Patents Assigned to Stanford Junior University
  • Publication number: 20250250616
    Abstract: Provided are methods of analyzing target nucleic acids, the methods comprising, using the target nucleic acids as reagents and reporters as substrates, assaying enzyme kinetic parameters of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) endonucleases comprising guide RNAs (gRNAs) that hybridize with reference nucleic acids. In certain aspects, certain such methods comprise comparing a sequence of a target nucleic acid with a sequence of a reference nucleic acid. In some embodiments, such comparison is based on the rates of cleavage of the reporters at plurality of concentrations of the reporters. The kinetic parameters can also be the Michaelis-Menten constant (KM), the apparent turnover rate (K*cat), and/or the apparent catalytic efficiency (K*cat/KM). Kits for performing the methods of the disclosure are also provided.
    Type: Application
    Filed: April 12, 2023
    Publication date: August 7, 2025
    Applicant: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Juan Santiago, Alexandre Avaro, Ashwin Ramachandran, Diego Huyke, Charles Blanluet
  • Patent number: 12377077
    Abstract: Methods of treatment and pharmaceutical formulations configured to treat primary and secondary mitochondrial dysfunction are provided. The methods and treatments use an agonist of AMPK. The agonist activates AMPK to activate ATP-producing pathways and inhibiting ATP-consuming pathways, thus allowing for the alleviation of symptoms associated with mitochondrial dysfunctions.
    Type: Grant
    Filed: December 31, 2019
    Date of Patent: August 5, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Tereza Moore, Tina M. Cowan, Gregory M. Enns, Mehrdad Shamloo, Michael J. Green, Alam Jahangir, Rolando E. Yanes
  • Patent number: 12379331
    Abstract: In accordance with the invention, an X-ray amplitude analyzer grating adapted for use in an interferometric imaging system, the interferometric imaging system comprising an X-ray source and an X-ray detector with an X-ray fringe plane between the X-ray source and the X-ray detector, wherein an X-ray fringe pattern is formed at the X-ray fringe plane, wherein the X-ray amplitude analyzer grating is provided. The X-ray amplitude analyzer grating comprises a plurality of grating pixels across two dimensions of the X-ray amplitude analyzer grating, wherein each grating pixels of the plurality of grating pixels has a different pattern with respect to all adjacent grating pixels to the grating pixel so that all adjacent grating pixels do not have a same pattern as the grating pixel.
    Type: Grant
    Filed: September 4, 2020
    Date of Patent: August 5, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Max Yuen, Yao-Te Cheng, Paul Christopher Hansen, Lambertus Hesselink
  • Patent number: 12378530
    Abstract: Functional in vitro assays are provided for determining patient specific responsiveness to immunotherapy agents within a clinically actionable time frame.
    Type: Grant
    Filed: October 22, 2021
    Date of Patent: August 5, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: James Neal, Calvin Jay Kuo
  • Publication number: 20250243261
    Abstract: Provided herein are methods using machine learning to predict protein variants that are likely to occur in nature. Such variants can be used (selected) to improve properties of the proteins. Also provided herein are antibodies and antigen binding portions thereof generated using the provided methods that specifically bind several antigens from coronaviruses, ebolaviruses, and influenza A viruses, various compositions of such antibodies or antigen binding portions thereof, recombinant nucleic acids encoding the antibodies and antigen binding portions thereof, and associated methods of use.
    Type: Application
    Filed: April 7, 2023
    Publication date: July 31, 2025
    Applicants: CZ Biohub SF, LLC, The Board of Trustees of the Leland Stanford Junior University
    Inventors: Brian Lance Hie, Varun Shanker, Peter S. Kim
  • Patent number: 12365947
    Abstract: The invention generally relates to methods for assessing the health of a tissue by characterizing circulating nucleic acids in a biological sample. According to certain embodiments, methods for assessing the health of a tissue include the steps of detecting a sample level of RNA in a biological sample, comparing the sample level of RNA to a reference level of RNA specific to the tissue, determining whether a difference exists between the sample level and the reference level, and characterizing the tissue as abnormal if a difference is detected.
    Type: Grant
    Filed: February 10, 2022
    Date of Patent: July 22, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Lian Chye Winston Koh, Stephen R. Quake, Hei-Mun Christina Fan, Wenying Pan
  • Patent number: 12359253
    Abstract: Provided herein are devices, methods, and systems for in situ gene sequencing of a target nucleic acid in a cell in an intact tissue. Methods of screening a candidate agent to determine whether the candidate agent modulates gene expression of a nucleic acid in a cell in an intact tissue are also provided herein.
    Type: Grant
    Filed: April 4, 2019
    Date of Patent: July 15, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Xiao Wang, William E. Allen, Karl A. Deisseroth
  • Patent number: 12361656
    Abstract: Alignment of a 2D image to a corresponding 3D image is provided by writing a pattern into a 3D sample. The pattern is at known positions in the 3D image, and provides visible reference features in the 2D image. This permits accurate determination of the plane in the 3D image that corresponds to the 2D image.
