Patents by Inventor Sakari Kauppinen

Sakari Kauppinen has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8288356
    Abstract: The present invention relates to very short heavily modified oligonucleotides which target and inhibit microRNAs in vivo, and their use in medicaments and pharmaceutical compositions.
    Type: Grant
    Filed: October 3, 2008
    Date of Patent: October 16, 2012
    Assignee: Santaris Pharma A/S
    Inventors: Susanna Obad, Sakari Kauppinen, Joacim Elmen, Morten Lindow, Markus Heidenblad
  • Publication number: 20120238618
    Abstract: The invention provides pharmaceutical compositions comprising short single stranded oligonucleotides, of length of between 8 and 26 nucleobases which are complementary to human microRNAs selected from the group consisting of miR19b, miR21, miR122a, miR155 and miR375. The short oligonucleotides are particularly effective at alleviating miRNA repression in vivo. It is found that the incorporation of high affinity nucleotide analogues into the oligonucleotides results in highly effective anti-microRNA molecules which appear to function via the formation of almost irreversible duplexes with the miRNA target, rather than RNA cleavage based mechanisms, such as mechanisms associated with RNaseH or RISC.
    Type: Application
    Filed: March 8, 2012
    Publication date: September 20, 2012
    Applicant: Santaris Pharma A/S
    Inventors: Joacim Elmén, Phil Kearney, Sakari Kauppinen
  • Patent number: 8207325
    Abstract: The present invention relates to novel molecular markers for diagnosis and classification of human breast cancer and lung cancer.
    Type: Grant
    Filed: May 6, 2009
    Date of Patent: June 26, 2012
    Assignees: Univ. of Copenhagen, Trustees of Dartmouth College
    Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, Mette Christensen
  • Publication number: 20120157333
    Abstract: The invention features improved nucleic acids and methods for expression profiling of mRNAs, identifying and profiling of particular mRNA splice variants, and detecting mutations, deletions, or duplications of particular exons or other splice variants, e.g., alterations associated with a disease such as cancer, in a nucleic acid sample, e.g., a biological sample or a patient sample.
    Type: Application
    Filed: November 14, 2011
    Publication date: June 21, 2012
    Applicant: Exiqon A/S
    Inventors: Sakari Kauppinen, Carsten Alsbo, Peter S. Nielsen, Daniel C. Jeffares, Tobias Mourier, Søren Mørk, Peter Arctander, Niels Tommerup, Niels Tolstrup, Henrik Vissing, Søren Morgenthaler Echwald
  • Patent number: 8192937
    Abstract: The invention relates to ribonucleic acids, probes and methods for detection, quantification as well as monitoring the expression of mature microRNAs and small interfering RNAs (siRNAs). The invention furthermore relates to methods for monitoring the expression of other non-coding RNAs, mRNA splice variants, as well as detecting and quantifying RNA editing, allelic variants of single transcripts, mutations, deletions, or duplications of particular exons in transcripts, e.g., alterations associated with human disease such as cancer. The invention furthermore relates to methods for detection, quantification as well as monitoring the expression of deoxy nucleic acids.
    Type: Grant
    Filed: April 7, 2005
    Date of Patent: June 5, 2012
    Assignee: Exiqon A/S
    Inventors: Nana Jacobsen, Lars Kongsbak, Sakari Kauppinen, Søren Morgenthaler Echwald, Peter Mouritzen, Peter Stein Nielsen, Mikkel Nørholm
  • Publication number: 20120115924
    Abstract: The present invention relates to the modulation of immunoregulatory proteins, including cytokines, such as colony stimulatory factors (CSF) via the use of microRNA-155 modulators.
    Type: Application
    Filed: July 24, 2009
    Publication date: May 10, 2012
    Applicant: Santaris Pharma A/S
    Inventors: Jesper Worm, Jan Stenvang, Susanna Obad, Sakari Kauppinen
  • Patent number: 8163708
    Abstract: The invention provides pharmaceutical compositions comprising short single stranded oligonucleotides, of length of between 8 and 26 nucleobases which are complementary to human microRNAs selected from the group consisting of miR19b, miR21, miR122a, miR155 and miR375. The short oligonucleotides are particularly effective at alleviating miRNA repression in vivo. It is found that the incorporation of high affinity nucleotide analogues into the oligonucleotides results in highly effective anti-microRNA molecules which appear to function via the formation of almost irreversible duplexes with the miRNA target, rather than RNA cleavage based mechanisms, such as mechanisms associated with RNaseH or RISC.
