Abstract: The gene for Streptococcus pyogenes DNase B has been cloned and vectors incorporating the cloned DNA have been used to transform Escherichia coli, allowing efficient and rapid production of the DNase in E. coli without the necessity of growing large quantities of S. pyogenes. The enzyme can be produced with a leader peptide at its amino terminus. An improved method for the purification of naturally occurring S. pyogenes DNase B enzyme is also provided. The DNase B enzyme produced, either by purification of naturally occurring enzyme or by recombinant DNA techniques, can be used to generate antibodies and can also be used in immunochemical assays to detect the presence of anti-DNase B antibodies in serum as a marker of infection by S. pyogenes.

Abstract: The gene for Streptococcus pyogenes DNase B has been cloned and vectors incorporating the cloned DNA have been used to transform Escherichia coli, allowing efficient and rapid production of the DNase in E. coli without the necessity of growing large quantities of S. pyogenes. The enzyme can be produced with a leader peptide at its amino-terminus. An improved method for the purification of naturally occurring S. pyogenes DNase B enzyme is also provided. The DNase B enzyme produced, either by purification of naturally occurring enzyme or by recombinant DNA techniques, can be used to generate antibodies and can also be used in immunochemical assays to detect the presence of anti-DNase B antibodies in serum as a marker of infection by S. pyogenes.

Abstract: The gene for Streptococcus pyogenes DNase B has been cloned and vectors incorporating the cloned DNA have been used to transform Escherichia coli, allowing efficient and rapid production of the DNase in E. coli without the necessity of growing large quantities of S. pyogenes. The enzyme can be produced with a leader peptide at its amino terminus. An improved method for the purification of naturally occurring S. pyogenes DNase B enzyme is also provided. The DNase B enzyme produced, either by purification of naturally occurring enzyme or by recombinant DNA techniques, can be used to generate antibodies and can also be used in immunochemical assays to detect the presence of anti-DNase B antibodies in serum as a marker of infection by S. pyogenes.

Abstract: The present invention provides a novel complex of hK2 and PI-6 and methods of using the novel complex. The novel complexes of hK2 and PI-6 of the present invention exist at an elevated level in prostate cancer tissues. Therefore, the hK2-PI6 complexes of the present invention may be used as a serum marker for detecting prostate cancer. They may also be used as an immunohistological marker to detect prostate cancer tissues. In accordance with the present invention, the hK2-PI6 complexes of the present invention may be detected in patient tissue samples by immunohistochemical and/or in patient fluid samples by in vitro immunoassay procedures. Diagnostic kits and diagnostic methods for detecting the existence of prostate cancer are also provided.

Abstract: Activating groups for cyanine dyes used to label chain terminators in nucleotide sequencing, based on N-hydroxyphthalimide, are disclosed. From these activating groups, activated dyes of the present Invention are prepared which react with the derivitized nucleotide chain terminators to give a labeled chain terminator of the present Invention. The activating groups of the present Invention allow the dye-chain terminator reaction to occur at a much higher yield and with much greater selectivity for the mono-substituted product, compared with the prior art.

Abstract: Methods for profiling oligosaccharides released from glycoproteins and methods for the electrophoretic separation of high mannose, complex and hybrid oligosaccharides are disclosed. The methods include first providing an analytical sample which includes at least one released oligosaccharide and introducing the sample into an electrophoretic channel containing a separation medium having a pH less than 8 and greater than 2.5. Then applying a sufficiently high electric field causes the released oligosaccharides to migrate and separate within the electrophoretic channel in accordance with their molecular size or charge to mass ratio. Detecting the separated oligosaccharides provides glycoprotein conjugate profiling information. Preferred embodiments include using a separation medium which includes lithium acetate buffer having a pH of about 4.75 and a gel of about 0.4% polyethylene oxide.

Abstract: A method and apparatus for displaying capillary electrophoresis data wherein absorbance with respect to time is related to graphic values within a graphic range or scale of values and selected graphic values are displayed with respect to time. The selected graphic values may comprise a range hues, color saturation and/or brightness or may represent a monochromatic scale. The resulting representation may be horizontally aligned with the corresponding electrophoretogram absorbance values to provide both a quantitative value (electrophoretogram absorbance values) and qualitative (graphic stripe) display.

