 (MMP 2). MMP-2 is the protein identified by the NCBI sequence reference GI: 189217853. The term “MMP-9” or “MMP9 protease” as used herein refers to the matrix metalloproteinase 9 (MMP-9). MMP9 is the protein identified by the NCBI sequence reference GI: 74272287. The term “MMP 13” or “MMP 13 protease” as used herein refers the matrix metalloproteinase 13 (MMP 13). MMP 13 is the protein identified by the NCBI sequence reference GL4505209. The term “PSA” or “PSA protease” as used herein refers to the prostate-specific antigen (PSA), also known as gamma seminoprotein or kallikrein-3. PSA is the protein identified by the NCBI sequence reference GL71834853. The term “PSMA” or “PSMA protease” as used herein refers to the prostate-specific membrane antigen (PSMA), also known as glutamate carboxypeptidase II (GCPII), N-acetyl-L-aspartyl-L-glutamate peptidase I (NAALADase I) or NAAG peptidase. PSMA is the protein identified by the NCBI sequence reference GL62548858. The term “fibroblast associated protein” as used herein refers to the fibroblast associated protein. Fibroblast associated protein is the protein as identified by the NCBI sequence reference GL 1888316. The term “MT-SPL” or “MT-SPL protease” as used herein refers to the membrane type serine protease 1 (MT-SPL). MT-SPL is the protein identified by the NCBI sequence reference GI: 1 1415040. The term “legumain” or “legumain protease” as used herein refers to the legumain protein. Legumain is the protein identified by the NCBI sequence reference GL2842759. The term uPA as used herein refers to the urokinase-type plasminogen activator identified by the NCBI sequence reference Gene ID: 5328.
In some embodiment, the cleavable peptide linker comprises at Least 2, at Least 3, at Least 4, at Least 5, at Least 6, at Least 7, at Least 8, at Least 9, at Least 10, at Last 11, at Least 12, or at Least 13 amino acids. In other embodiments, cleavable peptide Linkers are 5-mers (i.e. peptides 5 amino acids in Length), 6-mers (i.e. peptides 6 amino acids in Length), 7-mers (i.e. peptides 7 amino acids in Length), 8-mers (i.e. peptides 8 amino acids in Length), 9-mers (i.e. peptides 9 amino acids in Length), 10-mers (i.e. peptides 10 amino acids in Length), 11-mers (i.e. peptides 11 amino acids in Length), 12-mers (i.e. peptides 12 amino acids in Length), or 13-mers (i.e. peptides 13 amino acids in Length).
Most preferably, said the sequence of said cleavage peptide linker is selected from the group consisting of: GPLGIAGQ, GPLGLWAQ, GPLGMLSQ, PLGLAG, PVGLIG, SGRS, SGRSA, and PSSSRRRVN.
Cytokines
The term “cytokine” as used herein refers to a member of a family of small secreted regulatory proteins which have an effect on the immune system. Cytokines are involved in cell-to-cell communication and regulate many cellular functions, such as cell survival and growth, as well as induction of the expression of many genes. Secretion of cytokines thus enables the rapid propagation of immune signalling in a multifaceted and efficient manner. Cytokines regulate the nature, intensity and duration of the immune response by exerting a variety of effects on Lymphocytes and/or other cells. Indeed, cytokines are usually classified into pro- and anti-inflammatory cytokines. Some cytokines are also capable of mobilising the immune system to fight cancer (see e.g., Floros ∈t Tarhini, Semin Oncol. 42(4): 539-548, 2015). Cytokines can be produced by many cell types, including immune and non-immune cells. Examples of cytokines include interleukins, lymphokines, monokines, interferons, colony stimulating factors, and chemokines, inter alia. A “cytokine” as used herein may be any one of IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-11, IL-12, IL-13, IL-15, IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22, IL-23, IL-24, IL-26, IL-28, IL-29, IL-33, IL-36, IL37, IL-38, IFN-α (including IFN-α1/13, IFN-α2, IFN-α4, IFN-α5, IFN-α6, IFN-α7, IFN-α8, IFN-α10, IFN-α14, IFN-α16, IFN-α17, and IFN-α21), IFN-β, IFN-γ, IFN-λ, TNF-α, TNF-β, TGF-β1, M-CSF, G-CSF, GM-CSF, and CXL10. According to the invention, the cytokine is preferably inactivated or attenuated when linked to the ICC and became active only after cleavage of ICC by the protease.
The term “functional fragment” with regard to said cytokines is to be interpreted essentially in analogy to the same term for antibodies (see below). Functional fragments and derivatives of cytokines are those that essentially have the same physiological function/activity as the naturally occurring cytokines.
In a preferred embodiment, the cytokine is IL-15. By “IL-15” or “interleukin-15”, it is herein referred to a cytokine that regulates T and natural killer cell activation and proliferation. Interleukin-15 (IL-15) is a 14 to 15 kDa member of the 4α-helix bundle family of cytokines composed of 114 amino acids whose sequence is available under the accession number NP_000576.1. There is 97% sequence identity between human and simian IL-15 and 73% between human and mouse. This appears to be sufficient for hulL-15 to render it biologically active on simian and murine cells.
IL-15 displays high structural similarity to Interleukin-2 (IL-2). Like IL-2, IL-15 binds to and signals through a complex composed of IL-2/IL-15 receptor beta chain (CD122) and the common gamma chain (gamma-C, CD132). Specificity of the signalling is ensured by IL15 being recognised by the alpha unit of its receptor (IL15RA), whilst IL-2 binds IL2RA. IL-15 stimulates the production of proinflammatory cytokines (e.g. TNFα, IL-1, IFNγ), the proliferation and lg synthesis of activated B cells, the activation of TH1, monocytes and lymphokine activated killer cells, the proliferation of mast cells and T cells and inhibits the apoptosis of T and B cells. In addition to the mentioned functional activities IL-15 plays a pivotal role in the development, survival and function of NK cells [Joost J. Oppenheim et al., Cytokine Reference; 213-221, (2002)]. IL-15 is a cytokine that primarily stimulates the proliferation and cytotoxic functions of CD8T cells and NK cells leading to enhanced anti-tumour responses (Waldmann, J Investig Dermatol Symp Proc. 16(1): S28-30, 2013). While initially showing promise as a cancer therapeutic, the efficacy of IL-15 was limited by its short in vivo half-life. However, new IL-15-based therapies have been developed and are currently in clinical trials (Robinson ∈t Schluns, Immunol Lett. 190: 159-168, 2017). The inventors have now shown that IL-15 is not active when fused to an antibody moiety and becomes activated only when released by the cleavage of the linker. Immunocytokines comprising IL-15 localise in vivo to the tumour where they are cleaved. This allows for circumventing the short half-life problem. In addition, the active cytokine is delivered to the site where it is needed, reducing the risks of side effects.
In another preferred embodiment, the cytokine is CXCL10. By “CXCL10” or “C-X-C motif chemokine 10” or “interferon gamma-induced protein 10” or “IP10”, it is herein referred to an 8.7-kDa CXC chemokine which functions to recruit activated and memory lymphocytes to sites of inflammation. The secreted bioactive form (after cleavage of the signal peptide) is a polypeptide of 77 residues (corresponding to positions 22-98 of NP_001556), herein designated “long CXCL10”, which binds the CXCR3 receptor. CXCL10 signalling through the chemokine receptor CXCR3 has an important role in lymphocyte migration and function. Notably, CXCL10 appears to enhance T cell-dependent anti-cancer immunity (Karin et Razon, Cytokine, 109:24-28, 2018).
In another preferred embodiment, the cytokine is IL-36. As used herein, the expressions “IL-36” or “hIL-36” or “Interleukin-36” refers to a subgroup of the IL-1 family with pro-inflammatory properties (see e.g. Murrieta-Coxca, Int J Mol Sci., 20(7). pii: E1649, 2019). By “IL-36”, it is notably referred to IL-36α (IL-1F6), IL-36β (IL-1F8), and IL-36γ (IL-1F9). As used herein, “IL-36α” refers to a 158-amino acid protein whose sequence is available under the accession number NP_055255, “IL-36β” a 157-amino acid protein with 2 isoforms (accession numbers: NP_055253 and NP_775270), and “IL-36γ” a 169-amino acid protein with 2 isoforms (accession numbers: NP_001265497 and NP_062564). IL-36α, IL-36β, and IL-36γ are agonist ligands with pro-inflammatory activity. They promote the induction of various inflammatory mediators including cytokines, chemokines, growth factors, and antimicrobial peptides. All of them use the same receptor, IL-36R, which dimerises with IL-1 RAcP to activate intracellular signalling cascades. This pathway culminates with the expression of inflammatory cytokines driven by AP-1 (activator protein 1) and NF-kB transcription factors.
In yet another preferred embodiment, the cytokine is IFNα. As used herein, the expressions “IFNα” or “IFN-α” or “Interferon α” refer to a subtype of human type-I interferons (IFN-I), a large subgroup of interferon proteins that help regulate the activity of the immune system. All IFN-I, including IFN-α, bind to a specific cell surface receptor complex known as the IFN-α receptor (IFNAR) that consists of IFNAR1 and IFNAR2 chains (see e.g., López de Padilla ∈t Niewold, Gene, 576(1 Pt 1): 14-21, 2016). There are 12 functional human IFN-α proteins (IFN-α1/13, IFN-α2, IFN-α4, IFN-α5, IFN-α6, IFN-α7, IFN-α8, IFN-α10, IFN-α14, IFN-α16, IFN-α17, and IFN-α21), all of which exhibit high homology in their primary, secondary, and tertiary structures. Each of the IFNA genes (IFNA1, IFNA2, IFNA3, IFN4, IFN5, IFN6, IFN7, IFN8, IFNA10, IFNA14, IFNA16, IFNA17, and IFNA21) encode a pre-protein comprising a 23 amino acid signal peptide which is cleaved upon secretion, resulting in a mature 166-residue protein (Uniprot accession number: Q6QNB6) except for IFN-2 which is composed of 165 amino acids only (Uniprot accession number: P01563). Indeed, the aspartic acid residue present at position 44 in other subtypes of IFN-α is missing in IFN-α2.
