Patents Examined by Iqbal H Chowdhury
  • Patent number: 11718649
    Abstract: The present invention is based on the fusion of FimH, CsgA and PapG adhesins (type 1 Fimbriae, curli and P, respectively) to generate biomolecules that can be used as vaccines against UTIs. Briefly, the invention is based on the design of a fusion template gene fimH-csgA-papG-fimH-csgA and defined as fcpfc to generate the different combinations of monomeric [FimH, CsgA and PapG], dimeric [FimH-CsgA (FC), CsgA-PapG (CP) and PapG-FimH (PF)] and trimeric (FimH-PapG-CsgA (FCP), PapG-CsgA-FimH (PCF) and CsgA-FimH-PapG (CFP)] proteins. Bioactivity was determined by the antibodies present in UP sera and urine, the quantification in the release of cytokines and adhesion inhibition assays.
    Type: Grant
    Filed: October 11, 2018
    Date of Patent: August 8, 2023
    Inventors: Juan Xicohtencatl Cortes, Victor Manuel Luna Pineda
  • Patent number: 11708567
    Abstract: The present invention provides several non-naturally occurring sulfotransferase enzymes that have been engineered to react with aryl sulfate compounds as sulfo group donors, instead of the natural substrate 3?-phosphoadenosine 5?-phosphosulfate (PAPS), and with heparosan-based polysaccharides, particularly heparan sulfate, as sulfo group acceptors. Each of the engineered sulfotransferase enzymes have a biological activity characterized by the position within the heparosan-based polysaccharide that receives the sulfo group, including glucosaminyl N-sulfotransferase activity, hexuronyl 2-O sulfotransferase activity, glucosaminyl 6-O sulfotransferase activity, or glucosaminyl 3-O sulfotransferase activity. Methods of using the engineered sulfotransferases to produce sulfated heparosan-based polysaccharides, including polysaccharides having anticoagulant activity, are also provided.
    Type: Grant
    Filed: August 24, 2022
    Date of Patent: July 25, 2023
    Assignee: OPTIMVIA, LLC
    Inventors: Tarsis Gesteira Ferreira, Daniel H. Lajiness
  • Patent number: 11697826
    Abstract: Disclosed herein are nucleic acid-guided nucleases, guide nucleic acids, and targetable nuclease systems, and methods of use. Disclosed herein are engineered non-naturally occurring nucleic acid-guided nucleases, guide nucleic acids, and targetable nuclease systems, and methods of use. Targetable nuclease systems can be used to edit genetic targets, including recursive genetic engineering and trackable genetic engineering methods.
    Type: Grant
    Filed: May 24, 2019
    Date of Patent: July 11, 2023
    Assignee: Inscripta, Inc.
    Inventors: Ryan T. Gill, Andrew Garst, Tanya Elizabeth Warnecke Lipscomb
  • Patent number: 11692204
    Abstract: Use of genomic NW_006880285.1 in CHO cell for stably expressing a protein is disclosed. The certain site in CHO cell genome for stably expressing a protein is positioned at a base of No. 1235357 in a CHO cell gene NW_006880285.1; a sequence of 5? NNNNNNNNNNNNNNNNNNNNNGG3? that can be identified by CRISPR/Cas9 technology and positioned in a base range of No. 1235284-1235429 around the certain site is a target sequence. Various of protein genes are introduced into a fixed site in CHO cell genome, and expressed stably in the present disclosure.
    Type: Grant
    Filed: December 3, 2018
    Date of Patent: July 4, 2023
    Assignee: JIANGNAN UNIVERSITY
    Inventors: Jian Jin, Yun Chen, Huazhong Li, Songtao Zhou, Zuoying Duan, Xiaohai Gong
  • Patent number: 11685937
    Abstract: The invention features compositions and methods for the increased production of mevalonate, isoprene, isoprenoid precursor molecules, isoprenoids, and/or acetyl-CoA-derived products in recombinant microorganisms by engineering the microorganisms to comprise one or more acetylating proteins such that the expression and/or activity of the one or more acetylating proteins is modulated.
    Type: Grant
    Filed: May 11, 2020
    Date of Patent: June 27, 2023
    Assignee: Danisco US Inc.