Abstract: A novel electrophoresis separation medium comprises polyacrylamide and a dioxane. An electrophoresis separation system comprises a separation channel, the separation channel including the novel separation medium. In a method for electrophoretically separating analytes by introducing analytes into a separation channel, an electric field is applied across the separation channel and the analytes are allowed to electrokinetically migrate within the separation medium. The separation channel comprises the novel electrophoresis separation medium.

Abstract: An apparatus is provided for detecting the pressure of a fluid. The device includes a device for detecting the pressure of a fluid comprising (a) a housing; (b) a first conduit disposed within the housing, having an open inlet end, and an outlet end; (c) a second conduit disposed within the housing having an inlet end and an open outlet end; and (d) a pressure detector disposed within the housing in abutment with the outlet end of the first conduit and the inlet end of the second conduit, such that the pressure detector is in direct operative contact with a fluid flowing within the first and second conduits. Typically, the pressure detector is a pressure transducer. Preferably, the pressure transducer is located within the body, such that the first conduit is disposed at an angle with respect to the pressure sensitive surface of the transducer, the angle being between about 50.degree. and about 75.degree., most preferably between about 65.degree. and about 70.degree..

Abstract: A nephelometer and nephelometer/turbidimeter combination of the type useful in automated chemical analyzers is provided. The combination includes a laser for generating a polarized laser beam having an S-wave component and a P-wave component. The beam is split by a beam splitter specially constructed so that a known proportion of one of the two polarized portions of the beam is directed to a reaction container. In the reaction container, a first polarized component of the laser beam is used in a nephelometric chemical analysis. The remainder of the laser beam passes through the beam splitter to a laser control light detector. Before the remainder of the laser beam reaches the laser control light detector, however, the polarized component which is not used in nephelometric chemical analysis is filtered out. The laser control detector uses the non-filtered portion of the laser beam to control the output of the laser.

Abstract: A separator and a method for quickly separating an aliquot of plasma or serum from cells in a sample of blood is provided herein. The separator includes a housing which defines a separation container, an outlet aperture, a valve which selectively seals the outlet aperture, and a spinner. Initially, the spinner rotates the housing at a separation speed which causes the heavier cells to separate from the serum or plasma. Subsequently, the spinner rotates the housing at a faster, expellant speed which causes the valve to open and the cells to be expelled through the outlet aperture. After the cells have been expelled from the separation container, rotation of the housing is stopped and the serum or plasma is collected from the separation container. Since the separator provided herein does not use a separation gel, the separator is easy to clean and reusable.

Abstract: A system and method of operating a centrifuge is disclosed. The operational parameters of the centrifuge are determined on the basis of the experimental protocol selected by the user. Parameters relevant to the particular experimental protocol are supplied by the user, while the run-time operating parameters of the centrifuge are automatically computed by the system. The centrifugal protocols contemplated in the present invention include pelleting, rate-zonal and isopycnic experiments. Depending upon the specific experimental protocol, the user must provide certain minimum information such as sedimentation rate and gradient concentrations used in the experiment. The user also must identify the rotor to be used, unless the centrifuge device is capable of identifying the rotor automatically. For unusual situations, the user may set the specific operating parameters of a centrifugal run in order to provide for customized experiments.

Abstract: A method, apparatus and article for sequencing polypeptides and proteins ("macromolecules") utilizes a sequencing packet comprised of a plurality of substrates having two different derivatization chemistries within a forarninous container. The sequencing packet is disposed within a reaction chamber in a cartridge assembly having an inlet and outlet. An unknown target macromolecule, and preferably a control macromolecule are bonded to the substrates. The macromolecule and control are then simultaneously sequenced. The control serves to monitor the efficacy of the sequencing process.

Abstract: A microfluidic device having opposed spaced apart sheets of siliceous material, such as glass, the opposed facing sides of each of the sheets having hydrophilic and hydrophobic areas which form therebetween a fluid capillary which is hydrophilic and bounded by hydrophobic areas to form an microfluidic hydrophilic fluid pathway. The preferred device is useful for capillary electrophoresis.

