Patents Assigned to IRM LLC
  • Publication number: 20050222383
    Abstract: The invention provides substrate specificity profiles for serine protease prostasin. Optimal prostasin substrate sequences, both to the prime side and non-prime side of the prostasin recognition site, are disclosed herein. The prostasin substrate sequences are used in designing substrates, inhibitors, and prodrugs. Prostasin inhibitors based on substrate specificity are also provided.
    Type: Application
    Filed: February 4, 2005
    Publication date: October 6, 2005
    Applicant: IRM LLC
    Inventors: Jennifer Harris, Aaron Shipway
  • Publication number: 20050222177
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the Abl, BCR-Abl, Bmx, c-Raf, Csk, Fes, FGFR, Flt3, Ikk, IR, JNK, Lck, Mkk, PKC, PKD, Rsk, SAPK, Syk, Trk, BTK, Src, EGFR, IGF, Mek, Ros and Tie2 kinases.
    Type: Application
    Filed: July 29, 2004
    Publication date: October 6, 2005
    Applicant: IRM LLC
    Inventors: Taebo Sim, Hyun Lee, Pingda Ren, Qiang Ding, Yi Liu, Bing Li, Lintong Li, Xia Wang, Tetsuo Uno, Guobao Zhang, Nathanael Gray, Shuli You
  • Publication number: 20050214788
    Abstract: Methods and/or systems for modeling molecular systems and/or other physical systems using scaling optimization.
    Type: Application
    Filed: September 9, 2004
    Publication date: September 29, 2005
    Applicant: IRM, LLC
    Inventor: Jianwei Che
  • Patent number: 6949644
    Abstract: The invention provides general methods for preparing 2,9-, 2,6,9-, O6-aryl- and O6-alkyl-substituted purines in a combinatorial and traceless fashion. The methods involve, in some embodiments, Mitsunobu alkylation of 2-fluoro-6-phenylsulfenylpurine at N9 with alcohols in solution, followed by C2-capture of the purine core with a resin-bound amine and subsequent oxidation and displacement of the C6 sulfonyl group with amines and anilines. In one aspect, the present invention provides a method of preparing a 2,6,9-substituded purine compounds of Formula I: the method comprising: a) oxidizing a resin-bound compound of Formula II: to provide a resin-bound compound of Formula III: b) reacting the compound of Formula III with an amine of Formula IV NR3R4??IV, to provide a resin-bound compound of Formula V c) cleaving the resin-bound compound of Formula V from the resin to provide the substituted purine compounds of Formula I.
    Type: Grant
    Filed: October 12, 2002
    Date of Patent: September 27, 2005
    Assignees: IRM LLC, The Scripps Research Institute
    Inventors: Sheng Ding, Qiang Ding, Nathanael S. Gray, Peter G. Schultz
  • Publication number: 20050209285
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the Abl, BCR-Abl, PDGF-R, lck, SAPK2?, p38, TGF?, KDR, c-Kit, b-RAF, c-RAF, FLT1 and FLT4 kinases.
    Type: Application
    Filed: October 1, 2004
    Publication date: September 22, 2005
    Applicant: IRM LLC
    Inventors: Nathanael Gray, Jiqing Jiang, Yi Liu, Ruo Steensma
  • Publication number: 20050186138
    Abstract: The present invention provides methods of identifying circadian rhythm modulators and methods of modulating circadian rhythm in animals.
    Type: Application
    Filed: October 13, 2004
    Publication date: August 25, 2005
    Applicants: IRM, LLC, The Scripps Research Institute
    Inventors: John Hogenesch, Trey Sato, Steve Kay
  • Publication number: 20050187230
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the Abl, BCR-Abl, CSK, JNK1, JNK2, PDGF-R, p38, p70S6K, TGF?, SRC, EGFR, c-Kit, trkB, FGFR3, Fes, Lck, Syk, RAF, MKK4, MKK6 and SAPK2? kinases.
    Type: Application
    Filed: October 8, 2004
    Publication date: August 25, 2005
    Applicant: IRM LLC
    Inventors: Qiang Ding, Yongping Xie, Nathanael Gray, Shuli You, Greg Chopiuk, Jiqing Jiang, Yi Liu, Ruo Steensma, Xing Wang, Taebo Sim
  • Patent number: 6932557
    Abstract: The present invention provides grasping mechanisms, gripper apparatus/systems, and related methods. Grasping mechanisms that include stops, support surfaces, and height adjusting surfaces to determine three translational axis positions of a grasped object are provided. In addition, grasping mechanisms that are resiliently coupled to other gripper apparatus components are also provided.
    Type: Grant
    Filed: July 14, 2003
    Date of Patent: August 23, 2005
    Assignee: IRM, LLC
    Inventors: Robert Charles Downs, Mark Richard Weselak, James Kevin Mainquist
  • Publication number: 20050171105
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the Abl, BCR-Abl, EGF-R, c-erbB2 kinase (HER-2), CHK2, FGFR3, p70S6K, PKC, PDGF-R, p38, TGF?, KDR, c-Kit, b-RAF, c-RAF, FLT1 and/or FLT4 kinases.