    Type: Grant
    Filed: March 30, 2007
    Date of Patent: April 24, 2012
    Assignee: Santaris Pharma A/S
    Inventors: Joacim Elmén, Phil Kearney, Sakari Kauppinen
  • Publication number: 20120083596
    Abstract: The invention provides pharmaceutical compositions comprising short single stranded oligonucleotides, of length of between 8 and 17 nucleobases which are complementary to human microRNAs. The short oligonucleotides are particularly effective at alleviating miRNA repression in vivo. It is found that the incorporation of high affinity nucleotide analogues into the oligonucleotides results in highly effective anti-microRNA molecules which appear to function via the formation of almost irreversible duplexes with the miRNA target, rather than RNA cleavage based mechanisms, such as mechanisms associated with RNaseH or RISC.
    Type: Application
    Filed: January 13, 2011
    Publication date: April 5, 2012
    Applicant: Santaris Pharma A/S
    Inventors: Joacim Elmén, Phil Kearney, Sakari Kauppinen
  • Patent number: 7955848
    Abstract: The present invention relates to novel molecular markers for diagnosis and classification of human breast cancer and lung cancer.
    Type: Grant
    Filed: April 2, 2007
    Date of Patent: June 7, 2011
    Assignee: Trustees of Dartmouth College
    Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, Mette Christensen
  • Publication number: 20110077288
    Abstract: The present invention provides compositions and methods of treatment of diseases that are sensitive to drugs that downregulate the function of microRNA's, mRNA, non-coding RNA, or viral genomes. In particular, it has been discovered that a very long term effect of an anti microRNA oligonucleotide may be obtained when administered to a primate. Therefore, the present invention relate to pharmaceutical compositions and methods for treatment of primates, including humans wherein the compositions are administered with a long time interval.
    Type: Application
    Filed: March 9, 2009
    Publication date: March 31, 2011
    Applicant: Santaris Pharma A/S
    Inventors: Sakari Kauppinen, Niels Abrahamsen, Elisabeth Hildebrandt-Eriksen, Martin Munk
  • Publication number: 20110076675
    Abstract: The invention relates to ribonucleic acids, probes and methods for detection, quantification as well as monitoring the expression of mature microRNAs and small interfering RNAs (siRNAs). The invention furthermore relates to methods for monitoring the expression of other non-coding RNAs, mRNA splice variants, as well as detecting and quantifying RNA editing, allelic variants of single transcripts, mutations, deletions, or duplications of particular exons in transcripts, e.g., alterations associated with human disease such as cancer. The invention furthermore relates to methods for detection, quantification as well as monitoring the expression of deoxy nucleic acids.
    Type: Application
    Filed: June 1, 2009
    Publication date: March 31, 2011
    Applicant: EXIQON A/S
    Inventors: Nana Jacobsen, Lars Kongsbak, Sakari Kauppinen, Søren Morgenthaler Echwald, Peter Mouritzen, Peter Stein Nielsen, Mikkel Nørholm
  • Publication number: 20100330035
    Abstract: The present invention provides compositions and methods of treatment of HCV infected subjects that are not sensitive to interferon treatment. Further, compositions and methods are provided for prevention of organ transplant rejection. The compositions of the invention comprise an anti microRNA-122 oligonucleotide, and are made for administration to a primate.
    Type: Application
    Filed: April 26, 2010
    Publication date: December 30, 2010
    Inventors: Elisabeth S. HILDEBRANDT-ERIKSEN, Andreas Petri, Sakari Kauppinen, Niels Abrahamsen, Robert Eldon Lanford
  • Publication number: 20100298410
    Abstract: The present invention relates to very short heavily modified oligonucleotides which target and inhibit microRNAs in vivo, and their use in medicaments and pharmaceutical compositions.
    Type: Application
    Filed: October 3, 2008
    Publication date: November 25, 2010
    Inventors: Susana Obad, Sakari Kauppinen, Joacim Elmén, Morten Lindow, Markus Heidenblad
  • Publication number: 20100286234
    Abstract: The invention provides pharmaceutical compositions comprising short single stranded oligonucleotides, of length of between 8 and 26 nucleobases which are complementary to human microRNAs selected from the group consisting of miR19b, miR21, miR122a, miR155 and miR375. The short oligonucleotides are particularly effective at alleviating miRNA repression in vivo. It is found that the incorporation of high affinity nucleotide analogues into the oligonucleotides results in highly effective anti-microRNA molecules which appear to function via the formation of almost irreversible duplexes with the miRNA target, rather than RNA cleavage based mechanisms, such as mechanisms associated with RNaseH or RISC.
