Patents Issued in November 30, 2017
  • Publication number: 20170342367
    Abstract: There is provided an apparatus comprising a receptacle to receive a sample. A sample dispenser dispenses the sample into the receptacle and an image capture device captures an image of the sample in the receptacle. Processing circuitry processes the image to determine whether the receptacle contains zero cells, exactly one cell, or more than one cell. In response to the processor determining that the receptacle contains zero cells, the processing circuitry causes the sample dispenser to dispense a further sample into the receptacle.
    Type: Application
    Filed: May 23, 2017
    Publication date: November 30, 2017
    Inventors: Aaron Figg, Yonggang Jiang
  • Publication number: 20170342368
    Abstract: This disclosure relates to a device for separating regenerative and/or adult stem cells from a fatty tissue taken from a biological structure. In one embodiment, the device includes a container for holding a substance mixture, the substance mixture including the fatty tissue and the regenerative and/or adult stem cells, and the container including at least two chambers separated from each other by at least one membrane. The device additionally includes a substance mixture feeding facility configured to introduce the substance mixture into the container, a rinsing agent feeding facility configured to introduce a fluid into the container, a stem cell removal facility configured to remove separated stem cells from the container, a rinsing agent removal facility configured to remove a substance mixture from the container that has been at least partially depleted of regenerative and/or adult stem cells, and a specifically permeable membrane.
    Type: Application
    Filed: April 14, 2016
    Publication date: November 30, 2017
    Inventors: Inge Matthiesen, Konrad-Wenzel Winkler
  • Publication number: 20170342369
    Abstract: A method of culturing Antrodia cinnamomea with high Triterpenoids includes mixing a malt extract, glucose, peptone, agar, and a mushroom's extract with distilled water to obtain a culture medium; providing the culture medium to a high-pressure sterilization machine for sterilization to obtain a sterilized culture medium; providing the sterilized culture medium to an incubator in a disinfection environment to obtain a solidified culture medium after a predetermined time; transplanting Antrodia cinnamomeas strains to the solidified culture medium at separated positions; and exposing the solidified culture medium under a beam.
    Type: Application
    Filed: August 14, 2017
    Publication date: November 30, 2017
    Inventors: Ming-Hsi Chuang, Chu-Ting Liu, I-Lung Yu, Lin-Hsiang Chuang
  • Publication number: 20170342370
    Abstract: A method of making a flowable, dried agglomerated nutrient medium is provided. The method comprises introducing a nutrient component comprising a powdered nutrient, and an agglomeration liquid, into an agglomerator comprising a flow-through-type agglomeration chamber, wet-massing the nutrient component with the agglomeration liquid in the agglomeration chamber for a predetermined period of time to form agglomerated nutrient medium particles, and exposing the agglomerated nutrient medium particles to drying conditions for a period of time to form the dried, agglomerated nutrient medium. The nutrient component facilitates the growth of a microorganism. Compositions, articles, and kits comprising the flowable, dried agglomerated nutrient medium are also provided.
    Type: Application
    Filed: August 11, 2017
    Publication date: November 30, 2017
    Applicant: 3M INNOVATIVE PROPERTIES COMPANY
    Inventors: JIE J. LIU, WENSHENG XIA
  • Publication number: 20170342371
    Abstract: Cell culture media, concentrated media and feeds, methods of manufacturing cell culture media and feeds, and methods of culturing cells are provided. One or more small peptides, including dipeptides are added to the cell culture media to provide improved stability and improved conditions for culturing cells.
    Type: Application
    Filed: July 24, 2017
    Publication date: November 30, 2017
    Inventors: Shawn BARRETT, Scott JACOBIA
  • Publication number: 20170342372
    Abstract: The present invention relates to dry cell culture media comprising amino acid components of certain particle size. Some dry powder cell culture media show poor dissolving properties and result in turbid solutions when they are dissolved in aqueous solutions. Using amino acid components of certain particle sizes significantly reduces that problem.