According to this embodiment, the invention relates to a fusion protein comprising:
(i) an antibody or antigen-binding fragment thereof fused to
(ii) a cleavable peptide linker, and
(iii) a cytokine, preferably IL-15, CXCL10, IL-36, or IFN-α, or functional fragments thereof.
Methods of Identification of Peptide Cleavage Linkers and Cytokines
The inventors have shown that it is possible to identify linkers suitable for use in the present fusion proteins. The experimental data show that several linkers can be discriminated according to whether they are cleaved or not in vitro. The relevance of these in vitro results is emphasised by the fact that all the linkers thus identified are cleaved in vivo, thus liberating an active cytokine at the site of the tumour.
Thus, in another aspect, a method of selecting a peptide cleavable linker is herein provided. This method comprises the steps of:
-
- (i) providing a fusion protein as described herein, said fusion protein comprising the peptide cleavable linker to be tested;
- (ii) contacting said fusion protein with the relevant protease; and
- (iii) detecting the cleavage of said fusion protein.
In an embodiment, the method is carried out in vitro. In another embodiment, the method is carried out in vivo. According to this specific embodiment, step (ii) of the method comprises administering the fusion protein of step (i) to a mammal, preferably a rodent, most preferably a mouse.
Detection of the cleavage of the linker can be performed by any means available to the person of skills in the art. It may be notably performed using specific antibodies, in particular using well known technologies such as immunoprecipitation with specific antibodies, western blot, ELISA or ELISPOT, antibodies microarrays, or tissue microarrays coupled to immunohistochemistry. Other suitable techniques include FRET or BRET, single cell microscopic or histochemistry methods using single or multiple excitation wavelength and applying any of the adapted optical methods, such as electrochemical methods (voltammetry and amperometry techniques), atomic force microscopy, and radio frequency methods, e.g. multipolar resonance spectroscopy, confocal and non-confocal, detection of fluorescence, luminescence, chemiluminescence, absorbance, reflectance, transmittance, and birefringence or refractive index (e.g., surface plasmon resonance, ellipsometry, a resonant mirror method, a grating coupler waveguide method or interferometry), cell ELISA, flow cytometry, radioisotopic, magnetic resonance imaging, analysis by polyacrylamide gel electrophoresis (SDS-PAGE); HPLC-Mass Spectroscopy; Liquid Chromatography/Mass Spectrometry/Mass Spectrometry (LC-MS/MS)).
Alternatively, the cleavage of the linker can also be detected with a functional test. Notably, the hydrolysis of the linker releases an active cytokine moiety, whereas said cytokine moiety was attenuated when part of the fusion protein. In this embodiment, step (iii) of the method comprises measuring the activity of the cytokine moiety. Preferably, step (iii) further comprises comparing the activity of the cytokine moiety of said fusion protein which has been contacted with the relevant protease in step (ii), with the activity of the cytokine moiety of said fusion protein which has not been contacted with the protease. According to a preferred embodiment, the linker is cleaved if the activity of the cytokine moiety of said fusion protein which has been contacted with the relevant protease in step (ii), is increased at least 2-fold, preferably at least 3-fold, preferably at least 4-fold, preferably at least 5-fold, preferably at least 10-fold, preferably at least 20-fold, preferably at least 50-fold, preferably at least 100-fold, relative to the activity of the cytokine moiety of the untreated fusion protein. More preferably, the linker is cleaved if the activity of the cytokine moiety is increased at least 10-fold.
In addition, it is immediately apparent that cytokines and variants thereof can be easily tested for their suitability in the present immunocytokines. A “cytokine variant” as used herein refers to a cytokine which differs from a main species cytokine. For example, a cytokine variant may have an amino acid sequence which differs from a main species cytokine. Ordinarily, variants will possess at least about 70% homology with the main species cytokine, and preferably, they will be at least about 80%, and more preferably at least about 90% homologous with the main species cytokine. The cytokine variants possess substitutions, deletions, and/or additions at certain positions within or adjacent to the amino acid sequence of the main species cytokines. Alternatively, the cytokine variant may differ from a main species cytokine in at least one post-translational modification. For example, the cytokine variant may carry one or more carbohydrate moieties attached thereto which differ from one or more carbohydrate moieties attached to a main species antibody.
Thus, in another aspect, a method of selecting a cytokine or a variant thereof is herein provided. This method comprises the steps of:
-
- (i) providing a fusion protein as described herein, said fusion protein comprising the cytokine or variant thereof to be tested;
- (ii) contacting said fusion protein with the relevant protease; and
- (iii) detecting the activity of said cytokine.
In an embodiment, the method is carried out in vitro. In another embodiment, the method is carried out in vivo. According to this specific embodiment, step (ii) of the method comprises administering the fusion protein of step (i) to a mammal, preferably a rodent, most preferably a mouse.
If the cytokine or the variant is suitable for use in an immunocytokine as described herein, the hydrolysis of the linker will release an active cytokine moiety, whereas said cytokine moiety is attenuated when part of the fusion protein. In this embodiment, step (iii) of the method comprises measuring the activity of the cytokine moiety. Preferably, step (iii) further comprises comparing the activity of the cytokine moiety of said fusion protein which has been contacted with the relevant protease in step (ii), with the activity of the cytokine moiety of said fusion protein which has not been contacted with the protease. According to a preferred embodiment, the cytokine or cytokine variant is active if the activity of the cytokine moiety of said fusion protein which has been contacted with the relevant protease in step (ii), is increased at least 2-fold, preferably at least 3-fold, preferably at least 4-fold, preferably at least 5-fold, preferably at least 10-fold, preferably at least 20-fold, preferably at least 50-fold, preferably at least 100-fold, relative to the activity of the cytokine moiety of the untreated fusion protein. More preferably, the cytokine or cytokine variant is active if said activity is increased at least 10-fold.
The skilled person will know how to measure the activity of the cytokine moiety depending upon the nature of said cytokine. Cytokine activity can be determined by a variety of methods including but not limited to the techniques of enzyme fragment complementation (Eglen J Biomol Screen. 2004 August; 9(5):398-408), proximity ligation assay (Andersen et al. Cytokine. 2013 October; 64(1):54-7) NF-κB translocation (Trask 2012, Assay Guidance Manual [Internet]. Bethesda (Md.): Eli Lilly ∈t Company and the National Center for Advancing Translational Sciences; 2004-2012 Oct. 1.) Beta-arrestin recruitment (Wang Assay Guidance Manual [Internet]. Bethesda (Md.): Eli Lilly ∈t Company and the National Center for Advancing Translational Sciences; 2004-2017 Nov. 20.) Bioluminescence Resonance Energy Transfer (Compan Methods Mol Biol. 2016; 1417:89-95). These methods have been used for a wide range of cytokines and can be easily adapted to the needs of the particular cytokine of interest as required.
The skilled person will in particular refer to the experimental section of the present application, wherein instances of such assays are described.
Polynucleotides Encoding an Immunocytokine
Also provided herein are polynucleotides comprising a nucleotide sequence encoding a fusion protein as described above. Also provided herein are polynucleotides that hybridise under high stringency, intermediate or lower stringency hybridisation conditions, e.g., as defined supra, to polynucleotides that encode a fusion protein or modified fusion protein provided herein.
In certain embodiments, nucleic acid molecules provided herein comprise or consist of a nucleic acid sequence encoding a VH or a VL amino acid sequence fused to a cleavable peptide linker and a cytokine, as provided herein. In other embodiments, nucleic acid molecules provided herein comprise or consist of a nucleic acid sequence encoding a VH or a VL amino acid sequence which is not fused to additional sequences. In yet other embodiments, the nucleic acid molecules provided herein comprise or consist of combinations of a nucleic acid sequence encoding a VH or a VL amino acid sequence fused to a cleavable peptide linker and a cytokine and of a nucleic acid sequence encoding a VH or a VL amino acid sequence which is not fused to additional sequences. Preferably, a nucleic acid sequence encoding a VH amino acid sequence fused to a cleavable peptide linker and a cytokine is combined with a nucleic acid sequence encoding a VL amino acid sequence which is not fused to additional sequences. Alternatively, said combination comprises a nucleic acid sequence encoding a VL amino acid sequence fused to a cleavable peptide linker and a cytokine and a nucleic acid sequence encoding a VH amino acid sequence which is not fused to additional sequences.
Recombinant Expression of an Antibody
A variety of expression systems may be used to express the present immunocytokines as described herein. In one aspect, such expression systems represent vehicles by which the coding sequences of interest may be produced and subsequently purified, but also represent cells which may, when transiently transfected with the appropriate nucleotide coding sequences, express an antibody of the invention in situ.
The invention provides vectors comprising the polynucleotides described herein. In one embodiment, the vector contains a polynucleotide encoding a heavy chain of the immunocytokine of the invention, wherein said heavy chain is fused or not to a cleavable peptide linker and a cytokine. In another embodiment, said polynucleotide encodes the light chain of an immunocytokine of the invention, wherein said light chain is fused or not to a cleavable peptide linker and a cytokine. The invention also provides vectors comprising polynucleotide molecules encoding fusion proteins, modified antibodies, antibody fragments, and probes thereof.
In order to express the heavy and/or light chain of an immunocytokine disclosed herein, the polynucleotides encoding said heavy and/or light chains are inserted into expression vectors such that the genes are operatively linked to transcriptional and translational sequences.
“Operably linked” sequences include both expression control sequences that are contiguous with the gene of interest and expression control sequences that act in trans or at a distance to control the gene of interest. The term “expression control sequence” as used herein refers to polynucleotide sequences which are necessary to effect the expression and processing of coding sequences to which they are ligated. Expression control sequences include appropriate transcription initiation, termination, promoter and enhancer sequences; efficient RNA processing signals such as splicing and polyadenylation signals; sequences that stabilize cytoplasmic mRNA; sequences that enhance translation efficiency (i.e., Kozak consensus sequence); sequences that enhance protein stability; and when desired, sequences that enhance protein secretion. The nature of such control sequences differs depending upon the host organism; in prokaryotes, such control sequences generally include promoter, ribosomal binding site, and transcription termination sequence; in eukaryotes, generally, such control sequences include promoters and transcription termination sequence. The term “control sequences” is intended to include, at a minimum, all components whose presence is essential for expression and processing and can also include additional components whose presence is advantageous, for example, leader sequences and fusion partner sequences.