    Inventors: Marguerite A. Cervin, Michael C. Miller, Derek H. Wells, Alan J. Wolfe, Madhukar S. Dasika
  • Patent number: 11667885
    Abstract: The present description is related to the field of cultivating algae. It introduces a method of cultivating algae by depleting the culture of an inorganic nutrient and exposing the alga to high intensity light to obtain algal cell mass having enriched lipid content and reduced chlorophyll content.
    Type: Grant
    Filed: November 4, 2015
    Date of Patent: June 6, 2023
    Assignees: NESTE OYJ, SUOMEN YMPÄRISTÖKESKUS SYKE
    Inventors: Reijo Tanner, Jukka Seppälä, Timo Tamminen, Kristian Spilling, Pasi Ylöstalo, Pauliina Uronen
  • Patent number: 11667901
    Abstract: Provided are chondrosulfatase and a use thereof, belonging to the technical field of biological engineering. Chondrosulfatase is screened and identified from the natural world, the maximum similarity between its amino acid sequence and that of the chondrosulfatase reported by NCBI being 85%; then the expression in Escherichia coli and Bacillus subtilis is optimized, achieving the high-efficiency biosynthesis of chondrosulfatase having high enzymatic activity, the maximum enzyme activity being 11976.5 U/L; furthermore, the entire process and post-processing are simpler. The invention has potentially broad value in application in the preparation of products containing low molecular-weight chondroitin sulfate in the fields of medicine, cosmetics, and biology, lays the foundation for efficient fermentation of a microbial system to produce a chondrosulfatase having high enzyme activity, and is suitable for industrialized production applications.
    Type: Grant
    Filed: September 18, 2019
    Date of Patent: June 6, 2023
    Assignee: NANJING HANXIN PHARMACEUTICAL INC
    Inventors: Haoning Zhang, Song Chen, Chuangen Tang, Jing Wang
  • Patent number: 11667935
    Abstract: The invention relates to a process for producing a fermentation product that comprises fermentation of a carbon source in a reactor with a cell, capable of converting sugar, glycerol and acetic acid, wherein the carbon source comprises sugar and acetic acid, comprising the following steps: a) Inoculating a optionally diluted carbon source with the cell; b) optionally fermenting the reactor in batch mode; c) adding carbon source comprising glycerol and optionally sugar gradually to the reactor; d) after sufficient fermentation time, isolation of fermentation product from the reactor, e) optionally keeping the remaining fraction after isolation of step d) as spent broth; and f) optionally using the spent broth in step a) to dilute the carbon source.
    Type: Grant
    Filed: November 12, 2020
    Date of Patent: June 6, 2023
    Assignee: DSM IP ASSETS B.V.
    Inventors: Hans Marinus Charles Johannes De Bruijn, Wilhelmus Theodorus Antonius Maria De Laat, Paul Klaassen
  • Patent number: 11653679
    Abstract: Methods of preparing highly purified steviol glycosides, particularly rebaudiosides A, D and M are described. The methods include utilizing recombinant microorganisms for converting various staring compositions to target steviol glycosides. In addition, novel steviol glycosides reb D2, reb M2, and reb I are disclosed, as are methods of preparing the same. The highly purified rebaudiosides are useful as non-caloric sweetener in edible and chewable compositions such as any beverages, confectioneries, bakery products, cookies, and chewing gums.
    Type: Grant
    Filed: August 21, 2015
    Date of Patent: May 23, 2023
    Assignee: PURECIRCLE SDN BHD
    Inventors: Avetik Markosyan, Indra Prakash, Cyrille Jarrin, Aurelien Badie, Robert Ter Halle, Cynthia Curran, Daniel Auriol
  • Patent number: 11655476
    Abstract: A modular and hierarchical DNA assembly platform for synthetic biology is described. This enabling technology, termed MIDAS (for Modular Idempotent DNA Assembly System), can precisely assemble multiple DNA fragments in a single reaction using a standardised assembly design. It can be used to build genes from libraries of sequence-verified, reusable parts and to assemble multiple genes in a single vector. We describe the design and use of MIDAS, and its application in the reconstruction of the metabolic pathway for production of paspaline, a key intermediate in the biosynthesis of a range of indole diterpenes—a class of economically important secondary metabolites produced by several species of filamentous fungi.
