Patents by Inventor Stephen Turner

Stephen Turner has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11705217
    Abstract: Methods and systems for single molecule sequencing using concatemers of copies of sense and antisense strands. Concatemers are provided, for example, by carrying out rolling circle amplification on a circular molecule having sense and antisense regions to produce repeated copies of the sense and antisense regions connected by linking regions. The circular molecules can be produced by ligating hairpin adapters to each end of a double-stranded nucleic acid having a sense and antisense strand. The ligations can be carried out, for example using blunt end ligation. In some cases, a single molecule consensus sequence for a single template molecule is obtained. A single read from each template molecule can be obtained by comparing the sequence information of the sense and antisense regions.
    Type: Grant
    Filed: January 19, 2018
    Date of Patent: July 18, 2023
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Kevin Travers, Geoff Otto, Stephen Turner, Cheryl Heiner, Congcong Ma
  • Patent number: 11689939
    Abstract: Disclosed is a virtual wireless base station that can dynamically scale its capacity to meet changes in demand for connectivity. The virtual wireless base station includes a plurality of virtual baseband modules, a plurality of interface/router modules, an orchestrator module and a fabric mapper module. Each of the plurality of virtual baseband modules is coupled to the interface/router modules by a low latency switch fabric. The orchestrator determines current and near future demand for connectivity within the virtual wireless base station and either instantiates and connects new virtual baseband processors to meet a rise in demand, or shuts down underutilized virtual baseband processors in case of insufficient demand.
    Type: Grant
    Filed: October 30, 2019
    Date of Patent: June 27, 2023
    Assignee: John Mezzalingua Associates, LLC
    Inventors: Massimo Notargiacomo, Jeffrey Courington, Stephen Turner, Jeffrey Masters, Vishal Agrawal, Francesco Foresta
  • Publication number: 20230175060
    Abstract: Optics collection and detection systems are provided for measuring optical signals from an array of optical sources over time. Methods of using the optics collection and detection systems are also described.
    Type: Application
    Filed: September 7, 2022
    Publication date: June 8, 2023
    Inventors: Adrian FEHR, Nathaniel Joseph MCCAFFREY, Stephen TURNER
  • Publication number: 20230148447
    Abstract: Methods, compositions, and systems are provided for characterization of modified nucleic acids. In certain preferred embodiments, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. Modifications detectable by the methods provided herein include chemically modified bases, enzymatically modified bases, abasic sites, non-natural bases, secondary structures, and agents bound to a template nucleic acid.
    Type: Application
    Filed: August 26, 2020
    Publication date: May 11, 2023
    Inventors: Benjamin Flusberg, Stephen Turner, Jon Sorenson, Kevin Travers, Cheryl Heiner
  • Publication number: 20230144475
    Abstract: Optical analytical devices and their methods of use are provided. The devices are useful in the analysis of highly multiplexed optical reactions in large numbers at high densities, including biochemical reactions, such as nucleic acid sequencing reactions. The devices include integrated illumination elements and optical waveguides for illumination of the optical reactions. The devices further provide for the efficient coupling of optical excitation energy from the waveguides to the optical reactions. Optical signals emitted from the reactions can thus be measured with high sensitivity and discrimination using features such as spectra, amplitude, and time resolution, or combinations thereof. The devices of the invention are well suited for miniaturization and high throughput.
    Type: Application
    Filed: July 11, 2022
    Publication date: May 11, 2023
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Paul LUNDQUIST, Stephen TURNER
  • Patent number: 11640022
    Abstract: Optical analytical devices and their methods of use are provided. The devices are useful in the analysis of highly multiplexed optical reactions in large numbers at high densities, including biochemical reactions, such as nucleic acid sequencing reactions. The devices include optical waveguides for illumination of the optical reactions. The devices further provide for the efficient coupling of optical excitation energy from the waveguides to the optical reactions. Optical signals emitted from the reactions can thus be measured with high sensitivity and discrimination using features such as spectra, amplitude, and time resolution, or combinations thereof. The devices of the invention are well suited for miniaturization and high throughput.
    Type: Grant
    Filed: October 4, 2021
    Date of Patent: May 2, 2023
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Annette Grot, Shang Wang, Hans Callebaut, Paul Lundquist, Stephen Turner
  • Patent number: 11621802
    Abstract: Disclosed is a method for processing code blocks as implemented by a baseband processor. The method involves performing a cyclic redundancy check on decoded and deinterleaved code blocks until one fails its CRC check. On first failure the baseband processor requests a retransmission of the code blocks and resumes CRC checks on the retransmitted code blocks, beginning at the code block that had failed. In the event of subsequent failures, the baseband processor performs a soft combine on the failed retransmitted block with its original transmitted counterpart. Only if the soft combined code block fails does the baseband processor request another retransmission. In this case, subsequent CRC failures result in soft combines of three corresponding code words, making the process more robust. The method reduces the number of retransmissions as well as the computing resources needed for processing incoming code blocks.