The term “vector”, as used herein, is intended to refer to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked. One type of vector is a “plasmid”, which refers to a circular double stranded DNA loop into which additional DNA segments may be ligated. Another type of vector is a viral vector, wherein additional DNA segments may be ligated into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they are introduced (e.g., bacterial vectors having a bacterial origin of replication and episomal mammalian vectors). Other vectors (e.g., non-episomal mammalian vectors) can be integrated into the genome of a host cell upon introduction into the host cell, and thereby are replicated along with the host genome.
Certain vectors are capable of directing the expression of genes to which they are operatively linked. Such vectors are referred to herein as “recombinant expression vectors” (or simply, “expression vectors”). In general, expression vectors of utility in recombinant DNA techniques are in the form of plasmids. In the present specification, “plasmid” and “vector” may be used interchangeably as the plasmid is the most commonly used form of vector. However, the invention is intended to include such forms of expression vectors, such as bacterial plasmids, YACs, cosmids, retrovirus, EBV-derived episomes, and all the other vectors that the one skilled in the art will know to be convenient for ensuring the expression of the heavy and/or light chains of the antibodies of the invention. The skilled man will realise that the polynucleotides encoding the heavy and the light chains can be cloned into different vectors or in the same vector. In a preferred embodiment, said polynucleotides are cloned into two vectors.
Polynucleotides of the invention and vectors comprising these molecules can be used for the transformation of a suitable host cell. The term “host cell”, as used herein, is intended to refer to a cell into which a recombinant expression vector has been introduced in order to express the present immunocytokine. It should be understood that such terms are intended to refer not only to the particular subject cell but also to the progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term “host cell” as used herein.
Transformation can be performed by any known method for introducing polynucleotides into a cell host. Such methods are well known of the man skilled in the art and include dextran-mediated transformation, calcium phosphate precipitation, polybrene-mediated transfection, protoplast fusion, electroporation, encapsulation of the polynucleotide into liposomes, biolistic injection and direct microinjection of DNA into nuclei.
The host cell may be co-transfected with two or more expression vectors, including the vector expressing the protein of the invention. In particular, the other expression vectors may encode enzymes involved in post-translational modifications, such as glycosylation. For example, a host cell can be transfected with a first vector encoding an immunocytokine as described above, and a second vector encoding a glycosyltransferase polypeptide. Alternatively, the host cell can be transformed with a first vector encoding an immunocytokine, a second vector encoding a glycosyltransferase, as described above, and a third vector encoding another glycosyltransferase. Mammalian cells are commonly used for the expression of a recombinant therapeutic immunoglobulins, especially for the expression of whole recombinant antibodies. For example, mammalian cells such as HEK293 or CHO cells, in conjunction with a vector, containing the expression signal such as one carrying the major intermediate early gene promoter element from human cytomegalovirus, are an effective system for expressing the present immunocytokine (Foecking et al., 1986, Gene 45:101; Cockett et al., 1990, Bio/Technology 8:2).
It is also possible to select a host cell which modulates the expression of the inserted sequences or modifies and processes the gene product in the specific fashion desired. Such modifications (e.g., glycosylation) and processing of protein products may be important for the function of the protein. Different host cells have features and specific mechanisms for the post-translational processing and modification of proteins and gene products. Appropriate cell lines or host systems are chosen to ensure the correct modification and processing of the expressed antibody of interest. Hence, eukaryotic host cells which possess the cellular machinery for proper processing of the primary transcript, glycosylation of the gene product may be used. Such mammalian host cells include, but are not limited to, CHO, COS, HEK293, NS/0, BHK, Y2/0, 3T3 or myeloma cells (all these cell lines are available from public depositories such as the Collection Nationale des Cultures de Microorganismes, Paris, France, or at the American Type Culture Collection, Manassas, Va., U.S.A.).
For long-term, high-yield production of recombinant proteins, stable expression is preferred. In one embodiment of the invention, cell lines which stably express the immunocytokine may be engineered. Rather than using expression vectors which contain viral origins of replication, host cells are transformed with DNA under the control of the appropriate expression regulatory elements, including promoters, enhancers, transcription terminators, polyadenylation sites, and other appropriate sequences known to the person skilled in art, and a selectable marker. Following the introduction of the foreign DNA, engineered cells may be allowed to grow for one to two days in an enriched media, and then are moved to a selective media. The selectable marker on the recombinant plasmid confers resistance to the selection and allows cells to stably integrate the plasmid into a chromosome and be expanded into a cell line. Other methods for constructing stable cell lines are known in the art. In particular, methods for site-specific integration have been developed. According to these methods, the transformed DNA under the control of the appropriate expression regulatory elements, including promoters, enhancers, transcription terminators, polyadenylation sites, and other appropriate sequences is integrated in the host cell genome at a specific target site which has previously been cleaved (Moele et al., Proc. Natl. Acad. Sci. U.S.A., 104(9): 3055-3060; U.S. Pat. Nos. 5,792,632; 5,830,729; 6,238,924; WO 2009/054985; WO 03/025183; WO 2004/067753, all of which are incorporated herein by reference).
A number of selection systems may be used, including but not limited to the Herpes simplex virus thymidine kinase (Wigler et al., Cell 11:223, 1977), hypoxanthine-guanine phosphoribosyltransferase (Szybalska et al., Proc Natl Acad Sci USA 48:202, 1992), glutamate synthase selection in the presence of methionine sulfoximide (Adv Drug Del Rev, 58:671, 2006, and website or literature of Lonza Group Ltd.) and adenine phosphoribosyltransferase (Lowy et al., Cell 22:817, 1980) genes in tk, hgprt or aprt cells, respectively. Also, antimetabolite resistance can be used as the basis of selection for the following genes: dhfr, which confers resistance to methotrexate (Wigler et al., Proc Natl Acad Sci USA 77: 357, 1980); gpt, which confers resistance to mycophenolic acid (Mulligan et al., Proc Natl Acad Sci USA 78: 2072, 1981); neo, which confers resistance to the aminoglycoside, G-418 (Wu et al., Biotherapy 3: 87, 1991); and hygro, which confers resistance to hygromycin (Santerre et al., Gene 30: 147, 1984). Methods known in the art of recombinant DNA technology may be routinely applied to select the desired recombinant clone, and such methods are described, for example, in Ausubel et al., eds., Current Protocols in Molecular Biology, John Wiley Ft Sons (1993). The expression levels of an immunocytokine can be increased by vector amplification. When a marker in the vector system expressing an antibody is amplifiable, an increase in the level of inhibitor present in the culture will increase the number of copies of the marker gene. Since the amplified region is associated with the gene encoding the immunocytokine of interest, production of said immunocytokine will also increase (Crouse et al., Mol Cell Biol 3: 257, 1983). Alternative methods of expressing the gene of the invention exist and are known to the person of skills in the art. For example, a modified zinc finger protein can be engineered that is capable of binding the expression regulatory elements upstream of the gene of the invention; expression of the said engineered zinc finger protein (ZFN) in the host cell of the invention leads to increases in protein production (see e.g., Reik et al., Biotechnol. Bioeng., 97(5), 1180-1189, 2006). Moreover, ZFN can stimulate the integration of a DNA into a predetermined genomic location, resulting in high-efficiency site-specific gene addition (Moehle et al, Proc Natl Acad Sci USA 104:3055, 2007).
The immunocytokine of the invention may be prepared by growing a culture of the transformed host cells under culture conditions necessary to express the desired antibody. The resulting expressed immunocytokine may then be purified from the culture medium or cell extracts. Soluble forms of the immunocytokine can be recovered from the culture supernatant. It may then be purified by any method known in the art for purification of an immunoglobulin molecule, for example, by chromatography (e.g., ion exchange, affinity, particularly by Protein A affinity for Fc, and so on), centrifugation, differential solubility or by any other standard technique for the purification of proteins. Suitable methods of purification will be apparent to a person of ordinary skills in the art.
When addressed to the tumour site, the immunocytokines provided herein are cleaved, thus releasing a cytokine such as IL-15, which has anti-tumour activity. In addition, some of the antibody moieties are capable of inducing ADCC and/or CDC responses and/or have an intrinsic anti-tumour activity. It will thus be appreciated by the skilled person that the immunocytokines provided herein are useful in the treatment of metastatic tumours and diseases such as cancer.
The terms “treating” or “treatment” refer to administering or the administration of a composition described herein in an amount, manner, and/or mode effective to improve a condition, symptom, or parameter associated with a disorder or to prevent progression or exacerbation of the disorder (including secondary damage caused by the disorder) to either a statistically significant degree or to a degree detectable to one skilled in the art.
Another aspect of the invention relates to pharmaceutical compositions of the immunocytokines described herein.
The pharmaceutical composition of the invention may contain, in addition to the immunocytokine of the invention, various diluents, fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art.
As used herein, “pharmaceutically acceptable carrier” includes any and all solvents, buffers, salt solutions, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like that are physiologically compatible. The type of carrier can be selected based upon the intended route of administration. In various embodiments, the carrier is suitable for intravenous, intraperitoneal, subcutaneous, intramuscular, topical, transdermal or oral administration. Pharmaceutically acceptable carriers include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion. The use of media and agents for pharmaceutically active substances is well known in the art. As detailed below, additional active compounds can also be incorporated into the compositions, such as anti-cancer and/or anti-angiogenesis agents; in particular, the additional active compound can be an anti-angiogenic agent, a chemotherapeutic agent, or a low-molecular weight agent. A typical pharmaceutical composition for intravenous infusion could be made up to contain 250 ml of sterile Ringer's solution, and 100 mg of the combination. Actual methods for preparing parenterally administrable compounds will be known or apparent to those skilled in the art and are described in more detail in for example, Remington's Pharmaceutical Science, 17th ed., Mack Publishing Company, Easton, Pa. (1985), and the 18th and 19th editions thereof, which are incorporated herein by reference.
The immunocytokine present in the composition preferably is formulated in an effective amount. An “effective amount” refers to an amount effective, at dosages and for periods of time necessary, to achieve the desired result, such as induction of apoptosis in tumour cells. A “therapeutically effective amount” means an amount sufficient to influence the therapeutic course of a particular disease state. A therapeutically effective amount is also one in which any toxic or detrimental effects of the agent are outweighed by the therapeutically beneficial effects.