    Type: Grant
    Filed: April 10, 2020
    Date of Patent: July 15, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Yonatan Winetraub, Edwin Yuan, Itamar Terem, Caroline Yu, Adam de la Zerda
  • Patent number: 12358882
    Abstract: A method for synthesizing furan-2, 5-dicarboxylate (FDCA2?) is provided. Furan-2-carboxylate is provided with an inorganic base in the form of an inorganic base salt, wherein the furan-2-carboxylate and the inorganic base salt form a mixture. A CO2 gas is provided to the mixture. The mixture is heated to a temperature to at least partially melt the mixture, wherein the heating of the mixture causes the synthesizing of a MxFDCA solid, wherein MxFDCA denotes a salt comprising furan-2,5-dicarboxylate (FDCA2?) and cation M+ and/or M2+, where x is a number between 1 and 2, inclusive. The mixture containing furan-2-carboxylate is mechanically agitated, wherein the mechanically agitating breaks up the MxFDCA solid.
    Type: Grant
    Filed: February 5, 2021
    Date of Patent: July 15, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Matthew W. Kanan, Aanindeeta Banerjee, Amy Delano Frankhouser
  • Publication number: 20250221673
    Abstract: Systems and methods for predictive glucose in accordance with embodiments of the invention are illustrated. One embodiment includes glucose management device, including a brain signal recorder, and a controller, including a processor, and a memory, the memory containing a glucose monitoring application configured to direct the processor to record a brain activity signal of a user's brain using the brain signal recorder, and decode the brain activity signal to predict future glucose levels of the patient.
    Type: Application
    Filed: March 28, 2025
    Publication date: July 10, 2025
    Applicant: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Yuhao Huang, Casey Halpern, Jonathon Parker, Rajat Shivacharan, Jeffrey B. Wang
  • Patent number: 12351625
    Abstract: Therapeutic antibodies specific for osteopontin and methods of using them for treating osteopontin-associated disorders are provided. In particular, antibodies, or antigen-binding fragments thereof, that inhibit thrombin-cleavage of osteopontin or block the activity of thrombin cleavage fragments of osteopontin are provided. Additionally, antibody conjugates and pharmaceutical compositions or formulations comprising the antibodies or antibody conjugates as well as kits including the antibodies, conjugates, or formulations are also provided.
    Type: Grant
    Filed: August 7, 2020
    Date of Patent: July 8, 2025
    Assignees: The Board of Trustees of the Leland Stanford Junior University, The United States Government as represented by the Department of Veterans Affairs
    Inventors: Lawrence L. K. Leung, Michael J. Morser, Timothy Myles
  • Patent number: 12352765
    Abstract: Multiparametric analysis is performed at the single cell level of biological samples obtained from an individual during pregnancy to obtain a determination of changes in immune cell subsets, which changes include, without limitation, altered activation states of proteins involved in signaling pathways. Changes occur in signaling pathways of these immune cells that are predictive of propensity to develop preeclampsia in the pregnancy.
    Type: Grant
    Filed: November 14, 2019
    Date of Patent: July 8, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Brice L. Gauilliere, Martin S. Angst, Nima Aghaeepour, David K. Stevenson, Xiaoyuan Han, Mohammad S. Ghaemi
  • Patent number: 12353935
    Abstract: An acoustic biometric touch scanner device and method is disclosed. In one aspect, an acoustic fingerprint sensing device includes an array of ultrasonic transducers configured to transmit an ultrasound signal having a frequency in a range from 50 megahertz (MHz) to 500 MHz. The acoustic fingerprint ultrasonic transducers include a piezoelectric film. The acoustic fingerprint sensing device further includes a receiving surface configured to receive a finger. The acoustic fingerprint sensing device further includes a processor configured to generate an image of at least a portion of a fingerprint of the finger based on a reflection of the ultrasound signal from the finger.
    Type: Grant
    Filed: September 22, 2023
    Date of Patent: July 8, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Morten Fischer Rasmussen, Gerard Touma, Butrus T. Khuri-Yakub
  • Patent number: 12338268
    Abstract: Compositions and methods for treating aggregation-associated diseases are disclosed. In particular, compositions comprising the nascent polypeptide-associated complex (NAC) and the apical domain of CCT1 as well as peptide fragments thereof and fusion proteins containing NAC and CCT1 peptides can be used to suppress pathological protein aggregation and are useful for treatment of diseases associated with polyQ aggregation, amyloid beta aggregation, and alpha-synuclein aggregation.
    Type: Grant
    Filed: March 4, 2020
    Date of Patent: June 24, 2025
    Assignees: The Board of Trustees of the Leland Stanford Junior University, The University of Leeds, University of Konstanz
    Inventors: Judith Frydman, Sheena E. Radford, Elke Deuerling
  • Patent number: 12337476
    Abstract: Technology is provided for controlling the motion of soft growing robots during retraction to prevent uncontrollable buckling or bending. A double walled flexible tubular robot is provided with an inside wall, an outside wall, and a folded tip. A retraction device located at the folded tip has a routing aperture sized to encompass the inside wall and for routing the inside wall through the retraction device. The retraction device further has a retraction mechanism inside the retraction device to controllably retract material of the inside wall through the routing aperture in the direction away from the folded tip, thereby decreasing the outside wall, creating more inside wall, and as such shortening the length of the flexible robot. This technology enables behaviors, such as (1) growing in one direction, and then retracting and growing in a different direction, and (2) retracting through a confined space without applying force to the environment.