    Type: Application
    Filed: November 13, 2015
    Publication date: November 30, 2017
    Applicant: Merck Patent GmbH
    Inventor: Joerg VON HAGEN
  • Publication number: 20170342373
    Abstract: In one example, the present invention refers to a method of making or producing a self-supporting cellular construct having a continuous channel within its central cavity, comprising the steps of providing a mould with a central opening, wherein the mould encloses a volume around the central opening (hole) capable of housing a plurality of cells. Each of the plurality of self-supporting cellular constructs, having a central opening in a series adjacent to one another such, is placed so that the central opening of each of the self-supporting cellular constructs having a central opening is aligned to one another to thereby form, for example, a continuous channel within its central cavity.
    Type: Application
    Filed: December 30, 2015
    Publication date: November 30, 2017
    Inventors: Andrew Chwee Aun WAN, Meng Fatt LEONG, Tze Chiun LIM, Hong Fang LU
  • Publication number: 20170342374
    Abstract: A method for micro-tissue encapsulation of cells includes coating a tissue scaffold stamp with an extracellular matrix compound; depositing the tissue scaffold stamp onto a thermoresponsive substrate; seeding the tissue scaffold stamp with a cell culture; incubating the cell culture on the tissue scaffold stamp at a temperature that is specified, wherein the cell culture forms a cell patch that is attached to the extracellular matrix compound; removing the thermoresponsive substrate by lowering the temperature; removing the tissue scaffold stamp from the cell patch to form a micro-tissue structure by dissolving the tissue scaffold stamp in a solvent; folding the micro-tissue structure by suspending the micro-tissue in the solvent to enable the cell patch to fold the micro-tissue structure; collecting the folded micro-tissue structure from the solvent; and administering the folded micro-tissue structure to an organism.
    Type: Application
    Filed: May 31, 2017
    Publication date: November 30, 2017
    Inventors: Rachelle Simko, Adam Feinberg
  • Publication number: 20170342375
    Abstract: The present invention relates to a cell culture support comprising a substrate and a polymeric blend layer bound to the substrate. The polymeric blend layer comprises at least one thermoresponsive polymer and at least one coupling agent. The coupling agent is a non-protein coupling agent that has functional thiol, ester, epoxy, or aldehyde groups. The cell culture support further includes cells supported by the polymeric blend layer, wherein the thermoresponsive polymer provides for temperature induced detachment of the cells and/or cell sheets.
    Type: Application
    Filed: March 14, 2017
    Publication date: November 30, 2017
    Inventors: Abdullah Alghunaim, Bi-min Zhang Newby
  • Publication number: 20170342376
    Abstract: A fiber structure can be used as a cell scaffold material, which fiber structure includes a multifilament formed by bundling monofilaments having an average fiber diameter of 1 to 15 ?m, wherein each of the monofilaments satisfies Formula (1): (Y/X)×100>50 . . . (1) wherein, in Formula (1), X represents the number of monofilaments for which the average crossing angle is investigated, and Y represents the number of monofilaments having an average crossing angle of not more than 25° in X.
    Type: Application
    Filed: October 30, 2015
    Publication date: November 30, 2017
    Inventors: Koji Kadowaki, Chisa Kuga, Masaki Fujita, Kazuhiro Tanahashi, Satoshi Yamada, Takayuki Kaneko, Hiroshi Tsuchikura
  • Publication number: 20170342377
    Abstract: A cell culture carrier includes a first substrate. The first substrate has a plurality of wells on an upper surface and includes a porous body. The porous body has pores with an average pore diameter of 0.05 ?m or more and 10 ?m or less, and has a porosity of 25% or more and 50% or less. The first substrate has a thickness from a lowermost portion of the well to a lower surface of the substrate of 50 ?m or more and 10 mm or less.
    Type: Application
    Filed: May 26, 2017
    Publication date: November 30, 2017
    Inventors: Takafumi IMAIZUMI, Shinya HASHIMOTO
  • Publication number: 20170342378
    Abstract: The present disclosure is related to methods for forming a stem cell bank. The methods include obtaining a first stem cell from a multi-cell fertilized embryo, expanding the first stem cell into two or more descendant stem cells, and storing at least one of the descendant stem cells to form the stem cell bank. Also disclosed is a kit that can be used for making the stem cell bank during in vitro fertilization. If desired, the HLA serotype of the stem cells can be determined prior to storage.