For therapeutic applications, the immunocytokine is administered to a mammal, preferably a human, in a pharmaceutically acceptable dosage form such as those discussed above, including those that may be administered to a human intravenously as a bolus or by continuous infusion over a period of time, by intramuscular, intraperitoneal, intracerebrospinal, subcutaneous, intraarticular, intrasynovial, intrathecal, oral, topical, or inhalation routes. The immunocytokine is also suitably administered by intratumoural, peritumoural, intralesional, or perilesional routes, to exert local as well as systemic therapeutic effects. The intraperitoneal route is expected to be particularly useful, for example, in the treatment of ovarian tumours. Dosage regimens may be adjusted to provide the optimum response. For example, a single bolus may be administered, several divided doses may be administered over time, or the dose may be proportionally reduced or increased. One skilled in the art in the field of preparing formulations can readily select the proper form and mode of administration depending upon the particular characteristics of the product selected, the disease or condition to be treated, the stage of the disease or condition and other relevant circumstances
The compositions of the invention can be administered to a subject to effect cell growth activity in a subject. As used herein, the term “subject” is intended to include living organisms in which apoptosis can be induced, and specifically includes mammals, such as rabbits, dogs, cats, mice, rats, monkey transgenic species thereof, and preferably humans.
The effectiveness of the immunocytokine in preventing or treating cancer may be improved by administering said immunocytokine serially or in combination with another agent that is effective for those purposes, such as tumour necrosis factor (TNF), an antagonist capable of inhibiting or neutralising the angiogenic activity of acidic or basic fibroblast growth factor (FGF), platelet-derived growth factor (PDGF), or hepatocyte growth factor (HGF), an antagonist capable of inhibiting or neutralising the coagulant activities of tissue factor, protein C, or protein S (see WO 91/01753), an antagonist such as an antibody capable of binding to HER2 receptor (see U.S. Pat. No. 5,772,997), or one or more conventional therapeutic agents such as, for example, alkylating agents, folic acid antagonists, anti-metabolites of nucleic acid metabolism, antibiotics, pyrimidine analogs, 5-fluorouracil, cisplatin, purine nucleosides, amines, amino acids, triazol nucleosides, or corticosteroids.
In addition, the pharmaceutical composition of the invention may also comprise another agent which is capable of modulating immune cell, notably T cell or monocyte, activation and/or function. In particular, the pharmaceutical composition of the invention may further comprise a therapeutically effective amount of an antagonist to a co-inhibitory molecule. In some embodiments, the co-inhibitory molecule is selected from the group consisting of CD86, CD80, PDL-1, PDL-2, CTLA-4, PD1, LAG3, BTNL2, B7-H3, B7-H4, a butyrophilin, CD48, CD244, TIM-3, CD200R, CD200, CD160, BTLA, HVEM, LAIR1, TIM1, Galectin 9, TIM3, CD48, 2B4, CD155, CD112, CD113 and TIGIT. The antagonist to the co-inhibitory molecule includes an antibody against the co-inhibitory molecule. It is recognised that antagonist to other co-inhibitory molecules are well known in the art, such as those described in Mercier et al., Frontiers in Immunology, 6:418 (2015), Kyi et al., FEBS Letters, 588:368-376 (2014) and Pardoll, Nature Reviews, 12:252-264 (2012). In some other embodiments, the pharmaceutical composition described herein further comprises a therapeutically effective amount of an agonist to a co-stimulatory molecule. In some embodiments, the co-stimulatory molecule is selected from the group consisting of CD154, TNFRSF25, GITR, 4-1BB, OX40, CD27, TMIGD2, ICOS, CD28, CD40, TL1A, GITRL, 41BBL, OX40L, CD70, HHLA2, ICOSL, a cytokine, LIGHT, HVEM, CD30, CD30L, B7-H2, CD80, CD86, CD40L, TIM4, TIM1, SLAM, CD48, CD58, CD155, CD112, DR3, GITR, CD2, and CD226. The agonist to the co-stimulatory molecule includes an agonistic antibody against the co-stimulatory molecule. It is recognised that agonists to co-stimulatory molecules are well known in the art, such as those described in Mercier et al., Frontiers in Immunology, 6:418 (2015), Kyi et al., FEBS Letters, 588:368-376 (2014) and Capece et al., J. Biomed. Biotechnol. 2012:926321, 17 pages (2012).
In another aspect of the invention, the administration is combined with an administration of therapeutically effective amount of chemotherapeutic agent, such as for example, taxol (paclitaxel) or taxotere (docetaxel).
Chemotherapeutic agents include without any limitations, anti-microtubule agents such as diterpenoids and vinca alkaloids; platinum coordination complexes; alkylating agents such as nitrogen mustards, oxazaphosphorines, alkylsulfonates, nitrosoureas, and triazenes; antibiotic agents such as anthracyclins, actinomycins and bleomycins; topoisomerase II inhibitors such as epipodophyllotoxins; antimetabolites such as purine and pyrimidine analogues and antifolate compounds; topoisomerase I inhibitors such as camptothecins; hormones and hormonal analogues; signal transduction pathway inhibitors; non-receptor tyrosine kinase angiogenesis inhibitors; immunotherapeutic agents; proapoptotic agents; and cell cycle signalling inhibitors. In addition, the methods of the invention can be combined with another anti-cancer treatment, anti-angiogenic agent, or chemotherapeutic agent or radiation therapy. A preferred example is docetaxel or taxotere. Other examples include, gemcitabine, cisplatin diterpenoids and vinca alkaloids, paclitaxel, vinblastine, vincristine, and vinorelbine, carboplatin, cyclophosphamide, melphalan, and chlorambucil, busulfan, carmustine, dacarbazine, cyclophosphamide, melphalan, chlorambucil, busulfan, carmustine, dacarbazine, anti-neoplastic agents including, but not limited to, actinomycins such as dactinomycin, anthrocyclins such as daunorubicin and doxorubicin, bleomycins, epipodophyllotoxins, etoposide and teniposide; antimetabolite neoplastic agents, 5-fluorouracil, methotrexate, cytarabine, mecaptopurine, thioguanine, camptothecins, irinotecan HCl, and topotecan HCl.
A variety of different chemotherapeutic agents or anti-cancer polypeptides can also be selected. Information sources such as www.clinicaltrials.gov, www.ncbi.nlm.nih and www.drugs.com, include references to polypeptides and agents that can be selected.
The immunocytokine and the pharmaceutical compositions of the invention are especially useful in the treatment or prevention of several types of cancers.
Another aspect of the invention thus relates to the immunocytokine described herein for use in the treatment of cancer.
The invention also relates to a pharmaceutical composition comprising the immunocytokine described herein for use in the treatment of cancer.
The cancers which may be treated by the present immunocytokine are cancers in which the antigen recognised by the antibody moiety of said immunocytokine is expressed. These cancers include (but not limited to) the following: carcinomas and adenocarcinomas, including that of the bladder, breast, colon, head-and-neck, prostate, kidney, liver, lung, ovary, pancreas, stomach, cervix, thyroid and skin, and including squamous cell carcinoma; hematopoietic tumours of lymphoid lineage, including multiple myeloma, leukaemia, acute and chronic lymphocytic (or lymphoid) leukaemia, acute and chronic lymphoblastic leukaemia, B-cell lymphoma, T-cell lymphoma, non-Hodgkin lymphoma (e.g. Burkitt's lymphoma); hematopoietic tumours of myeloid lineage, including acute and chronic myelogenous (myeloid or myelocytic) leukaemias, and promyelocytic leukaemia; tumours of mesenchymal origin, including fibrosarcoma, osteosarcoma and rhabdomyosarcoma; tumours of the central and peripheral nervous system, including astrocytoma, neuroblastoma, glioma, and schwannomas; and other tumours, including melanoma, teratocarcinoma, xeroderma pigmentosum, keratoacanthoma, and seminoma, and other cancers yet to be determined in which said antigen is expressed. By cancers in which the antigen recognised by the antibody moiety of said immunocytokine is expressed, it is herein referred to cancers displaying high expression of said antigen, relative to the expression level of said antigen on a normal adult cell.
Other agents described above, e.g. anti-angiogenic agents or chemotherapeutic agents may be present in the composition being administered or may be administered separately. In one aspect of the invention, the administration is performed with the other active principle, either simultaneously, separately or sequentially over time. When the administration is performed simultaneously, the two active principles may be combined in a single pharmaceutical composition, comprising the two compositions, such as a tablet or a gel capsule. On the other hand, the two active principles may, whether or not they are administered simultaneously, be present in separate pharmaceutical compositions. To this end, the combination may be in the form of a kit comprising, on the one hand, the immunocytokine described herein and, on the other hand, the second active principle, the immunocytokine described herein and the second active principle being in separate compartments and being intended to be administered simultaneously, separately, or sequentially over time.
The present combination can be administered especially for treating cancer in combination with chemotherapy, protein therapy (i.e., using a therapeutic agent such as an antibody or recombinant protein), gene therapy, radiotherapy, immunotherapy, surgical intervention, or a combination of these. Long-term therapy is equally possible as is adjuvant therapy in the context of other treatment strategies, as described above.
Cytokines such as IL-15 are capable of stimulating tumour-specific T cell responses that are highly-specific. For example, administration of IL-15 induces the selective activation and proliferation in CD8 T cells and NK cells, the very cell types most amenable to mediating anti-tumour responses (Waldmann, J Investig Dermatol Symp Proc. 16(1): S28-30, 2013).
In some embodiments, the immunocytokine can be used in a method of modulating Immune cell function, mediated by binding of the cytokine moiety, preferably IL-15, of said immunocytokine. Preferably, said immune cell is a T cell or a monocyte. Such methods can include contacting the immune cell, preferably a T cell or a monocyte, with the immunocytokine described herein. In some embodiments, the method for modulating the immune cell (notably T cell or monocyte) function includes administering an effective amount of a composition comprising an immunocytokine provided herein to a subject. In some aspects, the T cell function that is modulated includes increasing T cell activation. Such T cell activation can further include increasing T cell proliferation. In some aspects, the monocyte function that is modulated includes increasing secretion of anti-cancer cytokines. Methods for assaying the modulation of an immune response are well known to one of skill in the art, and it is understood that a skilled artisan would be able to readily conduct such assays.
