Patents by Inventor Yoshihide Hayashizaki

Yoshihide Hayashizaki has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230279358
    Abstract: The invention relates to methods and compositions for converting one cell type to another cell type. Specifically, the invention relates to transdifferentiation of a cell to a different cell type. The invention relates to a method for determining the transcription factors required for conversion of a source cell to a cell exhibiting at least one characteristic of a target cell type. The invention also relates to method of reprogramming or forward programming a source cell.
    Type: Application
    Filed: December 7, 2022
    Publication date: September 7, 2023
    Inventors: Jaber Firas, Jose Polo, Julian Gough, Yoshihide Hayashizaki, Owen Rackham
  • Publication number: 20210349022
    Abstract: An analysis device 1 is provided with: a flow channel 12c; a suction mechanism connected to one end of the flow channel, the suction mechanism being configured to introduce a trace amount of a liquid sample L from the other end of the flow channel 12c into an inside of the flow channel 12c and hold the liquid sample L in a part of the flow channel 12c; and a measurement unit 40 configured such that a light irradiation unit 41 for irradiating the liquid sample L held by the part of the flow channel member 12 with light and a light reception unit for receiving the light from the liquid sample L are disposed around the liquid sample L. The measurement unit 40 is provided with an aperture member 46 to limit the light directed from the light irradiation unit 41 toward the liquid sample L, the aperture member 46 including an opening having an opening width L2 shorter than a liquid length L1 of the liquid sample L held by the flow channel 12c in the flow channel 12c.
    Type: Application
    Filed: August 13, 2019
    Publication date: November 11, 2021
    Inventors: Yasuo TSUKUDA, Takahide HIRAMATSU, Toshiro KIMURA, Masayoshi ITO, Yoshihide HAYASHIZAKI, Yuji TANAKA, Yoshihiro YUU, Taku MATSUDERA, Atsushi SASAKI
  • Patent number: 10787711
    Abstract: Provided is an approach for differentially determining the histological type of a lung cancer lesion objectively and rapidly with high accuracy. A method for differentially assessing a lesion in a lung cancer patient as squamous cell carcinoma or adenocarcinoma, comprising a step of measuring an expression level of an expression product of at least one DNA comprising a transcription start site in a biological sample collected from the lesion, wherein the DNA comprises a base at an arbitrary position in the transcription start site and at least one or more bases located immediately downstream thereof in any of nucleotide sequences represented by SEQ ID NOs: 1 to 213, and the transcription start site is a region wherein both ends thereof are defined by the first base and the 101st base counted from the 3? end in any of the nucleotide sequences represented by SEQ ID NOs: 1 to 213.
    Type: Grant
    Filed: March 11, 2015
    Date of Patent: September 29, 2020
    Assignees: JUNTENDO EDUCATIONAL FOUNDATION, RIKEN
    Inventors: Kazuya Takamochi, Kenji Suzuki, Tsuyoshi Saito, Kieko Hara, Keiko Mitani, Kaoru Mogushi, Yoshihide Hayashizaki, Masayoshi Ito, Hideya Kawaji, Hiroko Oomiya, Yasunari Yamanaka
  • Patent number: 10760116
    Abstract: The present invention provides a method for analyzing a template nucleic acid, a method for analyzing a target substance, an analysis kit for a template nucleic acid or a target substance, and an analyzer for a template nucleic acid or a target substance, which are excellent in accuracy.
    Type: Grant
    Filed: August 26, 2016
    Date of Patent: September 1, 2020
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Yuji Tanaka, Yoshihide Hayashizaki, Koichiro Tsujimaru
  • Patent number: 10428371
    Abstract: The present invention is intended to provide a novel fluorescent labeled single-stranded nucleic acid, by which the background of an exciton oligomer can be further reduced and the novel use thereof. The present invention relates to a labeled single-stranded nucleic acid having at least two fluorescent atomic group pairs that exhibit an exciton effect. The labeled single-stranded nucleic acid is characterized in that the emission peak wavelength of one of the fluorescent atomic group pairs (fluorescent atomic group pair A) is shorter than the excitation peak wavelength of the other fluorescent atomic group pair (fluorescent atomic group pair B), and the fluorescent atomic group pairs A and B have a Förster resonance energy transfer (FRET) effect. This fluorescent labeled single-stranded nucleic acid is usable as a primer for amplifying a target nucleic acid or a probe to be hybridized with a target nucleic acid.