    Type: Grant
    Filed: September 28, 2018
    Date of Patent: May 23, 2023
    Assignee: Victoria Link Llimited
    Inventors: Emily Jane Parker, Matthew Joseph Nicholson, Craig John Van Dolleweerd
  • Patent number: 11655465
    Abstract: The disclosure provides novel topoisomerases which exhibit weakened ability to form a covalent bond to the 5?-(C/T)CCTT-3? recognition site in the presence of increased NaCl concentrations relative to wild-type, together with novel methods for synthesizing DNA in the 3? to 5? direction using the novel topoisomerase; and other compounds, compositions, methods and devices comprising or utilizing topoisomerases which exhibit reduced covalent bond formation to the 5?-(C/T)CCTT-3? recognition site in the presence of increased NaCl concentrations, relative to wild-type.
    Type: Grant
    Filed: May 4, 2020
    Date of Patent: May 23, 2023
    Assignee: IRIDIA, INC.
    Inventors: Paul F. Predki, Stefen Boehme
  • Patent number: 11649450
    Abstract: The disclosure provides methods of making a protein having a desired non-standard amino acid incorporated at its N-terminus in a cell and methods of screening for an amino acyl tRNA synthetase variant that preferentially selects a non-standard amino acid against its standard amino acid counterpart or undesired non-standard amino acids for incorporation into a protein in a cell.
    Type: Grant
    Filed: June 29, 2018
    Date of Patent: May 16, 2023
    Assignee: President and Fellows of Harvard College
    Inventors: Aditya Mohan Kunjapur, George M. Church
  • Patent number: 11649512
    Abstract: The invention relates to the use of a polysaccharide having at least four saccharide units, such as stachyose, as a glass-forming agent for the freeze-drying of a reaction mixture comprising an enzyme. In particular, the enzyme is a polymerase useful in a nucleic acid amplification reaction such as a Polymerase Chain Reaction. Compositions comprising such polysaccharides as well as methods for preparing them, kits containing them and methods for using them form further aspects of the invention.
    Type: Grant
    Filed: March 9, 2020
    Date of Patent: May 16, 2023
    Assignee: FLUOROGENICS LTD.
    Inventors: Martin Lee, Diane Lee, Mark Laverick
  • Patent number: 11634456
    Abstract: A process for the extraction of collagen from collagen-containing matter, wherein the process comprises; incubating the collagen-containing matter in an acidic solution to form an incubant, then diafiltrating the incubant to substantially purify solubilised collagen within the incubant, thereby forming a retentate, then separating the soluble and insoluble matter of the retentate to remove the remaining insoluble matter, wherein the soluble matter is a substantially pure collagen solution.
    Type: Grant
    Filed: June 1, 2018
    Date of Patent: April 25, 2023
    Assignee: JELLAGEN PTY LTD
    Inventor: Andrew Mearns Spragg
  • Patent number: 11634735
    Abstract: The present invention provides for novel metabolic pathways leading to propanol, alcohol or polyol formation in a consolidated bioprocessing system (CBP), where lignocellulosic biomass is efficiently converted to such products. More specifically, the invention provides for a recombinant microorganism, where the microorganism expresses one or more native and/or heterologous enzymes; where the one or more enzymes function in one or more engineered metabolic pathways to achieve: (1) conversion of a carbohydrate source to 1,2-propanediol, isopropropanol, ethanol and/or glycerol; (2) conversion of a carbohydrate source to n-propanol and isopropanol; (3) conversion of a carbohydrate source to isopropanol and methanol; or (4) conversion of a carbohydrate source to propanediol and acetone; wherein the one or more native and/or heterologous enzymes is activated, upregulated or downregulated.