In some embodiments, an immunocytokine or a composition comprising an immunocytokine, including as described herein, can be used either alone or in combination with another compound or treatment. For example, in some embodiments, the other compound is an antagonist to a co-inhibitory molecule or an agonist to a co-stimulatory molecule. In such embodiments, the combined therapy leads to reinvigoration or de novo activation of the immune system through activated T cells that is greater than the administration of either compound or treatment individually. This activation of the immune system will result in a highly beneficial physiological response in the treatment of cancer.
In some embodiments, the methods described herein can include administering a therapeutically effective amount of an immunocytokine in combination with a therapeutically effective amount of an antagonist to a co-inhibitory molecule. In some embodiments, the co-inhibitory molecule is selected from the group consisting of CD86, CD80, PDL-1, PDL-2, CTLA-4, PD1, LAG3, BTNL2, B7-H3, B7-H4, a butyrophilin, CD48, CD244, TIM-3, CD200R, CD200, CD160, BTLA, HVEM, LAIR1, TIM1, Galectin 9, TIM3, CD48, 2B4, CD155, CD112, CD113 and TIGIT. The antagonist to the co-inhibitory molecule includes an antibody against the co-inhibitory molecule. It is recognised that antagonist to other co-inhibitory molecules are well known in the art, such as those described in Mercier et al., Frontiers in Immunology, 6:418 (2015), Kyi et al., FEBS Letters, 588:368-376 (2014) and Pardoll, Nature Reviews, 12:252-264 (2012). According to this embodiment, the invention relates to an immunocytokine for use in treatment of cancer as described above, said use further comprising the administration of an antagonist to a co-inhibitory molecule, wherein said co-inhibitory molecule is selected from the group consisting of CD86, CD80, PDL-1, PDL-2, CTLA-4, PD1, LAG3, BTNL2, B7-H3, B7-H4, a butyrophilin, CD48, CD244, TIM-3, CD200R, CD200, CD160, BTLA, HVEM, LAIR1, TIM1, Galectin 9, TIM3, CD48, 2B4, CD155, CD112, CD113 and TIGIT.
In some embodiments, the methods described herein can include administering a therapeutically effective amount of an immunocytokine in combination with a therapeutically effective amount of an agonist to a co-stimulatory molecule. In some embodiments, the co-stimulatory molecule is selected from the group consisting of CD154, TNFRSF25, GITR, 4-1BB, OX40, CD27, TMIGD2, ICOS, CD28, CD40, TL1A, GITRL, 41BBL, OX40L, CD70, HHLA2, ICOSL, a cytokine, LIGHT, HVEM, CD30, CD30L, B7-H2, CD80, CD86, CD40L, TIM4, TIM1, SLAM, CD48, CD58, CD155, CD112, DR3, GITR, CD2, and CD226. The agonist to the co-stimulatory molecule includes an agonistic antibody against the co-stimulatory molecule. It is recognised that agonists to co-stimulatory molecules are well known in the art, such as those described in Mercier et al., Frontiers in Immunology, 6:418 (2015), Kyi et al., FEBS Letters, 588:368-376 (2014) and Capece et al., J. Biomed. Biotechnol. 2012:926321, 17 pages (2012). According to this embodiment, the invention relates to an immunocytokine for use in treatment of cancer as described above, said use further comprising the administration of an agonist to a co-stimulatory molecule, wherein said co-stimulatory molecule is selected from the group consisting of CD154, TNFRSF25, GITR, 4-1BB, OX40, CD27, TMIGD2, ICOS, CD28, CD40, TL1A, GITRL, 41BBL, OX40L, CD70, HHLA2, ICOSL, a cytokine, LIGHT, HVEM, CD30, CD30L, B7-H2, CD80, CD86, CD40L, TIM4, TIM1, SLAM, CD48, CD58, CD155, CD112, DR3, GITR, CD2, and CD226.
The examples that follow are merely exemplary of the scope of this invention and content of this disclosure. One skilled in the art can devise and construct numerous modifications to the examples listed below without departing from the scope of this invention.
EXAMPLES Example 1: Sequences of the Constructions1. Sequences
Similar results were obtained with a human IgG1 instead of a human IgG1ΔK
1.2. Obtention of the Immunocytokines (ICC)
Sequences coding for the whole ICC (see point 1. Sequences) were cloned into pCDNA3.4 vectors by using the HindIII/BamHI restriction sites, including a signal peptide (Thermo Fisher Scientific). The NanoLuc® DNA sequence was obtained from Promega. Linker modification was achieved by Q5 mutagenesis (New England Biolabs). Fusion proteins were obtained by transient protein expression in Expi HEK293 cells (Thermo Fisher Scientific) grown to a density of 2.5 106/ml in Expi293 Expression Medium (Thermo Fisher Scientific) and co-transfected with 1.25 μg/ml DNA (HC/LC: 1/1 w/w) using polyethyleneimine (PEI, Polyscience, DNA/PEI ratio: 1/4). 2 mM valproic acid (VPA, Sigma-Aldrich) was then added 3 hours post transfection. Supernatants containing the produced fusion proteins were harvested 6 days post-transfection. Proteins were purified by affinity chromatography on Protein A-Sepharose and formulated by overnight dialysis against 25 mM sodium citrate, 150 mM NaCl, 6% Saccharose pH 5.5. Some of the constructions realised are resumed in
The positions (i.e., the fusion sites) of the linker-cytokine on the Ab are explained on
2.1. Material and Methods:
All the purified ICC were characterised by SDS-PAGE in non-reducing, heated conditions and in reducing and heated condition. The SDS-PAGE migration of c9G4-PVGLIG-hIL15, NHS76-PVGLIG-hIL15 and H16/L16-PVGLIG-hIL15 are shown in
ICC integrity was also verified by LC-MS on glycosylated ICC and on deglycosylated ICC after IdeS digestion. Reverse phase separation was performed on an ultra-high-performance liquid chromatography (UHPLC) system (Acquity UPLC H-Class Bio system, Waters) coupled to a Synapt G2si mass spectrometer, instrument control was performed using MassLynx®software (Waters).
For c9G4PVGLIG-IL15, c9G4PVGLIG-hINFa, c9G4PVGLIG-hCCL4, deglycosylation of the Fc region was performed by incubating ICC solution 30 min at 37° C. with IgGZERO® Enzyme (Genovis) at the concentration of 1 unit of enzyme per μg of ICC according with the manufacturer's instructions. For NHS76-PVGLIG-hIL15 and H16L16-PVGLIG-hIL15 which carry out N-glycosylation on the IL15 part, deglycosylation was performed by adding 2 μL of PNGaseF (New England Biolabs, 500000 U/mL) and 2 μL of neuraminidase (New England Biolabs, 50000 U/mL) to 25 μg of sample solution followed by incubation at 37° C. overnight. The deglycosylated ICC were injected on a zorbax diphenyl column (Agilent) heated at 80° C. Elution was performed with water as eluent A and acetonitrile as eluent B, both containing 0.1% FA and 0.02 TFA. The gradient condition was maintained at 30% B for 0.5 min, ramped to 46.9% in 6.5 min and increased to 95% in 0.1 min.
Subunit Fc/2 fragments were obtained by incubating ICC solution during 30 minutes at 37° C. with IdeS enzyme (FabRICATOR®, Genovis) at the concentration of 1 Unit of enzyme per μg of ICC according to the manufacturer's instructions. Deglycosylated and digested ICC were injected on a PLRP-S column (Agilent) heated at 80° C. Elution was performed with water as eluent A and acetonitrile as eluent B, both containing 0.05% TFA. The gradient condition was maintained at 5% B for 5 min, ramped to 50% in 45 min and increased to 95% in 2 min
2.2. Results
On MS chromatogram peaks, m/z spectrum was extracted and mass determined after m/z spectrum deconvolution and calculated masses of deglycosylated ICC and deglycosylated fc/2 were compared with experimental masses.
The LS-MS analysis of deglycosylated c9G4-PVGLIG-hIL15, NHS76-PVGLIG-hIL15 and H16/L16-PVGLIG-hIL15 immunocytokines is represented in (
Whole experimental masses confirmed the ICC structures (2 cytokines I antibody) and Fc/2+Cytokine masses confirmed the cytokine position.
Similar experiments were performed and similar conclusions were obtained for other ICCs.
Example 3: Linker Sequences and Cleavability by MMP-9/2Five linkers from the literature were evaluated as substrates for MMP-9 when fused to four different sites on the PDL1 Ab sequence: N-term HC, N-term LC, C-term HC and C-term LC. The ‘GIVGPL’ linker described as non-cleavable (Chau et al. Bioconjug Chem (2004) 15(4):931-41) was used as negative control. The summary of the constructions and results are displayed in
3.1. Materials and Methods
2 μg of purified ICC were incubated in presence of 40 ng recombinant MMP-9 or MMP-2 (molar ratio 25:1) in assay buffer containing 20 mM Tris pH 7.5, 10 mM CaCl2 and 100 mM NaCl in 20 μl total volume. Samples were incubated at 30° C. for 2.5 hrs under gentle agitation (300 rpm). Cleavage reaction was stopped by addition of loading buffer+reducing agent (4×XT sample Buffer and 20× Reducing Agent, BioRad) and sample heating at 90° C. for 5 min.
Cleavage efficiency was then evaluated by SDS-PAGE. 20 μl of sample were run onto Criterion TGX 4-15% Stain Free gels (BioRad) in Tris-Glycine-SDS buffer (BioRad) at 300 V for 20 min with protein standards (Precision Plus Protein Standards, Unstained, BioRad). Protein bands were then revealed using a ChemiDoc Touch Imager (BioRad).
3.2. Results
3.2.1. Cleavability with different linkers in HC or LC C-terminal fusions of anti-PDL1 antibodies and two different molecules: IL2 and NanoLuc®:
The results are shown in
3.2.2. Cleavability with different linkers in HC or LC N-terminal fusions of anti-PDL1 antibodies and two different molecules: IL2 and NanoLuc®:
The results are shown in
3.2.3. Cleavability of different c9G4-based ICC and H16/L16-IL15 and HHS76-IL15 ICC by human and murine MMP-9/2 (HC C-term fusions and PVGLIG linker). The results are shown in
Note 1: IL15 and IFNα visualisation post-cleavage in impaired by the high level of glycosylation of the proteins. Sample deglycosylation prior cleavage allows the visualisation of the released cytokines, indicating the proteins are not proteolysed by MMP-912 (data not shown).