    Type: Application
    Filed: August 1, 2017
    Publication date: November 30, 2017
    Inventors: Karl Tryggvason, Kristian Tryggvason, Outi Hovatta
  • Publication number: 20170342379
    Abstract: The present invention relates to a composition and method for assisted reproductive technology in mammals. In particular, the present invention provides compositions and methods for in vivo maturation of an immature cumulus oocyte complex (COC), thereby enhancing the embryology outcome.
    Type: Application
    Filed: December 21, 2015
    Publication date: November 30, 2017
    Applicant: Vrije Universiteit Brussel
    Inventors: Sergio Romero, Flor Sanchez, Johan Smitz
  • Publication number: 20170342380
    Abstract: The present invention relates to methods of treating or ameliorating certain neurodegenerative disorders (namely, dysmyelinating and demyelinating disorders) in patients in need of such treatment or amelioration. The invention provides methods of treating or ameliorating a patient in need of such treatment and includes the administration to the patient of: (a) thyroid hormones or thyroid hormone analogues; (b) cell replacement therapies involving the use of homogenous Oligodendrocyte Precursor Cells derived from embryonic stem cells that have been treated with thyroid hormones or thyroid hormone analogues; (c) gene therapy to correct mutated genes in vivo; or (d) a combination of two or more of (a), (b) and (c). The invention also provides compositions and formulations of thyroid hormones and thyroid hormone analogues for use in treating or ameliorating such disorders.
    Type: Application
    Filed: December 24, 2015
    Publication date: November 30, 2017
    Inventors: Steven Petratos, Michael Farzad Azari, Jae Young Lee, Min Young Kim
  • Publication number: 20170342381
    Abstract: A method for expanding a population of ?? T-cells is provided in which isolated activated Peripheral Blood Mononuclear Cells (PBMCs) are cultured in a medium comprising transforming growth factor beta (TGF-?) under conditions in which the production of effector ?? T-cells having therapeutic activity against malignant disease is favored. The use of TGF-? in the production of effector cells in particular V?9V?2 T-cells is also described and claimed.
    Type: Application
    Filed: December 4, 2015
    Publication date: November 30, 2017
    Inventors: John MAHER, Ana Catarina PARENTE PEREIRA PURI, Richard Esmond BEATSON
  • Publication number: 20170342382
    Abstract: An aluminoborate glass composition, including B2O3, Al2O3, P2O5, Na2O, and CaO, as defined herein. Also disclosed are bioactive compositions including the disclosed aluminoborate glass composition, a suitable fluid, and at least one live cell. Also disclosed is method of limiting the amount of boron released into an aqueous solution from a disclosed aluminoborate-containing glass composition as defined herein. Also disclosed is a method of proliferating cells on a bioactive substrate as defined herein.
    Type: Application
    Filed: May 23, 2017
    Publication date: November 30, 2017
    Inventors: Huayun Deng, Ye Fang, Qiang Fu, John Christopher Mauro
  • Publication number: 20170342383
    Abstract: A bioactive glass-ceramic composition as defined herein. Also disclosed are methods of making and using the disclosed compositions.
    Type: Application
    Filed: May 23, 2017
    Publication date: November 30, 2017
    Inventors: Huayun Deng, Qiang Fu, John Christopher Mauro
  • Publication number: 20170342384
    Abstract: Provided are methods of isolating pericyte progenitor cells from pluripotent stem cells such as embryonic stem cells and induced pluripotent stem cells, by isolating CD105+, CD73+ and/or CD105+/CD73+ cells from embryoid bodies and optionally by enriching the cells with CD31? cells. Also provided are methods of isolating endothelial cells and co-derivation of pericyte and endothelial cells progenitor cells from embryoid bodies, and methods of differentiating same for various therapeutic applications. In addition, the invention provides an isolated pericyte progenitor cell having an expression marker signature of CD105+/CD73+CD31?/alpha SMA?/CD133?/Flk-1?.
    Type: Application
    Filed: July 24, 2017
    Publication date: November 30, 2017
    Applicant: Technion Research & Development Foundation Limited
    Inventors: Ayelet DAR-OAKNIN, Joseph ITSKOVITZ-ELDOR
  • Publication number: 20170342385
    Abstract: The invention relates to improved culture methods for expanding epithelial stem cells and obtaining organoids, to culture media involved in said methods, and to uses of said organoids.