    Type: Grant
    Filed: July 1, 2020
    Date of Patent: April 25, 2023
    Assignee: Lallemand Hungary Liquidity Management LLC
    Inventors: John E. McBride, Vineet Rajgarhia, Arthur J. Shaw, IV, Shital A. Tripathi, Elena Brevnova, Nicky Caiazza, Johannes Pieter Van Dijken, Allan C. Froehlich, William Ryan Sillers, James H. Flatt
  • Patent number: 11634720
    Abstract: The technical field of preparation of organic compounds, and particularly to yeasts producing tyrosol or hydroxytyrosol and construction methods thereof. PcAAS and ADH-encoding DNA sequences are introduced into the yeast strain BY4741, to obtain a PcAAS-ADH recombinant yeast producing tyrosol. A PDC1 knockout cassette and a TyrA expression cassette are introduced into the PcAAS-ADH recombinant yeast to obtain a PcAAS-ADH-?PDC1-TyrA recombinant yeast producing tyrosol. A HpaBC encoding DNA sequence is introduced into the PcAAS-ADH-?PDC1-TyrA recombinant yeast, to obtain a PcAAS-ADH-HpaBC-?PDC1-TyrA recombinant yeast producing hydroxytyrosol. The construction of a tyrosol or hydroxytyrosol biosynthesis pathway in the yeast strain BY4741 enhances the production of tyrosol or hydroxytyrosol.
    Type: Grant
    Filed: April 16, 2019
    Date of Patent: April 25, 2023
    Assignee: SHANDONG HENGLU BIOTECH. CO., LTD.
    Inventors: Xu Fang, Wei Guo, Lijuan Han
  • Patent number: 11629372
    Abstract: Compositions comprise statistically random heteropolymers complexed with active proteins, and are formulated and used in stimuli-responsive materials and nanoreactors composed of proteins and synthetic materials.
    Type: Grant
    Filed: June 21, 2020
    Date of Patent: April 18, 2023
    Assignee: The Regents of the University of California
    Inventors: Ting Xu, Brian Panganiban, Tao Jiang
  • Patent number: 11613745
    Abstract: The present invention relates to a recombinant OxDC expressed in a filamentous fungal host cell, methods for constructing a recombinant filamentous fungal host cell, methods for producing recombinant OxDC and the application thereof. The recombinant filamentous fungal host cell comprises one or more copies of OxDC expression cassette integrated in its genome; the expression cassette comprises a promoter, a signal peptide coding sequence, an OxDC coding sequence and a transcription terminator. The host cell can be constructed by random integration or site-specific integration. In addition, the present invention also optimizes the medium formulation for different recombinant filamentous fungal host cells. In the production of the recombinant OxDC, the final yield and enzyme activity were greatly improved. The invention effectively solves the problem that the production of OxDC in the prior art cannot be industrialized on a large scale.
    Type: Grant
    Filed: September 21, 2018
    Date of Patent: March 28, 2023
    Assignee: WUHAN KANGFUDE BIOTECHNOLOGY CO., LTD.
    Inventors: Wei Wang, Xiaofeng Wang, Yanhong Liu, He Huang, Huoqing Chen, Xianqiao Chen
  • Patent number: 11603549
    Abstract: Described herein are devices and methods for using the same to produce carotenoids. The carotenoids produced by the devices and methods disclosed herein do not require the ultra purification that is common in conventional or commercial methods. The devices and methods disclosed herein also enhance one or more physical properties of plants treated with the devices described herein.
    Type: Grant
    Filed: September 10, 2018
    Date of Patent: March 14, 2023
    Assignee: Bio Capital Holdings, LLC
    Inventor: Raul Cuero Rengifo
  • Patent number: 11597954
    Abstract: This invention relates to the bioproduction of substituted or unsubstituted phenylacetaldehyde, 2-phenylethanol, phenylacetic acid or phenylethylamine by subjecting a starting material comprising glucose, L-phenylalanine, substituted L-phenylalanine, styrene or substituted styrene to a plurality of enzyme catalyzed chemical transformations in a one-pot reaction system, using recombinant microbial cells overexpressing the enzymes. To produce phenylacetaldehyde from styrene, the cells are modified to overexpress styrene monooxygenase (SMO) and styrene oxide isomerase (SOI). To produce phenylacetic acid from styrene, SMO, SOI and aldehyde dehydrogenase are overexpressed. Alternatively, to produce 2-phenylethanol, SMO, SOI and aldehyde reductase or alcohol dehydrogenase are overexpressed, while to produce phenylethylamine, SMO, SOI and transaminase are overexpressed.
    Type: Grant
    Filed: May 23, 2018
    Date of Patent: March 7, 2023
    Assignee: NATIONAL UNIVERSITY OF SINGAPORE
    Inventors: Zhi Li, Shuke Wu, Yi Zhou, Benedict Ryan Lukito