Abstract: An automatic chemistry analyzer is provided having a high throughput and a high reliability. The analyzer uses nephelometric and turbimetric analyzers to analyze a wide variety of parameters within liquid samples typically generated in, for example, a large medical testing laboratory. The machine employs a unique probe and stirring rod assembly mounted at a slight angle with one another using rack and pinion assemblies so that the lower end of the probe and the lower end of the stirring rod are in very close proximity to one another. This feature allows the machine to be used in unusually small reaction cuvettes. The analysis machine also includes an onboard control sample so that the machine can be programmed to periodically calibrate its analyzing equipment during the course of normal operation.

Abstract: A labware adapter having a tubular body with upper and lower spaced apart annular collars, serving to guide the adapter into a rotor bore, while at the same time defining a fluid reservoir between the two collars and the inside wall of the rotor. The upper collar has peripheral indentations through which fluid can pass for ingress into the reservoir in the event of sample leakage from the internal portion of the adapter. The lower collar has a vent channel for allowing fluid to move past the collar, for example on insertion of the adapter into a rotor bore. The indentations, vent channel and reservoir all provide mass relief for the adapter, lowering the overall moment of inertia for the adapter, compared to one fitting into the same bore with a smooth tubular shape. The tubular body has an annular ridge above the upper annular collar defining seal glands so that a cylindrical cap can be fit over the ridge in sealed relation with the tubular body.

Abstract: A cap assembly for use with a centrifuge container includes a stopper (plug) member to provide a fluid-tight seal of an open end of the container. The stopper member includes a channel therethrough. A lid receives the combination of a stopper fitted into the open end of the container. Depending portions on the underside of the lid press upon the stopper to ensure a reliable seal of the container. In addition, the depending portions are adapted to close off an opening of the channel when the lid and stopper are assembled. Removal of the lid opens the channel allowing air to flow into the container, and in this way any vacuum that develops in the container during a centrifugation run is released by such action.

Abstract: A rotor lid assembly for a rotor body comprises a lid portion having a centrally depending shank. A bore formed through the shank receives a tie-down stem having a diameter smaller than the bore. A piston-like portion disposed along the stem contacts a periphery of the bore. A venting channel is formed along the shank to allow fluidic flow to and from the bore. The piston portion occludes such flow when the stem is in a first position and permits fluid flow when the stem is in a second position. In one embodiment the lid assembly comprises a lid member and a safety knob, each having a central neck portion and a bore formed therethrough with the neck portion of the knob received in the bore of the lid. A venting channel is formed through both neck portions. A tie-down stem is received in the bore of the knob.

Abstract: Universal solid support oligonucleotide synthesis reagents, oligonucleotide synthesis processes, and reagents for cleaving oligonucleotides from solid supports are disclosed. Oligonucleotide synthesis reagents have the following general formula:SS--R.sup.6 --O--R.sup.3 Iwherein SS is a solid support; R.sup.6 is ##STR1## where R.sup.5 is hydrogen or alkyl and R.sup.4 is a phosphate protecting group; and R.sup.3 is a ring moiety having vicinal groups --XR.sup.1 and --YR.sup.2 wherein each of X and Y is independently selected from the group consisting of O, S and NH and one of R.sup.1 and R.sup.2 is a blocking moiety and the other is hydrogen or a hydroxy protecting group. Oligonucleotide cleaving reagents include methylamine and/or ammonium hydroxide and trimethylamine.

Abstract: A protocol record database is used in conjunction with operating a centrifuge device. Each protocol record includes information relevant to the centrifugation of a certain specimen. The user can search the database for a protocol on the basis of the specimen and/or the type of separation desired. The database has an interface to one or more centrifuges via a controller. The controller, operates a centrifuge in accordance with the run program of a selected protocol record. In a preferred embodiment, the protocol records have links to additional files which supplement the information contained in the protocol records. These supplemental files include information related to the availability and compatibility of the various hardware needed to perform a centrifugation. The supplemental files can also be used to provide general information to assist the user in setting up a centrifuge for an experiment.