    Type: Application
    Filed: November 27, 2015
    Publication date: November 30, 2017
    Applicant: Koninklijke Nederlandse Akademie Van Wetenschappen
    Inventors: Lars Norman Sachs, Ana Gracanin, Jarno Drost
  • Publication number: 20170342386
    Abstract: The disclosure relates to a method of reprogramming one or more somatic cells, e.g., partially differentiated or fully/terminally differentiated somatic cells, to a less differentiated state, e.g., a pluripotent or multipotent state. In further embodiments the invention also relates to reprogrammed somatic cells produced by methods of the invention, to uses of said cells, and to methods for identifying agents useful for reprogramming somatic cells.
    Type: Application
    Filed: May 26, 2017
    Publication date: November 30, 2017
    Inventors: Rudolf Jaenisch, Yaqub Hanna, Marius Wernig, Christopher J. Lengner, Alexander Meissner, Oliver Tobias Brambrink, G. Grant Welstead, Ruth Foreman
  • Publication number: 20170342387
    Abstract: The present invention relates to a novel porcine pestivirus, to proteins of the virus and to vaccines based upon the virus and proteins thereof. The invention also relates to DNA fragments comprising a gene of the virus and to DNA vaccines based upon genes of the virus. Furthermore the invention relates to antibodies that are reactive with the novel virus and to diagnostic tests for the detection of the virus or antibodies against the virus.
    Type: Application
    Filed: December 18, 2015
    Publication date: November 30, 2017
    Applicant: Intervet Inc.
    Inventors: Ad de Groof, Lars Guelen, Carla Christina Schrier, Martin Deijs, Cornelia Maria van der Hoek
  • Publication number: 20170342388
    Abstract: The disclosure relates to acyl-ACP reductase (AAR) enzyme variants that result in improved fatty aldehyde and fatty alcohol production when expressed in recombinant host cells. The disclosure further relates to methods of making and using such AAR variants for the production of fatty alcohol compositions having particular characteristics.
    Type: Application
    Filed: June 13, 2017
    Publication date: November 30, 2017
    Inventors: Mathew Rude, Na TRINH, Andreas Schirmer, Jacob GANO
  • Publication number: 20170342389
    Abstract: The present invention pertains to an isolated P450 enzyme comprising or consisting of an amino acid sequence at least 80% identical to SEQ ID NO: 1, wherein said sequence comprises a threonine at position corresponding to position 225 and/or an aspartic acid mutation at position corresponding to position 289. The invention also concerns an isolated nucleic acid comprising a sequence encoding said enzyme, a vector comprising said nucleic acid, and a host cell containing said nucleic acid or said vector. Methods for preparing said enzyme and methods for producing steroid hormone precursors using the enzyme or the host cells featured in the invention are also provided.
    Type: Application
    Filed: August 17, 2017
    Publication date: November 30, 2017
    Inventors: Marine BERTIN, Bruno DUMAS
  • Publication number: 20170342390
    Abstract: The present invention relates to cell lines that are genetically modified to overexpress a ?-galactoside ?-2,3-sialyltransferase 1 (ST3Gal1), preferably human ST3Gal1, which can be used for the production of recombinant glycoproteins having highly or fully sialylated O-linked GalNAc glycans (GalNAc O-glycans), preferably core 1 GalNAc O-glycans, as well as to respective recombinant glycoproteins. Further, the present invention relates to respective methods of expressing recombinant glycoproteins, methods of increasing the degree of sialylation of recombinant glycoproteins, and methods of decreasing the micro-heterogeneity of GalNAc O-glycans. Finally, the present invention relates to respective uses of the above cell lines for the production of recombinant glycoproteins, for increasing the degree of sialylation of recombinant glycoproteins, and for decreasing the micro-heterogeneity of O-linked GalNAc glycans of recombinant glycoproteins.
    Type: Application
    Filed: December 15, 2015
    Publication date: November 30, 2017
    Applicant: Cevec Pharmaceutical GmbH
    Inventors: Silke Wissing, Jens Wölfel, Nicole Faust
  • Publication number: 20170342391
    Abstract: The present invention relates enzyme composition comprising a cellulolytic preparation and an acetylxylan esterase (AXE); and the used of cellulolytic enzyme compositions for hydrolyzing acetylated cellulosic material. Finally the invention also relates to processes of producing fermentation products from acetylated cellulosic materials using a cellulolytic enzyme composition of the invention.