    Type: Grant
    Filed: June 13, 2019
    Date of Patent: April 4, 2023
    Assignee: John Mezzalingua Associates, LLC
    Inventors: Rodney Bryant, Stephen Turner, Jeffrey Masters
  • Publication number: 20230079577
    Abstract: A control system for a perfusion system (1), the control system being configured to control a plurality of blood flow rates in the perfusion system during a weaning phase. The perfusion system comprises: a first blood line (26) in which blood is permitted to flow at a first flow rate; a second blood line (34) in which blood is permitted to flow at a second flow rate; an arterial blood line (22) in which blood is permitted to flow at an arterial flow rate; and an arterial pump (20) configured to circulate blood at the arterial flow rate in the arterial blood line. The control system comprises a controller configured to determine the first flow rate and the second flow rate and to process the first and second flow rates to determine a desired arterial flow rate. The controller is configured to operate in a first mode in which the controller modulates operation of the arterial pump (20) to adjust the arterial flow rate so that the arterial flow rate matches the desired arterial flow rate.
    Type: Application
    Filed: November 27, 2020
    Publication date: March 16, 2023
    Inventor: Stephen Turner
  • Patent number: 11584959
    Abstract: Methods are provided for reducing the complexity of a population of nucleic acids prior to performing an analysis of the nucleic acids, e.g., sequence analysis. The methods result in a subset of the initial population enriched for a target region, which is typically located within one or more target fragments. The methods are particularly useful for analyzing populations having a high degree of complexity, e.g., chromosomal-derived DNA, whole genomic DNA, or mRNA populations.
    Type: Grant
    Filed: March 24, 2020
    Date of Patent: February 21, 2023
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Thang Tat Pham, Yu-Chih Tsai, Jonas Korlach, Tyson A. Clark, Stephen Turner
  • Patent number: 11553322
    Abstract: Disclosed is a mobile edge computing system that provides localized emergency responses and warning exclusively to UEs within a venue or area, and provides location-specific warning within the venue or area. The system includes a component that aggregates the S1-mme interface between the MME and a plurality of baseband units and provides read and write access to the S1-mme interface. The disclosed mobile edge computing system can issue cell-specific public warning system (PWS) messages that are customized for and transmitted exclusively to each individual cell within the venue.
    Type: Grant
    Filed: February 4, 2021
    Date of Patent: January 10, 2023
    Assignee: John Mezzalingua Associates, LLC
    Inventors: Patrick Henkle, Vishal Agrawal, Jeffrey Courington, Todd Landry, Sasi Eswaravaka, John Blasko, Stephen Turner
  • Patent number: 11541158
    Abstract: An exhaust gas flow control system for an oxygenator of an extracorporeal ventilation system connected to an oxygenation gas supply line and to an exhaust line for removal of exhaust gas comprises a flow control path, a pressure control path, an exhaust flow regulator responsive to the controller, and an exhaust gas pressure regulator responsive to a controller configured to maintain a pre-determined pressure level in the exhaust line. This provides a better degree of control over the pressure across the oxygenator from oxygenation gas inlet to exhaust.
    Type: Grant
    Filed: May 31, 2018
    Date of Patent: January 3, 2023
    Assignee: Spectrum Medical Ltd.
    Inventors: Stephen Turner, Benjamin David Garbutt
  • Patent number: 11530445
    Abstract: The present invention provides methods, compositions, and systems for distributing molecules and complexes into reaction sites. In particular, the methods, compositions, and systems of the present invention result in an active loading of molecules and complexes into reaction sites with improved efficiency over loading by passive diffusion methods alone.
    Type: Grant
    Filed: June 9, 2020
    Date of Patent: December 20, 2022
    Assignee: Pacific Biosciences of California, Inc.
    Inventor: Stephen Turner
  • Publication number: 20220375609
    Abstract: Disclosed herein are classifier models, computer implemented systems, machine learning systems and methods thereof for classifying clinical variants of unknown or uncertain significance into a pathogenicity category using measured phenotype features extracted from phenotype assays of transgenic organism expressing the human clinical variant. Embodiments of the present invention relate generally to methods for generating classifier models using machine learning and use of those classifier models to predict the pathogenicity of a clinical variant for a specific human disease (e.g. genetic disease), assigning a patient clinical variant to a pathogenicity category (e.g. pathogenic or benign) for the specific human disease to determine whether that patient should be followed up with additional, more invasive diagnostic testing, or treatment.
    Type: Application
    Filed: October 15, 2020
    Publication date: November 24, 2022
    Applicant: NemaMetrix, Inc.
    Inventors: Lan Guo, Stephen Turner, Trisha Brock, Chris HOPKINS
  • Patent number: 11509537
    Abstract: Disclosed are various examples for Internet of Things (IoT) device discovery and deployment. In some embodiments, a device identifier is received from an IoT device. The IoT device is determined, based on the device identifier, to be associated with a device account with a management service. An enrollment of the IoT device is performed. A capabilities declaration is received from the IoT device. IoT device instructions are determined based on the capabilities declaration. IoT device instructions are transmitted to the IoT device, causing it to perform a capability specified in the capabilities declaration.