    Type: Application
    Filed: March 30, 2007
    Publication date: November 11, 2010
    Inventors: Joacim Elmen, Phil Kearney, Sakari Kauppinen
  • Publication number: 20100107342
    Abstract: The present invention relates to enzyme preparations consisting essentially of an enzyme which has cellulytic activity and comprises a first amino acid sequence having the following sequence (SEQ ID NO: 79) Thr Arg Xaa Xaa Asp Cys Cys Xaa Xaa Xaa Cys Xaa 1???2???3???4???5???6???7???8???9???10??11??12 Trp Xaa 13??14 and a second amino acid sequence having the following sequence Trp Cys Cys Xaa Cys (SEQ ID NO: 80) 1???2???3???4???5 wherein, at position 3 of the first sequence, the amino acid is Trp, Tyr or Phe; at position 4 of the first sequence, the amino acid is Trp, Tyr or Phe; at position 8 of the first sequence, the amino acid is Arg, Lys or His; at positions 9, 10, 12 and 14, respectively, of the first sequence, and at position 4 of the second sequence, the amino acid is any of the 20 naturally occurring amino acid residues with the provisos that, in the first amino acid sequence, (i) when the amino residue at position 12 is Ser, then the amino acid resid
    Type: Application
    Filed: September 25, 2009
    Publication date: May 6, 2010
    Applicant: NOVOZYMES A/S
    Inventors: MARTIN SCHULEIN, TORBEN HENRIKSEN, LENE NONBOE ANDERSEN, SOREN FLENSTED LASSEN, MARKUS SAKARI KAUPPINEN, LENE LANGE, RUBY IIUM NIELSEN, SHINOBU TAKAGI, MICHIKO IHARA
  • Publication number: 20100010072
    Abstract: The present invention relates to novel molecular markers for diagnosis and classification of human breast cancer and lung cancer.
    Type: Application
    Filed: May 6, 2009
    Publication date: January 14, 2010
    Applicants: Koebenhavns Universitet (University of Copenhagen), Trustees of Dartmouth College
    Inventors: Ethan DMITROVSKY, Xi Liu, Sarah Freemantle, Lorenzo Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, Mette Christensen
  • Publication number: 20100004320
    Abstract: The invention provides pharmaceutical compositions comprising short single stranded oligonucleotides, of length of between 8 and 17 nucleobases which are complementary to human microRNAs. The short oligonucleotides are particularly effective at alleviating miRNA repression in vivo. It is found that the incorporation of high affinity nucleotide analogues into the oligonucleotides results in highly effective anti-microRNA molecules which appear to function via the formation of almost irreversible duplexes with the miRNA target, rather than RNA cleavage based mechanisms, such as mechanisms associated with RNaseH or RISC.
    Type: Application
    Filed: March 30, 2007
    Publication date: January 7, 2010
    Applicant: Santaris Pharma A/S
    Inventors: Joacim Elmen, Phil Kearney, Sakari Kauppinen
  • Publication number: 20090298916
    Abstract: The present invention provides compositions and methods of treatment of diseases that are sensitive to drugs that downregulate the function of microRNA's, mRNA, non-coding RNA, or viral genomes. In particular, it has been discovered that a very long term effect of an anti microRNA oligonucleotide may be obtained when administered to a primate. Therefore, the present invention relate to pharmaceutical compositions and methods for treatment of primates, including humans wherein the compositions are administered with a long time interval.
    Type: Application
    Filed: March 9, 2009
    Publication date: December 3, 2009
    Applicant: Santaris Pharma A/S
    Inventors: Sakari Kauppinen, Niels Abrahamsen, Elisabeth Hildebrandt-Eriksen, Martin Munk
  • Publication number: 20090286753
    Abstract: The invention relates to ribonucleic acids and oligonucleotide probes useful for detection and analysis of microRNAs and their target mRNAs, as well as small interfering RNAs (siRNAs).
    Type: Application
    Filed: April 4, 2008
    Publication date: November 19, 2009
    Applicant: Exiqon A/S
    Inventors: Sakari Kauppinen, Ronald Plasterk, Erno Wienholds, Wigard Kloosterman
  • Publication number: 20090143326
    Abstract: The present invention relates to very short heavily modified oligonucleotides which target and inhibit microRNAs in vivo, and their use in medicaments and pharmaceutical compositions.
    Type: Application
    Filed: October 3, 2008
    Publication date: June 4, 2009
    Applicant: Santaris Pharma A/S
    Inventors: Susanna Obad, Sakari Kauppinen, Joacim Elmen, Morten Lindow, Markus Heidenblad