    Type: Application
    Filed: June 21, 2017
    Publication date: November 30, 2017
    Applicant: Novozymes A/S
    Inventors: Prashant Iyer, Armindo Ribeiro Gaspar, James Croonenberghs, Thomas P. Binder
  • Publication number: 20170342392
    Abstract: The present invention relates to a method for controlling a glycosylation pattern of a recombinant glycoprotein, comprising culturing a cell comprising polynucleotide encoding a recombinant glycoprotein in a culture medium comprising insulin.
    Type: Application
    Filed: December 30, 2015
    Publication date: November 30, 2017
    Applicant: LG CHEM, LTD.
    Inventors: Kyu Yong KIM, Soo Hyun RYU, Sam Sook SEOL, Sun Young KIM
  • Publication number: 20170342393
    Abstract: The present invention relates to glucoamylase variants having improved thermostability. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.
    Type: Application
    Filed: August 15, 2017
    Publication date: November 30, 2017
    Applicant: NOVOZYMES A/S
    Inventors: Esben Peter Friis, Leonardo De Maria, Jesper Vind, Thomas A. Poulsen, Allan Svendsen, Steffen Danielsen, Rolf T. Lenhard, Henrik Friis-Madsen, Lars K. Skov
  • Publication number: 20170342394
    Abstract: The present invention relates to isolated polypeptides having protease activity and isolated nucleic acid sequences encoding the proteases. The invention also relates to nucleic acid constructs, vectors, and host cells, including plant and animal cells, comprising the nucleic acid sequences, as well as methods for producing and using the proteases, in particular the use of the proteases in animal feed.
    Type: Application
    Filed: August 10, 2017
    Publication date: November 30, 2017
    Applicant: Novozymes A/S
    Inventors: Mary Ann Stringer, Tine Hoff, Peter Rahbek Oestergaard, Katrine Fruergaard Pontoppidan
  • Publication number: 20170342395
    Abstract: Chromatographic processes and systems for purifying a botulinum toxin from an APF fermentation medium.
    Type: Application
    Filed: August 7, 2017
    Publication date: November 30, 2017
    Inventor: Hui Xiang
  • Publication number: 20170342396
    Abstract: The present invention relates to protease variants and methods for obtaining protease variants. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.
    Type: Application
    Filed: December 18, 2015
    Publication date: November 30, 2017
    Applicant: NOVOZYMES A/S
    Inventors: Jens Nielsen, Pernille Hede, Esben Peter Friis
  • Publication number: 20170342397
    Abstract: A process for refolding recombinant chymotrypsin produced from prokaryote host cells is described. In particular, the present invention provides a process for refolding recombinant chymotrypsin produced from E. coli is described.
    Type: Application
    Filed: November 13, 2015
    Publication date: November 30, 2017
    Applicant: Merck Sharp & Dohme Corp.
    Inventors: Mark C. Sleevi, Jack Lile, Bryn Grimison
  • Publication number: 20170342398
    Abstract: Microfluidic devices and methods for the encapsulation of particles within liquid droplets are disclosed. The new methods and devices form 1-100 picoliter-size monodisperse droplets containing the particles, such as single cells, encapsulated in individual liquid droplets. The particles can be encapsulated in droplets of a fluid by passing a fluid containing the particles through a high aspect-ratio microchannel to order the particles in the fluid, followed by forming the fluid into droplets. The resulting fraction of the liquid droplets with a single particle (e.g., a cell) is higher than the corresponding fraction of single-particle liquid droplets predicted by Poisson statistics.
    Type: Application
    Filed: June 12, 2017
    Publication date: November 30, 2017
    Inventors: Jon F. Edd, Mehmet Toner, Dino DiCarlo, Daniel Irimia
  • Publication number: 20170342399
    Abstract: The presently disclosed subject matter provides methods and kits for purifying nucleic acids from blood plasma using a functionalized solid phase comprising a silica or polymer backbone and non-chaotropic and ethanol-free buffers.