    Type: Grant
    Filed: March 27, 2015
    Date of Patent: October 1, 2019
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Takeshi Hanami, Yoshihide Hayashizaki, Takahiro Soma, Yasumasa Kimura
  • Publication number: 20190271027
    Abstract: A method for detecting a target nucleic acid molecule of the present invention includes a step of associating a first and third probes labeled with a first fluorescent substance which is an energy donor with a second probe labeled with a second fluorescent substance which is an energy acceptor to form an associate in a nucleic acid molecule; and a step of emitting light with an excitation wavelength of the first fluorescent substance to the associate to detect the target nucleic acid molecule using fluorescence released from the second fluorescent substance in the associate as an indicator, wherein a region associating with the second probe is between a region associating with the first probe and a region associating with the third probe in the target nucleic acid molecule.
    Type: Application
    Filed: April 12, 2019
    Publication date: September 5, 2019
    Applicants: OLYMPUS CORPORATION, RIKEN
    Inventors: Takuya Hanashi, Tetsuya Tanabe, Takeshi Hanami, Yoshihide Hayashizaki
  • Patent number: 10294261
    Abstract: The present invention provides a compound represented by the following chemical formula (I); a tautomer or stereoisomer of the compound; or a salt of the compound, the tautomer, or the stereoisomer. In the chemical formula (I), R1 and R2 are each a Group 1 element or a protecting group of an amino group and may be identical to or different from each other, or alternatively, R1 and R2 together may form a protecting group of an amino group. R3 is a Group 1 element or a protecting group of a hydroxy group. R4 is a Group 1 element or —PR5R6R7R8 (R5, R6, R7, and R8 are each a Group 1 element, a lone electron pair, a Group 16 element, a Group 17 element, or a protecting group of a phosphorus atom, and may be identical to or different from each other). J is a hydrogen atom or an arbitrary atomic group, A is a hydrogen atom, a hydroxy group, an alkyl group, an aralkyl group, an alkoxy group, an electron-withdrawing group, a silylene group, or a sulfide group, or alternatively, J and A together may form a linker.
    Type: Grant
    Filed: September 3, 2013
    Date of Patent: May 21, 2019
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Yoshihide Hayashizaki, Takahiro Soma, Takeshi Hanami, Hajime Kanamori, Masaru Baba
  • Publication number: 20190032108
    Abstract: The present invention provides a method for analyzing a template nucleic acid, a method for analyzing a target substance, an analysis kit for a template nucleic acid or a target substance, and an analyzer for a template nucleic acid or a target substance, which are excellent in accuracy.
    Type: Application
    Filed: August 26, 2016
    Publication date: January 31, 2019
    Applicants: RIKEN, KABUSHIKI KAISHA DNAFORM
    Inventors: Yuji TANAKA, Yoshihide HAYASHIZAKI, Koichiro TSUJIMARU
  • Publication number: 20190017032
    Abstract: The invention relates to methods and compositions for converting one cell type to another cell type. Specifically, the invention relates to transdifferentiation of a cell to a different cell type. The invention relates to a method for determining the transcription factors required for conversion of a source cell to a cell exhibiting at least one characteristic of a target cell type. The invention also relates to method of reprogramming or forward programming a source cell.
    Type: Application
    Filed: December 23, 2016
    Publication date: January 17, 2019
    Inventors: Jaber Firas, Jose Polo, Julian Gough, Yoshihide Hayashizaki, Owen Rackham
  • Patent number: 10066264
    Abstract: The present invention is to provide a method for analyzing a target nucleic acid, by which the target nucleic acid can be analyzed rapidly and easily. In order to achieve the above object, the present invention provides a method for analyzing a target nucleic acid in a sample, including the step of: analyzing the target nucleic acid in the sample by bringing the sample into contact with a label and with a primer or probe that can hybridize to the target nucleic acid. The primer or probe is immobilized on a solid phase. The label does not emit light when the primer or probe does not hybridize to the target nucleic acid, whereas the label emits light when the primer or probe has hybridized to the target nucleic acid. The analysis is carried out by detecting the light emitted from the label.
    Type: Grant
    Filed: August 29, 2013
    Date of Patent: September 4, 2018
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Yoshihide Hayashizaki, Masayoshi Itoh, Takahiro Arakawa, Kengo Usui, Sotaro Uemura, Yasumasa Mitani
  • Patent number: 9862989
    Abstract: The present invention provides a nucleic acid probe that can achieve high detection sensitivity and high specificity in mutation detection, mismatch detection, etc. by the PCR method, a method for designing such a nucleic acid probe, and a method for detecting a target sequence. The nucleic acid probe includes a nucleic acid molecule, and the nucleic acid molecule includes a plurality of fluorescent dye moieties that exhibit an excitonic effect. At least two of the fluorescent dye moieties that exhibit an excitonic effect are bound to the same base or two adjacent bases in the nucleic acid molecule with each fluorescent dye moiety being bound via a linker (a linking atom or a linking atomic group). The extension-side end of the nucleic acid molecule is chemically modified, thereby preventing an extension reaction of the nucleic acid molecule.