3.3. Conclusion
Results of
On the other hand, MMP-9 linkers were only weakly cleaved by either MMP-2 or MMP-9 when fused on N-term or C-term of the Ab light chains.
All five c9G4-fusion proteins are cleaved by murine and human MMP-9 and MMP-2 (
4.1. Materials and Methods
ICC were spiked in buffer (50 mM Tris pH7.5, 150 mM NaCl, 20 mM CaCl2)), sera, plasma, and fresh blood at a concentration of 100 μg/ml with and without 12 nM MMP-9. Aliquots of 100 μl were incubated at +37° C. in Protein LoBind Tube (Eppendorf). After 24 hrs samples were removed from the oven and stored at −80° C. until sample processing and analysis.
The ICC was immunoprecipitated from biological fluid by immunoprecipitation using M280 streptavidin magnetics beads coated with 4 μg of CaptureSelect™ human IgG-Fc Biotin. After washing, ICC was eluted with 0.4% TFA in water and freeze drying. The samples were reconstituted in denaturing buffer (6 M Guanidine, 0.1 M Tris, 2 mM EDTA pH 8.0) and reduced in presence of DTT for 45 min at 56° C. Acetic acid was then added to quench the reaction and samples were analysed by LC-MS.
Reverse phase separation was performed on an ultra-high-performance liquid chromatography (UHPLC) system (Acquity UPLC H-Class Bio system, Waters) coupled to a Synapt G2si mass spectrometer, instrument control was performed using MassLynx®software (Waters).
The reduced samples were diluted volume to volume with eluent A and injected on a PLRP-S column heated at 80° C. with a flow rate of 0.5 mL/min. Elution was performed with water as eluent A and acetonitrile as eluent B, both containing 0.05% TFA. The gradient condition was maintained at 5% B for 5 min, ramped to 70% in 45 min and increased to 95% in 2 min.
For each peak of MS chromatogram, m/z spectrum was extracted and mass determined after m/z spectrum deconvolution.
4.2. Results
4.2.1 Validation of MMP-9 Cleavage Site in ICC.
In MMP-9 absence, no cleaved fragments were observed for both anti-PDL1-PVGLIG-NanoLuc® and anti-PDL1-GIVGPL-NanoLuc®, thus both linkers were stable in buffer at the concentration of 12 nM.
Cleavage in presence of MMP-9 was checked by LC/MS as described in Example 2. The results are shown in
In the presence of MMP-9, 100% of antibody anti-PDL1-PVGLIG-NanoLuc® were cleaved in buffer after 24 hrs at 37° C. (
4.2.2. MMP-9 Cleavage in Sera, Plasma and Fresh Blood
The results are shown in
In conclusion, monitoring of In vitro antibody anti-PDL1 hkappa/hIgG4-PVGLIG-NanoLuc® cleavage was not possible in plasma heparin, sera and whole heparin blood (data not shown), probably because MMP-9 was inhibited. In fact, MMP-9 is known to be naturally attenuated in serum, plasma and blood, notably because of the presence of protease inhibitors like A2M.
Example 5: Attenuation of hIL15 when Fused to an AntibodyIn order to evaluate and to compare the biological activity of hIL15, when linked to the ICC or after cleavage by MMP9, a test of IL-15 receptor dimerisation was performed. IL15 in its active form signals through the dimerisation of its two receptor subunits IL2Rβ/IL2Rγ.
5.1. Materials and Methods
5.1.1. Materials and Reagents Recombinant human recombinant pro-MMP-9 was purchased from R&D Systems and activated by 1 mM 4-Aminophenylmercuric acetate (APMA) in buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2), 0.05% Brij-35 (w/v), pH7.5. APMA was then removed using Zeba™ Spin Desalting Columns (ThermoFisher Scientific) and APMA-free MMP-9 was immediately stored at −80° C. until needed. Recombinant human IL15 was purchased from PeproTech. IL15 activity was monitored using the PathHunter® U2OS IL2Rβ/IL2Rγ/(IL2Rα) Dimerisation Bioassay (DiscoverX, Eurofins). The assay allows the detection of the IL15-induced dimerisation of the two receptor subunits IL2Rβ and IL2Rγ.
5.1.2. Methods
The activity of three IL15-based immunocytokines was assessed: NHS76-PVGLIG-hIL15, H16/L16-PVGLIG-hIL15 and c9G4-PVGLIG-hIL15. The effect of recombinant hIL15 and hMMP-9 was also evaluated using the same procedure. All samples were incubated for two hours in presence (+MMP-9) or absence (−MMP-9) of recombinant hMMP-9 in an assay buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2) pH 7.5. Cleavage efficiency was controlled by SDS-PAGE analysis and samples were immediately stored at −20° C. until processing. U2OS IL2Rβ/IL2Rγ/IL2Rα cells were treated by either cleaved or uncleaved ICC and controls for 6 hours. Detection reagent was then added and chemiluminescence intensity was recorded with a microplate reader (Infinite M1000Pro, Tecan). Data analysis was performed with the Prism 7.01 software (GraphPad).
5.2. Results
The results of the hIL15 induced receptor dimerisation for the three tested ICC are presented in
The EC50 of each compound or ICC are shown in Table 9.
As seen in
In the absence of MMP-9, the three evaluated ICC had no significant activity on receptor dimerisation. On the other hand, pre-treatment of the same molecules with MMP-9 results in activity recovery through IL15-induced receptor dimerisation in a dose dependent manner.
It appears thus clearly from these experiments that IL-15 shows a highly attenuated activity when linked to the three antibodies. After cleavage of the ICC by MMP-9, IL15 is liberated in its active form and is again able to fulfil its biological activity.
6.1. Materials and Methods:
6.1.1. Engraftment of Mice and Injection of ICC
Six-week-old immunocompetent BALB/c mice were used for all in vivo assessments. They were housed in sterilized filter-topped cages, maintained in sterile conditions and manipulated according to French and European guidelines.
RENCA (ATCC: CRL-2947), a murine renal carcinoma cell line expressing PDL1 was selected for in vivo evaluations. Mice were injected subcutaneously at DO with 0.5×106 cells. When tumours reached 100 mm3 (11-12 days post tumour cell injection), animals were divided into 9 groups of 6 mice with comparable tumour size and administered intraperitoneally with PDL1-PVGLIG-NanoLuc® or the control isotype c9G4-PVGLIG-NanoLuc®, 200 μg/mouse Q1d1.
6.1.2. Serum Samples
Animals were sacrificed at 0, 3, 6, 24 and 48 hours post administration and blood samples were collected in Na-heparinised tubes by cardiac puncture. Blood samples were centrifuged for 15 min at 1500 g, 4° C. and plasma was collected in 96 well U bottomed plates. Plasma samples were frozen (−80° C.) prior to analysis.
6.1.3. Tumour Samples
Tumours were sampled and snap frozen in liquid nitrogen and were stored at −80° C.
Prior to evaluation, the tumours are “resuspended” in 50 mM Tris-HCL buffer, 150 mM NaCl, 0.5% DOC, 1% Igepal, 1% Triton X100 containing an inhibitor cocktail (lysis buffer) at 200 mg of tumour per ml of buffer.
The tumours are disrupted with Minilys by 3 cycles of agitation at 5000 rpm in the presence of steel balls for 15 seconds. Between 2 cycles the tubes are kept on ice for 2 min. The solution is placed in a 2 ml conical Eppendorf tube and centrifuged at 11500 g at 4° C. for 10 min. The supernatant, i.e., the cell lysate, is recovered. Its protein content is measured by Bicinconinic Acid assay according to the manufacturer's instructions.
6.1.4. Western Blot Analysis
Serum samples as well as tumour samples were analysed by Western Blot. For each in vivo experiment the Western blots were done in triplicates.
Briefly, samples to be analysed are loaded on precast 4-15% polyacrylamide gel, at a rate of 0.1 μl for the plasma samples and 2 μl for the tumour lysates. Samples are migrated under heated, non-reduced conditions. Proteins are then transferred on nitrocellulose membranes using Trans-Blot® Turbo™ Midi Nitrocellulose Transfer Packs (2.5 A, 25 V, 7 min). After a 1 h, room-temperature saturation step in Tris buffered saline, 0.05% Tween 20, 1% milk (TBS-T 1% milk), membranes are incubated 1 h at room temperature with goat anti-hlgG-HRP, Fcγ Fragment specific (1/50000). After three washes, membranes labelling is analysed on ChemiDoc™ Touch Gel Imaging System.
6.1.5. Softwares
Densitometric analysis of western blot are carried out with Image Lab (Bio-Rad).
Statistical analyses are carried out with GraphPad Prism6.
6.2. Results:
6.2.1 In Vivo Stability of ICC in Mice Sera.
The stability of the ICC was evaluated in mice sera as a function of time.
The western blots were submitted to densitometric analysis. The graphic representations (
Overall, there was no significant difference between circulating c9G4 ICC and PDL1 ICC.
6.2.2. In Vivo Stability of ICC in Mice Tumour Samples.
The stability of the ICC was evaluated in mice tumour samples as a function of time.
The Western Blots were submitted to densitometric analysis, the graphic representations (
Both model ICC behaved similarly, i.e., the NanoLuc® counterpart was cleaved in RENCA tumours over a 48-hour period. PDL1 ICC cleavage was detected very quickly (less than 60% of uncleaved form in the tumour as early as 3 hours post-injection). At 24 hour-post injection, more than 80% of the total ICC present in the tumour was cleaved.
The cleavage of the c9G4 ICC was slower, with about 20% of the ICC cleaved in the tumour 6 hours post-injection. However, at 24 hours post injection, more than 80% of the total ICC present in the tumour is cleaved. Statistical analysis was performed on tumour-sequestered ICC. The amount of total tumour sequestered ICC was determined by adding of the signals obtained for the uncleaved ICC and the cleaved ICC at each time point.
Overall the PDL1-ICC was more sequestered in the RENCA tumours than the control c9G4 ICC.
These results demonstrate that a tumour-specific ICC is able to accumulate quickly in the tumour environment. After accumulation, the ICC is cleaved by the tumour-specific protease releasing specifically the cytokine in the tumour environment.