    Type: Application
    Filed: November 6, 2015
    Publication date: November 30, 2017
    Applicant: THE JOHNS HOPKINS UNIVERSITY
    Inventors: WILLIAM O. OSBURN, STUART C. RAY
  • Publication number: 20170342400
    Abstract: A three-layer complex including at least one magnetic compound, at least one inorganic silicate and at least one compound having an affinity for the at least one magnetic compound and/or the at least one inorganic silicate. The three-layer complex, and associated methods, may be applicable in the field of in vitro diagnostics.
    Type: Application
    Filed: December 21, 2015
    Publication date: November 30, 2017
    Applicant: BIOMÉRIEUX
    Inventors: Arnaud BURR, Ali LAAYOUN, Alain LAURENT, Raphäel VEYRET
  • Publication number: 20170342401
    Abstract: In accordance with one embodiment of the present invention, there is disclosed an apparatus for nucleic acid extraction and an operation method thereof. The apparatus for nucleic acid extraction includes: a first rack having a plurality of sample tube receivers arranged in a circle; a second rack having a plurality of elution tube receivers arranged in a circle on an outer side thereof and a washing solution receiver positioned at the center thereof, a part of the washing solution receiver extending outwards to have projections formed in alternation with a plurality of the elution tube receivers; a main body having the first and second racks arranged to position the first rack on the top of the second rack; a rotational driver for separately rotating the first and second racks; a dispenser for separately dispensing a washing solution and an eluting solution into sample tubes; and a pressurizer for maintaining the inside of the sample tubes under raised pressure.
    Type: Application
    Filed: December 22, 2015
    Publication date: November 30, 2017
    Inventors: Sung Woo KIM, Jun HUR, Eun-Sub KIM, Chi-Woo AN, Song Gyun JUNG, Jae Young BYUN, Duck Joong KIM, Mi Ree KIM, Do Hee KIM, Kang CHOI, Jin Pyung KIM
  • Publication number: 20170342402
    Abstract: The invention provides methods for isolating RNA from whole urine and urine fractions for the diagnosis of prostate cancer and/or benign prostate hyperplasia. An exemplary method for diagnosing prostate cancer in an individual, said method comprises: (a) determining the amount of RNA encoding one or more diagnostic genes in the soluble urine fraction of a urine sample obtained from said individual; (b) comparing the amount of said RNA to a reference value for said one or more diagnostic genes, wherein said reference value is derived from the amount of RNA encoding said one or more diagnostic genes in one or more individuals that do not have prostate cancer; and (c) diagnosing said individual as having prostate cancer when the amount of said RNA is greater than said reference value.
    Type: Application
    Filed: May 12, 2017
    Publication date: November 30, 2017
    Applicant: Quest Diagnostics Investments Incorporated
    Inventor: Heather R. Sanders
  • Publication number: 20170342403
    Abstract: The present invention inter alia pertains to a method for generating or selecting a eukaryotic host cell expressing a desired level of a polypeptide of interest, comprising: a) providing a plurality of eukaryotic host cells comprising a heterologous nucleic acid comprising at least one cassette (Cas-POI) comprising at least a first polynucleotide (Pn-POI) encoding the polypeptide of interest, at least one stop codon downstream of the first polynucleotide, and a second polynucleotide downstream of the stop codon encoding an immunoglobulin transmembrane anchor or a functional variant thereof; b) cultivating the eukaryotic host cells to allow expression of the polypeptide of interest such that at least a portion of the polypeptide of interest is expressed as a fusion polypeptide comprising the immunoglobulin transmembrane anchor or a functional variant thereof, wherein said fusion polypeptide is being displayed on the surface of said host cell; c) selecting at least one eukaryotic host cell based upon the pre
    Type: Application
    Filed: August 8, 2017
    Publication date: November 30, 2017
    Applicant: NOVARTIS AG
    Inventors: Thomas Jostock, Hans-Peter Knopf, Burkhard Wilms, Audrey Nommay
  • Publication number: 20170342404
    Abstract: The present disclosure provides compositions, methods, systems, and devices for polynucleotide processing. Such polynucleotide processing may be useful for a variety of applications, including polynucleotide sequencing.