    Type: Grant
    Filed: July 12, 2013
    Date of Patent: January 9, 2018
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Yoshihide Hayashizaki, Takeshi Hanami, Takahiro Soma, Yasumasa Kimura, Hajime Kanamori, Yasumasa Mitani
  • Publication number: 20170145482
    Abstract: The present invention is intended to provide a novel fluorescent labeled single-stranded nucleic acid, by which the background of an exciton oligomer can be further reduced and the novel use thereof. The present invention relates to a labeled single-stranded nucleic acid having at least two fluorescent atomic group pairs that exhibit an exciton effect. The labeled single-stranded nucleic acid is characterized in that the emission peak wavelength of one of the fluorescent atomic group pairs (fluorescent atomic group pair A) is shorter than the excitation peak wavelength of the other fluorescent atomic group pair (fluorescent atomic group pair B), and the fluorescent atomic group pairs A and B have a Förster resonance energy transfer (FRET) effect. This fluorescent labeled single-stranded nucleic acid is usable as a primer for amplifying a target nucleic acid or a probe to be hybridized with a target nucleic acid.
    Type: Application
    Filed: March 27, 2015
    Publication date: May 25, 2017
    Inventors: Takeshi HANAMI, Yoshihide HAYASHIZAKI, Takahiro SOMA, Yasumasa KIMURA
  • Publication number: 20170073766
    Abstract: Provided is an approach for differentially determining the histological type of a lung cancer lesion objectively and rapidly with high accuracy. A method for differentially assessing a lesion in a lung cancer patient as squamous cell carcinoma or adenocarcinoma, comprising a step of measuring an expression level of an expression product of at least one DNA comprising a transcription start site in a biological sample collected from the lesion, wherein the DNA comprises a base at an arbitrary position in the transcription start site and at least one or more bases located immediately downstream thereof in any of nucleotide sequences represented by SEQ ID NOs: 1 to 213, and the transcription start site is a region wherein both ends thereof are defined by the first base and the 101st base counted from the 3? end in any of the nucleotide sequences represented by SEQ ID NOs: 1 to 213.
    Type: Application
    Filed: March 11, 2015
    Publication date: March 16, 2017
    Applicants: JUNTENDO EDUCATIONAL FOUNDATION, RIKEN
    Inventors: Kazuya TAKAMOCHI, Kenji SUZUKI, Tsuyoshi SAITO, Kieko HARA, Keiko MITANI, Kaoru MOGUSHI, Yoshihide HAYASHIZAKI, Masayoshi TO, Hideya KAWAJI, Hiroko OOMIYA, Yasunari YAMANAKA
  • Patent number: 9586987
    Abstract: The present invention provides a primer set including primers that can be designed easily, with which an amplification distance can be shortened. Provided is a primer set for use in a method for isothermally amplifying a target nucleic acid sequence 4. The primer set includes a first primer 1F and a second primer 1R. The first primer 1F includes, on the 3? side thereof, a sequence (A?) that can hybridize to a sequence (A) on the 3? side of the target nucleic acid sequence. The second primer 1R includes, on the 3? side thereof, a sequence (B?) that can hybridize to a sequence (B) on the 3? side of either a strand extended from the first primer or a complementary strand of the target nucleic acid sequence 4. The first primer 1F and the second primer 1R include, on the 5? sides thereof, sequences (C) that are substantially identical to each other.
    Type: Grant
    Filed: September 7, 2012
    Date of Patent: March 7, 2017
    Assignee: Kabushiki Kaisha DNAFORM
    Inventors: Yoshihide Hayashizaki, Yasumasa Kimura, Kengo Usui, Yuki Tanaka, Yuki Kawai
  • Patent number: 9518901
    Abstract: The present invention is to provide a pretreatment method that allows RNA to be detected promptly and simply. RNA degradation activity due to lactoferrin present in the human rhinal mucosa is inhibited, for example, by adding iron ion and carbonate ion to a biological sample that contains the human rhinal mucosa. With the pretreated biological sample, an RNA virus gene can be amplified by a reverse transcriptase. Iron ion and carbonate ion can also inhibit reverse transcriptase inhibition due to lysozyme C contained in the human rhinal mucosa. Further, it is preferable to remove the envelope of the RNA virus by adding SDS to the biological sample that contains the human rhinal mucosa.