    Type: Application
    Filed: September 30, 2004
    Publication date: August 4, 2005
    Applicants: IRM LLC, Novartis AG
    Inventors: Greg Chopiuk, Pascal Furet, Nathanael Gray, Patricia Imbach, Yi Liu, Joseph Schoepfer, Ruo Steensma
  • Publication number: 20050163637
    Abstract: This invention provides material conveying systems that are configured to convey substantially uniform quantities of material to and/or from the material sites and to minimize periodic variation among the conveyed quantities of material. Related computer program products and methods are also provided.
    Type: Application
    Filed: December 1, 2004
    Publication date: July 28, 2005
    Applicant: IRM, LLC
    Inventors: Jim Chang, James Mainquist, Robert Downs, Chris Petersen, Daniel Sipes
  • Publication number: 20050159391
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the Abl, BCR-Abl, Bmx, CSK, TrkB, FGFR3, Fes, Lck, B-RAF, C-RAF, MKK6, SAPK2? and SAPK2? kinases.
    Type: Application
    Filed: August 26, 2004
    Publication date: July 21, 2005
    Applicant: IRM LLC
    Inventors: Qiang Ding, Nathanael Gray, Bing Li, Yi Liu, Tetsuo Uno
  • Publication number: 20050158813
    Abstract: The present invention provides universal G protein-coupled receptor (GPCR) reporter constructs. The constructs comprise a serum response element, a cAMP response element, and a multiple response element. These reporter constructs are able to detect activities of all GPCRs examined. Further provided by the present invention are host cells harboring a universal GPCR reporter construct of the invention, as well as assays for detecting modulators of GPCRs using the host cells.
    Type: Application
    Filed: January 16, 2004
    Publication date: July 21, 2005
    Applicant: IRM LLC
    Inventors: Yinghe Hu, Cecilia Jiang
  • Publication number: 20050153306
    Abstract: The present invention provides, inter alia, fluorogenic enzyme substrates, such as fluorogenic polypeptide substrates, libraries of fluorogenic enzyme substrates and methods for assaying for enzymatically active enzymes, such as hydrolases (e.g., proteases), in biological samples.
    Type: Application
    Filed: July 14, 2004
    Publication date: July 14, 2005
    Applicant: IRM LLC
    Inventors: Jennifer Harris, Robert Damoiseaux, Bradley Backes, Nicolas Winssinger
  • Publication number: 20050153955
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases and disorders associated with kinase activity, particularly diseases associated with the activity of CDK1, CDK2, CDK4, CDK5, GSK3?, Bcr-ab1, Flt-3, c-Kit, PDGFR?, Src, Mek1 and CK1.
    Type: Application
    Filed: April 30, 2004
    Publication date: July 14, 2005
    Applicant: IRM LLC
    Inventors: Yongqin Wan, Nathanael Gray
  • Publication number: 20050149993
    Abstract: The present invention provides a transgenic non-human animals comprising a disruption in the melanopsin gene as well as methods for using the animals to identify agents useful for modulating circadian rhythm in animals.
    Type: Application
    Filed: August 8, 2003
    Publication date: July 7, 2005
    Applicants: IRM LLC, Uniformed Services University of the Health Sciences, The Scripps Research Institute
    Inventors: Satchidananda Panda, John Hogenesch, Ignacio Provincio, Steve Kay
  • Publication number: 20050143295
    Abstract: This invention describes gene targets for the development of therapeutics to treat drug addiction. Animal models of drug craving and relapse have been developed and used to find gene expression changes in key brain regions implicated in cocaine addiction. The genes whose expression levels are altered serve as pharmacological targets with the purpose of preventing or inhibiting cocaine craving and relapse in human cocaine addicts.
    Type: Application
    Filed: October 6, 2003
    Publication date: June 30, 2005
    Applicant: IRM LLC
    Inventors: John Walker, David Self, Kyle Frantz
  • Publication number: 20050130959
    Abstract: The present invention provides compounds, compositions and methods for the selective inhibition of cathepsin S. In a preferred aspect, cathepsin S is selectively inhibited in the presence of at least one other cathepsin isozyme. The present invention also provides methods for treating a disease state in a subject by selectively inhibiting cathepsin S.
    Type: Application
    Filed: October 20, 2004
    Publication date: June 16, 2005
    Applicant: IRM LLC
    Inventors: Hong Liu, Phillip Alper, Daniel Mutnick, Donald Karanewsky
  • Patent number: 6906158
    Abstract: This invention provides novel methods for synthesis of narrow polydispersity oxazolone-containing polymers via nitroxide-mediated living free radical polymerization, as well as the products and derivatives thereof.
    Type: Grant
    Filed: March 11, 2004
    Date of Patent: June 14, 2005
    Assignee: IRM, LLC
    Inventor: David Tully
  • Patent number: 6906096
    Abstract: The present invention provides, compounds, methods and compositions of biologically important indoles. In addition, the present invention provides synthesis methods for substituting leaving groups at positions 4 and 7 of the indole ring as diversity generating elements.
    Type: Grant
    Filed: June 26, 2003
    Date of Patent: June 14, 2005
    Assignee: IRM LLC
    Inventors: Phil B. Alper, Khanh Linh T. Nguyen
  • Publication number: 20050124637
    Abstract: The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with cSRC, Lck, FGFR3, Flt3, TrkB, Bmx, and/or PFGFR? kinase activity.
    Type: Application
    Filed: August 13, 2004
    Publication date: June 9, 2005
    Applicant: IRM LLC
    Inventors: Dai Cheng, Qiang Ding, Dong Han, Nathanael Gray, Guobao Zhang