6.2.3. In Vivo Stability of ICC in Mice Sera Compared to Tumour Samples.
The behaviour of the two ICC was compared in plasma versus tumour samples in RENCA engrafted mice as a function of time.
7.1. Materials and Methods:
7.1.1 Materials and Methods.
Recombinant human IL15 was purchased from PeproTech.
The following ICC constructions were tested:
-
- NHS76-PVGLIG-IL15;
- H16/L16-PVGLIG-IL15; and
- c9G4-PVGLIG-IL15
The following controls were added: hIL15, MMP9, hIL15+MMP9 and individual antibodies.
7.1.2. Methods
The activity of three IL15-based immunocytokines, i.e. NHS76-IL15, H16/L16-IL15, and c9G4-IL15, was assessed on their ability to activate murine and human CD3′ T cells. The effect of hIL15+/−MMP9, MMP9 and individual antibodies was also evaluated using the same procedure.
Murine CD3+ T cells were isolated by negative selection from the spleen of balb/c mice (Charles River) using the murine pan T cells isolation kit II (Miltenyi, 130-095-130) according to the manufacturer's instructions. Two spleens per experiment were used for the T cells isolation.
Human peripheral blood mononuclear cells (PBMC) were isolated from fresh blood from healthy donors' cytapheresis rings by density gradient centrifugation. CD3 T cells were then purified by negative selection from PBMC using the human pan T cells isolation kit II (Miltenyi, 130-096-535).
Murine and human CD3+ T cells were seeded at 200 000 cells/well in culture medium, RPMI1640+10% FCS+2 mM L-glutamine+10 mM Hepes+1% Penicillin/streptomycin+0.1 mM beta-2-mercaptoethanol or RPMI 1640+10% FCS+1% L-glutamine+1% Sodium Pyruvate+1% Penicillin/streptomycin, respectively.
They were then treated with human IL-15 as a positive control at 100 and 200 ng/ml or with the different ICC constructions at 6 μg/ml with an equivalent of 200 ng/ml for IL-15 in the presence or not of MMP9. Cells were incubated at 37° C. 5% C02 and culture medium was refreshed after 3 days.
Activation of CD3+ T cells was monitored after 6 days of treatment through the expression of CD25 and CD69 surface markers. The expression of these markers was assessed by flow cytometry (Novocyte, ACEA). Cell culture supernatants were transferred into 96-wells plates for interferon-γ secretion analysis by flow cytometry (BD, CBA IFN Flex Set).
For each murine and human T cell activation experiment, the analysis was performed in triplicate; three human healthy donors were tested.
Data analysis was performed with the Prism 7.01 software (GraphPad).
7.2. Results
The ability of ICC to activate murine T cells was compared to controls. T cell activation was measured by T cell expression of CD69 or CD25.
As shown in
The same experiments were performed with human T cells from healthy donors. T cell activation was measured by T cells expression of CD69 or CD25. NHS76-PVGLIG-IL15, c9G4-PVLGIG-IL15 and H16L16-PVGLIG-IL15 induce expression of CD69 and CD25 in presence of MMP-9 but not in absence of MMP-9 (
This activation of T cells in presence of cleaved (but not of uncleaved ICC) was also measured by the secretion of IFN-γ by human T cells from two different donors.
Example 8: Attenuation of hIL36γ when Fused to an AntibodyTo evaluate and compare the biological activity of hIL36γ when part of an ICC or after cleavage by MMP9, IL36γ activity was assayed by measuring CXCL8 production in human epidermoid cancer A431 cell culture. This assay is based on the finding that IL36γ signaling pathway can trigger CXCL8 secretion.
8.1. Materials and Methods
8.1.1. Materials and Reagents
Recombinant human recombinant pro-MMP-9 was purchased from R&D Systems and activated by 1 mM 4-Aminophenylmercuric acetate (APMA) in buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2, 0.05% Brij-35 (w/v), pH7.5. APMA was then removed using Zeba™ Spin Desalting Columns (ThermoFisher Scientific) and APMA-free MMP-9 was immediately stored at −80° C. until needed. Recombinant human IL36γ was purchased from R&D Systems. IL8 was dosed using the Human IL8 DuoSet ELISA (R&D Systems).
8.1.2. Methods
To assess the activity of an IL36 γ-based immunocytokine (H16/L16-PVGLIG-IL-36), squamous carcinoma A431 cells were incubated for 24 hours with the ICC or the different control molecules. All the samples were tested in the presence (+MMP-9) or absence (−MMP-9) of recombinant hMMP-9 in an assay buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2) pH 7.5. The cell culture medium was then collected and hIL8 dosed by ELISA. The effect of recombinant hIL36γ and H16/L16 antibody (+/−hMMP-9) was also evaluated using the same procedure. Data analysis was performed with the Prism 7.01 software (GraphPad).
8.2. Results
The results of the hIL8 production in A431 cultures for the ICC and controls are presented in
As seen in
In the absence of MMP-9, the H16/L16-PVGLIG-hIL36γ ICC had no significant activity on hIL8 production. On the other hand, pre-treatment of the same molecules with MMP-9 resulted in activity recovery as observed through IL-8 production in a dose dependent manner.
In summary, the C-terminal linkage of hIL36γ using PVGLIG to H16/L16 antibody totally attenuates the cytokine activity. A MMP9 cleavage within the PVGLIG peptide restores it at a level comparable those of the free hIL36γ cytokine at an equivalent dose.
Example 9: Attenuation of hIFNα2a when Fused to an AntibodyIn order to evaluate and compare hIFNα2a biological activity when linked to the ICC or after cleavage by MMP9, IFNα2a activity was assayed with a cell-based luciferase reporter bioassay.
9.1. Materials and Methods
9.1.1. Materials and Reagents
Recombinant human recombinant pro-MMP-9 was purchased from R&D Systems and activated by 1 mM 4-Aminophenylmercuric acetate (APMA) in buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2), 0.05% Brij-35 (w/v), pH7.5. APMA was then removed using Zeba™ Spin Desalting Columns (ThermoFisher Scientific) and APMA-free MMP-9 was immediately stored at −80° C. until needed. Recombinant human IFNα2a was purchased from Pbl Assay Science (rhIFNα2a).
9.1.2. Methods
IFNα2a activity was monitored using the GloResponse™ ISRE-luc2P/HEK293 (Promega). The ISRE-luc2P/HEK293 cell line contains the firefly luciferase gene under the control of ISRE stably integrated into HEK293 cells. Binding of IFNα2a to its receptor leads to the activation of the JAK pathway, thereby promoting ISRE-dependent transcription of the luciferase gene. Luminescence can then be detected upon addition of a substrate and quantified with a luminometer.
The activity of three hIFNα2a-based immunocytokines was assessed: NHS76-PVGLIG-h IFNα2a, H16/L16-PVGLIG-hIFNα2a and c9G4-PVGLIG-hIFNα2a. The effect of recombinant hIFNα2a was also evaluated using the same procedure. All samples were incubated for one hour in presence (+MMP-9) or absence (−MMP-9) of recombinant hMMP-9 in an assay buffer containing 50 mM Tris, 150 mM NaCl, 10 mM CaCl2) pH 7.5.
Cleavage efficiency was controlled by SDS-PAGE analysis and samples were immediately stored at −20° C. until processing. ISRE-luc2P/HEK293 cells were treated with either cleaved or uncleaved ICC or controls overnight. Detection reagent (Bio-Glo™ luciferase Assay reagent) was then added and chemiluminescence intensity was recorded with a microplate reader (Infinite M1000Pro, Tecan). Data analysis was performed with the Prism 7.01 software (GraphPad).
For H16/L16-PVGLIG-hIFNα2a, cells were pre-treated or not with 10 μg of H16/L16 antibody lacking a cytokine fusion in order to saturate IGF1-R binding sites on the ISRE-luc2P/HEK293 cell surface.
9.2. Results
The results of the hIFNα2a activity assay for the three tested ICC are shown in
Both hIFNα2a and hIFNα2a+MMP-9 strongly induce signalling response, as shown by the luciferase expression, thus validating the experiment (
In the absence of MMP-9, each of the three assessed ICC: c9G4-PVGLIG-hIFNα2a (
It appears thus clearly from these experiments that hIFNα2a shows an attenuated activity when linked to any of the three antibodies. After cleavage of the ICC by MMP-9, hIFNα2a is liberated in its active form and is again able to fulfil its biological activity.
To evaluate and to compare the biological activity of hIL15, when linked to the ICC or after cleavage by uPA, a biological test of IL15 activity was used (Promega IL15 Bioassay)
10.1. Materials and Methods
10.1.1. Materials and Reagents
Recombinant urokinase (=uPA) was purchased from Abcam: ab92767 for the human. Recombinant human IL15 was purchased from PeproTech (200-15).
IL15 activity was monitored using the IL-15 Bioassay from Promega (Cat. #JA2015). This is a bioluminescent cell-based assay designed to measure IL-15 stimulation or inhibition using the STAT-5 response element as a readout. When IL-15 binds to its receptor, receptor-mediated pathway signalling induces luminescence that can be detected upon addition of a substrate and quantified with a luminometer.
10.1.2. Cleavage
Constructions to evaluate are incubated in PBS with uPA during 24 h at 37° C.
Cleavage efficiency was controlled by SDS-PAGE analysis and samples were immediately stored at −20° C. until processing.
10.1.2. Methods
IL15 cells were treated for 6 h with either cleaved or uncleaved ICC or controls. Detection reagent (Bio-Glo™ luciferase Assay reagent) was then added and chemiluminescence intensity was recorded with a microplate reader (Mithras, Berthold). Data analysis was performed with the Prism 7.01 software (GraphPad).
10.2. Results
The results of the hIL15 activity for the ICC and controls are presented in
Both rhIL15 and rhIL15+ uPA highly activated luminescence, thereby validating the experiment format. In the absence of uPA, the H16L16-SGRSA-hIL15 ICC had no significant IL15 activity. Pre-treatment of the same molecule with uPA resulted in a significant recovery of activity as observed through the STAT-5 activation (
In summary, the C-terminal linkage of hIL15 using SGRSA to H16/L16 antibody totally attenuates its activity. Cleavage by uPA within the SGRSA peptide significantly restores IL15 activity.