    Type: Application
    Filed: March 27, 2017
    Publication date: November 30, 2017
    Inventors: Benjamin Hindson, Serge Saxonov, Kevin Ness, Paul Hardenbol, Christopher Hindson, Donald Masquelier, Mirna Jarosz, Michael Schnall-Levin
  • Publication number: 20170342405
    Abstract: The present disclosure relates to compositions, methods and kits for labeling an internal sequence of a target nucleic acid molecule with molecular barcodes. In some embodiments, the methods comprise intramolecular circulation of a labeled target nucleic acid molecule. Further provided methods for generating sequencing libraries comprising overlapping fragments covering the full length of a target nucleic acid molecule, sequencing the libraries using the methods disclosed herein, and methods of analyzing sequencing results therefrom.
    Type: Application
    Filed: May 16, 2017
    Publication date: November 30, 2017
    Inventors: Glenn Fu, Eleen Shum
  • Publication number: 20170342406
    Abstract: The present invention provides methods for creating an array of features on a surface based on content transferred from a plurality of beads to the surface. Nucleic acid content can be transferred using a method including the steps of (a) providing a surface having one or more primer oligonucleotides attached to the surface; (b) providing a pool of beads, wherein beads in the pool have a plurality of templates attached thereto, the plurality comprising multiple copies of a single nucleic acid template sequence; (c) arraying the beads onto the surface by hybridizing the templates to the primer oligonucleotides; and (d) extending the primers to produce copies of the templates attached to the surface.
    Type: Application
    Filed: June 12, 2017
    Publication date: November 30, 2017
    Applicant: Illumina Cambridge Limited
    Inventors: Roberto Rigatti, Geoffrey Paul Smith, Jonathan Mark Boutell
  • Publication number: 20170342407
    Abstract: Described is a method for identifying a gene which mediates antibiotic sensitivity or resistance in a target bacterium, the method comprising the steps of: (a) generating a pool of mutant target bacteria by transposon mutagenesis with an activating transposon (TnA), wherein the TnA comprises an outward-facing promoter (TnAP) capable of increasing transcription of a gene at or near its insertion site in the DNA of said target cells; (b) generating a control microdroplet library by encapsulating individual members of the pool of step (a) in microdroplets, the microdroplets comprising a volume of aqueous growth media suspended in an immiscible carrier liquid, each microdroplet comprising a single mutant target cell; (c)generating a test microdroplet library by encapsulating individual members of the pool of step (a) in microdroplets, the microdroplets comprising a volume of aqueous growth media containing the antibiotic and suspended in an immiscible carrier liquid, each microdroplet comprising a single mutant t
    Type: Application
    Filed: June 8, 2017
    Publication date: November 30, 2017
    Applicant: DISCUVA LIMITED
    Inventors: David Hugh Williams, John Richard Wain, Stuart Robert Wood
  • Publication number: 20170342408
    Abstract: The present disclosure relates to methods for determining recombination diversity at a genomic locus of interest. The method includes fragmenting nucleic acids isolated from immune cells, ligating adaptors to the fragmented or amplified nucleic acids, and selectively amplifying nucleic acids containing a recombined junction at the genomic locus of interest. Selective amplification is achieved by using a first primer that hybridizes to an adaptor sequence and a second primer that hybridizes at a constant region downstream of the recombined junction. The selectively amplified nucleic acids may be sequences and analyzed to determine recombination diversity at the genomic locus.
    Type: Application
    Filed: November 20, 2015
    Publication date: November 30, 2017
    Inventors: Anitha Devi Jayaprakash, Andrew Chess, Ravi Sachidanandam
  • Publication number: 20170342409
    Abstract: A method of ligating DNA molecules, wherein the DNA molecules are in a hybrid with an RNA molecule, including the steps of providing DNA molecules that are in a RNA:DNA hybrid with an RNA molecule, and ligating the DNA molecules to each other with a double strand specific ligase
    Type: Application
    Filed: August 10, 2017
    Publication date: November 30, 2017
    Inventors: Alexander Seitz, Pamela Moll, Magdalena Anna Napora
  • Publication number: 20170342410
    Abstract: Provided is an improved design of shRNA based on structural mimics of miR-451 precursors. These miR-451 shRNA mimics are channeled through a novel small RNA biogenesis pathway, require AGO2 catalysis and are processed by Drosha but are independent of DICER processing. This miRNA pathway feeds active elements only into Agog because of its unique catalytic activity. These data demonstrate that this newly identified small RNA biogenesis pathway can be exploited in vivo to produce active molecules.