    Type: Grant
    Filed: October 9, 2020
    Date of Patent: June 24, 2025
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Margaret M. Coad, Rachel Thomasson, Laura H. Blumenschein, Nathan Scot Usevitch, Allison M. Okamura
  • Patent number: 12339555
    Abstract: Dynamic windows with adjustable tint give users greater control over flow of light and heat. Reversible metal electrodeposition dynamic windows include (i) a transparent or translucent conductive electrode; (ii) an electrolyte solution in contact with the electrode, the electrolyte solution comprising metal cations that are reversibly electrodeposited onto the transparent electrode upon application of a cathodic potential; and (iii) a counter electrode. The electrolyte solution advantageously includes a small amount of an additive (e.g., an inhibitor, an accelerator, a leveler, or an organic or inorganic molecule that similarly serves to enhance the surface morphology of the metal cations during reversible metal electrodeposition onto the transparent electrode). Such enhancement of surface morphology during the reversible electrodeposition of the metal tinting layer over the electrode enhances one or more of color neutrality, transmittance characteristics of visible wavelengths (e.g.
    Type: Grant
    Filed: June 13, 2024
    Date of Patent: June 24, 2025
    Assignees: The Regents of the University of Colorado, a body corporate, The Board of Trustees of the Leland Stanford Junior University
    Inventors: Michael T. Strand, Christopher Barile, Tyler S. Hernandez, Andrew L. Yeang, Michael D. McGehee
  • Publication number: 20250197939
    Abstract: Methods and systems for detecting cell states in a biological sample are disclosed. Methods and systems for predicting a therapeutic response, a severe immune-related adverse event (irAE), a symptomatic irAE, and an irAE grade of a subject to be administered an immunotherapy treatment based on cell states detected from a single biological sample from the subject are also disclosed.
    Type: Application
    Filed: March 17, 2023
    Publication date: June 19, 2025
    Applicants: Washington University, The Board of Trustees of the Leland Stanford Junior University
    Inventors: Aadel Chaudhuri, Aaron M. Newman
  • Publication number: 20250189240
    Abstract: In one embodiment, a micro-cooler assembly includes a manifold having at least one inlet for receiving a liquid, a plurality of fins, wherein each fin of the plurality of fins includes a micro-channel, and a plurality of vapor gaps interlaced with the plurality of fins. A width of the micro-channels is graded, and/or a width of the vapor gaps is graded. The micro-cooler assembly further includes a cold plate that includes a surface and a wick region disposed on the surface. The manifold is coupled to the surface of the cold plate. The at least one inlet is operable to provide the liquid proximate the wick region. The liquid is operable to be wicked into the wick region through the micro-channels of the plurality of fins, and heating of the liquid changes phase to a vapor that exits the manifold through the plurality of vapor gaps.
    Type: Application
    Filed: November 19, 2024
    Publication date: June 12, 2025
    Applicants: Toyota Motor Engineering & Manufacturing North America, Inc., Board of Trustees of the Leland Stanford Junior University, The Regents of the University of California
    Inventors: Heungdong Kwon, Qianying Wu, Sougata Hazra, Mehdi Asheghi, Kenneth E. Goodson, Ercan Mehmet Dede, James Palko, Hyoungsoon Lee, Daeyoung Kong
  • Publication number: 20250185929
    Abstract: Systems and methods for clinical neuronavigation in accordance with embodiments of the invention are illustrated. One embodiment includes a method for generating a brain stimulation target, including obtaining functional magnetic resonance imaging (fMRI) image data of a patient's brain, where brain imaging data describes neuronal activations within the patient's brain, determining a brain stimulation target by mapping at least one region of interest to the patient's brain, locating functional subregions within the at least one region of interest based on the fMRI image data, determining functional relationships between at least two brain regions of interest, generating parameters for each functional subregion, generating a target quality score for each functional subregion based on the parameters and selecting a brain stimulation target based on its target quality score and the patient's neurological condition.
    Type: Application
    Filed: December 13, 2024
    Publication date: June 12, 2025
    Applicant: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Nolan Williams, Keith Sudheimer
  • Publication number: 20250179575
    Abstract: Methods are disclosed for predicting a likelihood of developing a severe immune-related adverse event (irAE) associated with the administration of an immunotherapy in a melanoma patient based on abundances of activated CD4 memory T cells and/or diversities of T cell receptors (TCR) within a peripheral blood sample obtained from the patient.
    Type: Application
    Filed: January 12, 2023
    Publication date: June 5, 2025
    Applicants: Washington University, The Board of Trustees of the Leland Stanford Junior University
    Inventors: Aadel Chaudhuri, Aaron M. Newman, Alexander Lozano