Example 11: Attenuation of hIFNα when Fused to an AntibodyTo evaluate and to compare the biological activity of hIFNα, when linked to the ICC or after cleavage by uPA, a biological test of IFNα activity was used (GloResponse ISRE-luc2P).
11.1. Materials and Methods
11.1.1. Materials and Reagents
Recombinant human urokinase (=uPA) was purchased from Abcam (ab92767). Recombinant human IFNα was purchased from PBL (11101-02). IFNα activity was monitored using the GloResponse ISRE-luc2P (Promega CS190701). This is a bioluminescent HEK293 cell-based assay designed to measure IFNα stimulation or inhibition using interferon-stimulated response element (ISRE) that drives transcription of the luciferase reporter gene luc2P (Photinus pyralis). When IFNα binds to its receptor, receptor-mediated pathway signalling induces luminescence that can be detected upon addition of a substrate and quantified with a luminometer.
11.1.2. Cleavage
Constructions to evaluate are incubated in PBS with uPA during 24 h at 37° C. Cleavage efficiency was controlled by SDS-PAGE analysis and samples were immediately stored at −20° C. until processing.
11.1.2. Methods
ISRE-luc2P/HEK293 cells were pre-treated for 1 h with 10 μg of anti IGF1R antibody in order to saturate IGF1R binding sites on the cell surface.
ISRE-luc2P/HEK293 cells were treated with either cleaved or uncleaved ICC or controls overnight. Detection reagent (Bio-Glo™ luciferase Assay reagent) was then added and chemiluminescence intensity was recorded with a microplate reader (Mithras, Berthold). Data analysis was performed with the Prism 7.01 software (GraphPad).
11.2. Results
The results of the hIFNα activity for the ICC and controls are presented in
11.2.1 H16L16-SGRSA-hIFNα
As seen in
In the absence of uPA, the IFNα EC50 of H16/L16-SGRSA-hIFNα ICC showed a 2-log reduction with only 75% maximal activity. Pre-treatment of the same molecule with uPA resulted in a similar activity to rhIFNα as determined by ISRE activation.
In summary, the C-terminal linkage of hIFNα using SGRSA to H16/L16 antibody attenuates its activity. Cleavage by uPA within the SGRSA peptide restores it at a level similar to that of the free hIFNα cytokine.
11.2.2 H16/L16-PSSRRRVN-hIFNα
As seen in
In the absence of uPA, the IFNα EC50 H16/L16-PSSRRRVN-hIFNα ICC displayed a 2-log reduction with a 75% maximal activity. Pre-treatment of the same molecule with uPA resulted in an activity recovery as observed through the ISRE activation.
In summary, the C-terminal linkage of hIFNα using PSSRRRVN to H16/L16 antibody attenuates its activity. Cleavage by uPA within the PSSRRRVN peptide restores activity to a level comparable to the free hIFNα cytokine.
Example 12: Attenuation of hCXCL10 when Fused to an AntibodyTo evaluate and compare the biological activity of hCXCL10 when linked to the ICC or after cleavage by uPA, a biological test of β-arrestin recruitment induced by CXCL10 binding to the CXCR3 receptor was performed (PathHunter eXpress CXCR3 CHOK1 β-arrestin GPCR assay).
12.1. Materials and Methods
12.1.1. Materials and Reagents
Recombinant human urokinase (=uPA) was purchased from Abcam (ab92767). Recombinant human CXCL10 was purchased from Peprotech (300-12). CXCL10 activity was monitored using the PathHunter eXpress CXCR3 CHOK1 β-arrestin GPCR assay (DiscoverX 93-0271E2). This is a bioluminescent CHO cell-based assay designed to measure β-arrestin recruitment induced by CXCL10 binding to the CXCR3 receptor.
Activation of the GPCR-PK induces β-arrestin-EA recruitment, forcing complementation of the two β-galactosidase enzyme fragments (EA and PK). The resulting functional enzyme hydrolyzes substrate to generate a chemiluminescent signal that can be detected upon addition of a substrate and quantified with a luminometer.
12.1.2. Cleavage
Constructions to evaluate are incubated in PBS with uPA during 1 h at 37° C. Cleavage efficiency was controlled by SDS-PAGE analysis and samples were immediately stored at −20° C. until processing.
12.1.2. Methods
CHO-K1 CXCR3 cells were treated with either cleaved or uncleaved ICC or controls for 1 h30. Detection reagent was then added and chemiluminescence intensity was recorded 1 h later with a microplate reader (Mithras, Berthold). Data analysis was performed with the Prism 7.01 software (GraphPad).
12.2. Results
The results of the hCXCL10 activity for the ICC and controls are presented in
12.2.1 9G4-SGRS-CXCL10
Both recombinant hCXCL10 and recombinant hCXCL10+uPA led to a strong activation of the luminescence signal, thereby validating the experiment format. In the absence of uPA, the 9G4-SGRS-CXCL10 ICC had no significant activity. Pre-treatment of the same molecules with uPA resulted in an activity recovery as observed through the CXCR3 β-arrestin recruitment (
In summary, the C-terminal linkage of hCXCL10 using the SGRS linker to the 9G4 antibody attenuates its activity. Cleavage by uPA within the SGRS peptide restores CXCL10 activity almost to that of the free hCXCL10 cytokine.
12.2.2 NHS76-SGRS-CXCL10
Both recombinant hCXCL10 and recombinant hCXCL10+uPA led to a strong activation of the luminescence signal, thereby validating the experiment format. In the absence of uPA, the NHS76-SGRS-CXCL10 ICC had no significant activity. Pre-treatment of the same molecule with uPA resulted in a partial recovery of activity as observed through the CXCR3 β-arrestin recruitment (
In summary, the C-term linkage of hCXCL10 using SGRS to the NHS76 antibody attenuates its activity. Cleavage by uPA within the SGRS peptide restores CXCL10 activity.
12.2.3 H16L16-SGRS-CXCL10
Both recombinant hCXCL10 and recombinant hCXCL10+uPA led to a strong activation of the luminescence signal, thereby validating the experiment format. In the absence of uPA, the H16/L16-SGRS-CXCL10 ICC had no significant activity. Pre-treatment of the same molecule with uPA resulted in a partially recovery activity as observed through the CXCR3 β-arrestin recruitment (
In summary, the C-term linkage of hCXCL10 using SGRS to H16/L16 antibody attenuates its activity. Cleavage by uPA within the SGRS peptide restores CXCL10 activity.
Claims
1. A fusion protein comprising:
- (i) an antibody or antigen-binding fragment thereof fused to
- (ii) a cleavable peptide linker, and
- (iii) a cytokine, or functional fragments thereof.
2. The fusion protein of claim 1, wherein the cytokine is IL-15, CXCL10, IL-36, or IFN-α.
3. The fusion protein of claim 1 or 2, wherein the cleavable peptide linker comprises a protease cleavage site.
4. The fusion protein of any one of claims 1 to 3, wherein the protease cleavage site is cleaved by a matrix metalloproteinase or by uPA.
5. The fusion protein of claim 4, wherein the matrix metalloproteinase is MMP-2, MMP-9.
6. The fusion protein of any one of claims 1 to 5, wherein the cleavable peptide linker has a sequence selected from the group consisting of: GPLGIAGQ, GPLGLWAQ, GPLGMLSQ, PLGLAG, PVGLIG, SGRS, SGRSA, and PSSRRRVN.
7. The fusion protein of any one of claims 1 to 6, wherein the antibody or antigen-binding fragment thereof is selected from the group consisting of polyclonal antibodies, monoclonal antibodies, chimeric antibodies, humanised antibodies, scFv, single domain antibodies (e.g., shark and camelid antibodies), maxibodies, minibodies, intrabodies, diabodies, triabodies, tetrabodies, v-NAR and bis-scFv.
8. The fusion protein of any one of claims 1 to 7, wherein the cytokine is a murine or human, preferably a human cytokine, or functional fragment thereof.
9. The fusion protein of any one of claims 1 to 8, wherein:
- (i) the cytokine, or functional fragment thereof is fused to the cleavable peptide linker, and
- (ii) the cleavable peptide linker is used N-terminally or C-terminally to the antibody or antigen-binding fragment thereof.
10. The fusion protein of any one of claims 1 to 9, wherein:
- (i) the cytokine, or functional fragment thereof is fused to the cleavable peptide linker, and
- (ii) the cleavable peptide linker is fused N-terminally or C-terminally to the heavy chain of the antibody or antigen-binding fragment thereof.
11. The fusion protein of any one of claims 1 to 10 for use in therapy.
12. The fusion protein of any of claims 1 to 10 for use in the treatment of cancer in a mammal, preferably in a human.
13. The fusion protein for use according to claim 12, wherein said use comprises activation of immune cell, preferably T-cells or monocytes, of said mammal.
14. A pharmaceutical composition comprising at least one fusion protein according to any one of claims 1 to 9 and optionally a pharmaceutically acceptable excipient.
15. A method of selecting a cytokine or a variant thereof, said method comprising:
- (i) providing a fusion protein as claimed in any one of claims 1 to 10, said fusion protein comprising the cytokine or variant thereof to be tested;
- (ii) contacting said fusion protein with the relevant protease; and
- (iii) detecting the activity of said cytokine.
16. A method for identifying a cleavable peptide linker, said method comprising:
- (i) providing a fusion protein as claimed in any one of claims 1 to 10, said fusion protein comprising the peptide cleavable linker to be tested;
- (ii) contacting said fusion protein with the relevant protease; and
- (iii) detecting the cleavage of said fusion protein.
17. The method of claim 16, wherein step (iii) of said method comprises measuring the activity of the cytokine of said fusion protein.
Type: Application
Filed: Sep 30, 2019
Publication Date: Feb 17, 2022
Applicant: PIERRE FABRE MEDICAMENT (BOULOGNE-BILLANCOURT)
Inventors: Peter LOWE (CHAZEY BONS), Jean-François HAEUW (BEAUMONT), Alicia CONTET (SAINT JULIEN EN GENEVOIS), Céline BERTAUX (VIRY), Barbara AKLA (CRUSEILLES), Marie-Claire JANIN-BUSSAT (SAINT JULIEN EN GENEVOIS)
Application Number: 17/280,275