    Type: Application
    Filed: March 6, 2017
    Publication date: November 30, 2017
    Applicant: Cold Spring Harbor Laboratory
    Inventors: Gregory J. Hannon, Sihem Cheloufi
  • Publication number: 20170342411
    Abstract: The present invention provides methods and pharmaceutical compositions for treating human immunodeficiency virus type 1 (HIV-1) infections. In particular, the present invention relates to a method for treating HIV-1 infection in a subject in need thereof comprising administering the subject with a therapeutically effective amount of an inhibitor of SGT1 activity or expression.
    Type: Application
    Filed: December 10, 2015
    Publication date: November 30, 2017
    Inventors: Guido KROEMER, Jean-Luc PERFETTINI, Marie-Lise GOUGEON, Awatef ALLOUCH, Mauro PIACENTINI
  • Publication number: 20170342412
    Abstract: A novel class of pharmaceuticals which comprises a Locked Nucleic Acid (LNA) which can be used in antisense therapy. These novel oligonucleotides have improved antisense properties. The novel oligonucleotides are composed of at least one LNA selected from beta-D-thio/amino-LNA or alpha-L-oxy/thio/amino-LNA. The oligonucleotides comprising LNA may also include DNA and/or RNA nucleotides.
    Type: Application
    Filed: June 9, 2017
    Publication date: November 30, 2017
    Inventors: Signe M. Christensen, Nikolaj Dam Mikkelsen, Miriam Frieden, Henrik Frydenlund Hansen, Troels Koch, Daniel Sejer Pedersen, Christoph Rosenbohm, Charlotte Albaek Thrue, Majken Westergaard
  • Publication number: 20170342413
    Abstract: A novel class of pharmaceuticals which comprises a Locked Nucleic Acid (LNA) which can be used in antisense therapy. These novel oligonucleotides have improved antisense properties. The novel oligonucleotides are composed of at least one LNA selected from beta-D-thio/amino-LNA or alpha-L-oxy/thio/amino-LNA. The oligonucleotides comprising LNA may also include DNA and/or RNA nucleotides.
    Type: Application
    Filed: June 9, 2017
    Publication date: November 30, 2017
    Inventors: Signe M. Christensen, Nikolaj Dam Mikkelsen, Miriam Frieden, Henrik Frydenlund Hansen, Troels Koch, Daniel Sejer Pedersen, Christoph Rosenbohm, Charlotte Albaek Thrue, Majken Westergaard
  • Publication number: 20170342414
    Abstract: The present invention relates to the fields of medicine and immunology. In particular, it relates to novel antisense oligonucleotides that may be used in the treatment, prevention and/or delay of Leber congenital amaurosis.
    Type: Application
    Filed: July 21, 2017
    Publication date: November 30, 2017
    Applicant: Stichting Katholieke Universiteit
    Inventors: Robert Wilhelmus Johanna COLLIN, Franciscus Peter Maria CREMERS, Antonia Ingrid DEN HOLLANDER
  • Publication number: 20170342415
    Abstract: The present invention relates to the prevention and the treatment of extracapillary glomerulonephritis such as rapidly progressive glomerulonephritis and collapsing glomerulonephritis.
    Type: Application
    Filed: August 9, 2017
    Publication date: November 30, 2017
    Inventors: Pierre-Louis Tharaux, Carole Henique-Greciet
  • Publication number: 20170342416
    Abstract: The present invention concerns methods and reagents useful in modulating gene expression in a variety of applications, including use in therapeutic, diagnostic, target validation, and genomic discovery applications. Specifically, the invention relates to synthetic chemically modified small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules capable of mediating RNA interference (RNAi) against target nucleic acid sequences. The small nucleic acid molecules are useful in the treatment of any disease or condition that responds to modulation of gene expression or activity in a cell, tissue, or organism.
    Type: Application
    Filed: August 15, 2017
    Publication date: November 30, 2017
    Inventors: James McSwiggen, Leonid Beigelman, Chandra Vargeese