    Type: Grant
    Filed: January 4, 2021
    Date of Patent: November 22, 2022
    Assignee: VMware, Inc.
    Inventors: Stephen Turner, Daniel E. Zeck, Simon Brooks
  • Publication number: 20220366057
    Abstract: Various examples relate to detecting vulnerabilities in managed client devices. In some examples, a system determines whether a vulnerability scan of a computing device is required to be performed. The system installs a vulnerability detection component in the computing device in response to determining that the vulnerability scan is required to be performed. The system requests the vulnerability detection component to perform the vulnerability scan of the computing device. The system transmits a result of the vulnerability scan to a remote management service for the computing device.
    Type: Application
    Filed: August 1, 2022
    Publication date: November 17, 2022
    Inventors: Scott Harlow Kelley, Adarsh Subhash Chandra Jain, Stephen Turner
  • Publication number: 20220323741
    Abstract: A clamping mechanism (30) for clamping a flexible tube comprises two rotatable bobbins (22, 32), each with a tube-engaging surface portion (24) defining boundaries of: a free space through which a tube may extend. The shape of: the tube-engaging surface portion (24) changes around the bobbin circumference, such that axial rotation of the bobbins (22, 32) reduces the free space and thereby squeezes the tube. This allows the flow through the tube to be altered dependent on the rotation of: the bobbins.
    Type: Application
    Filed: June 8, 2022
    Publication date: October 13, 2022
    Inventor: Stephen Turner
  • Patent number: 11445389
    Abstract: Disclosed is a virtual base station capable of hosting multiple network operators and/or private networks in a single compute environment. The virtual base station includes a plurality of virtual baseband processors configured to communicate with the plurality of mobile network operators, a supervisor module, a fronthaul network interface configured to be coupled to one or more remote units, and a KPI (Key Performance Indicator) coordinator module coupled to the supervisor module and the one or more virtual baseband processors. The base station may have on or more CBRS (Citizens Broadband Radio Service) Daemons to act as a proxy for obtaining grants to CBRS channels and allocating the CBRS channels to the mobile network operators.
    Type: Grant
    Filed: July 22, 2020
    Date of Patent: September 13, 2022
    Assignee: John Mezzalingua Associates, LLC
    Inventors: Massimo Notargiacomo, Todd Landry, Jeffrey Masters, Roberto Orlandini, Jeffrey Courlington, Francesco Foresta, Stephen Turner, Alessandro Pagani, Domenico Di Iorio, Kurt Jacobs, Patrick Henkle, Vishal Agrawal, Sasi Eswaravaka, Paul Stath
  • Patent number: 11443023
    Abstract: Disclosed are various examples for distributed profile and key management. In one example, a client device can include an agent application and a PIV-D application. The agent application can receive a partially populated device profile generated by a management service to configure a setting on the client device. The PIV-D application can generate a derived credential and provide the derived credential to the agent application. The agent application can modify the partially populated device profile to include the credential to create a fully populated device profile and configure the client device in accordance with the fully populated device profile.
    Type: Grant
    Filed: August 24, 2017
    Date of Patent: September 13, 2022
    Assignee: VMware, Inc.
    Inventors: Eugene Liderman, Jonathon Deriso, William Thomas Hooper, Sagar Date, Tejas Mehrotra, Stephen Turner, Amogh Datar, Dipanshu Gupta
  • Publication number: 20220265911
    Abstract: A method of controlling thermal transfer in a perfusion system heat exchanger of an extracorporeal fluid treatment device for conditioning an extracorporeal patient fluid for administration to a patient comprises a step of providing a perfusion system heat exchanger, wherein the perfusion system heat exchanger comprises a first fluid passage for a liquid heat transfer medium and a second fluid passage for the extracorporeal patient fluid to be temperature-controlled via exchange of thermal energy with the heat transfer medium, and a step of providing the heat transfer medium through the first fluid passage. The heat transfer medium comprises a component with anti-microbial properties, such as glycol. The provision of antimicrobial fluid reduces the risk of microbe contamination of the extracorporeal fluid, and hence the risk of clinical complications.
    Type: Application
    Filed: May 13, 2022
    Publication date: August 25, 2022
    Inventors: Stephen Turner, Benjamin David Garbutt
  • Patent number: 11423156
    Abstract: The disclosure relates to detecting vulnerabilities in managed client devices. A system determines whether a vulnerability scan of a computing device is required to be performed. The system installs a vulnerability detection component in the computing device in response to determining that the vulnerability scan is required to be performed. The system requests the vulnerability detection component to perform the vulnerability scan of the computing device. The system transmits a result of the vulnerability scan to a remote management service for the computing device.
    Type: Grant
    Filed: October 14, 2019
    Date of Patent: August 23, 2022
    Assignee: AirWatch LLC
    Inventors: Scott Harlow Kelley, Adarsh Subhash Chandra Jain, Stephen Turner