    Type: Grant
    Filed: June 28, 2012
    Date of Patent: December 13, 2016
    Assignee: KABUSHIKI KAISHA DNAFORM
    Inventors: Yoshihide Hayashizaki, Kengo Usui, Saori Goda, Kazuhito Nomura, Yuki Kawai
  • Publication number: 20150252070
    Abstract: The present invention provides a compound represented by the following chemical formula (I); a tautomer or stereoisomer of the compound; or a salt of the compound, the tautomer, or the stereoisomer. In the chemical formula (I), R1 and R2 are each a Group 1 element or a protecting group of an amino group and may be identical to or different from each other, or alternatively, R1 and R2 together may form a protecting group of an amino group. R3 is a Group 1 element or a protecting group of a hydroxy group. R4 is a Group 1 element or —PR5R6R7R8 (R5, R6, R7, and R8 are each a Group 1 element, a lone electron pair, a Group 16 element, a Group 17 element, or a protecting group of a phosphorus atom, and may be identical to or different from each other). J is a hydrogen atom or an arbitrary atomic group, A is a hydrogen atom, a hydroxy group, an alkyl group, an aralkyl group, an alkoxy group, an electron-withdrawing group, a silylene group, or a sulfide group, or alternatively, J and A together may form a linker.
    Type: Application
    Filed: September 3, 2013
    Publication date: September 10, 2015
    Inventors: Yoshihide Hayashizaki, Takahiro Soma, Takeshi Hanami, Hajime Kanamori, Masaru Baba
  • Publication number: 20150203902
    Abstract: The present invention provides a nucleic acid probe that can achieve high detection sensitivity and high specificity in mutation detection, mismatch detection, etc. by the PCR method, a method for designing such a nucleic acid probe, and a method for detecting a target sequence. The nucleic acid probe includes a nucleic acid molecule, and the nucleic acid molecule includes a plurality of fluorescent dye moieties that exhibit an excitonic effect. At least two of the fluorescent dye moieties that exhibit an excitonic effect are bound to the same base or two adjacent bases in the nucleic acid molecule with each fluorescent dye moiety being bound via a linker (a linking atom or a linking atomic group). The extension-side end of the nucleic acid molecule is chemically modified, thereby preventing an extension reaction of the nucleic acid molecule.
    Type: Application
    Filed: July 12, 2013
    Publication date: July 23, 2015
    Inventors: Yoshihide Hayashizaki, Takeshi Hanami, Takahiro Soma, Yasumasa Kimura, Hajime Kanamori, Yasumasa Mitani
  • Publication number: 20150152496
    Abstract: The present invention is to provide a method for analyzing a target nucleic acid, by which the target nucleic acid can be analyzed rapidly and easily. In order to achieve the above object, the present invention provides a method for analyzing a target nucleic acid in a sample, including the step of: analyzing the target nucleic acid in the sample by bringing the sample into contact with a label and with a primer or probe that can hybridize to the target nucleic acid. The primer or probe is immobilized on a solid phase. The label does not emit light when the primer or probe does not hybridize to the target nucleic acid, whereas the label emits light when the primer or probe has hybridized to the target nucleic acid. The analysis is carried out by detecting the light emitted from the label.
    Type: Application
    Filed: August 29, 2013
    Publication date: June 4, 2015
    Inventors: Yoshihide Hayashizaki, Masayoshi Itoh, Takahiro Arakawa, Kengo Usui, Sotaro Uemura, Yasumasa Mitani
  • Patent number: 8956606
    Abstract: A malignant tumor cell suppressor protein (a) or (b): (a) a protein comprising an amino acid sequence represented by SEQ ID No. 1; or (b) a protein comprising an amino acid sequence represented by SEQ ID No. 1, wherein one or more amino acid are deleted, substituted or added in the amino acid sequence set forth in SEQ ID No. 1.
    Type: Grant
    Filed: June 30, 2006
    Date of Patent: February 17, 2015
    Inventors: Toshiwo Andoh, Tetsuo Sugahara, Yoshihide Hayashizaki, Yasushi Okazaki
  • Publication number: 20140295447
    Abstract: The present invention provides a primer set including primers that can be designed easily, with which an amplification distance can be shortened. Provided is a primer set for use in a method for isothermally amplifying a target nucleic acid sequence 4. The primer set includes a first primer 1F and a second primer 1R. The first primer 1F includes, on the 3? side thereof, a sequence (A?) that can hybridize to a sequence (A) on the 3? side of the target nucleic acid sequence. The second primer 1R includes, on the 3? side thereof, a sequence (B?) that can hybridize to a sequence (B) on the 3? side of either a strand extended from the first primer or a complementary strand of the target nucleic acid sequence 4. The first primer 1F and the second primer 1R include, on the 5? sides thereof, sequences (C) that are substantially identical to each other.
    Type: Application
    Filed: September 7, 2012
    Publication date: October 2, 2014
    Applicants: KABUSHIKI KAISHA DNAFORM, RIKEN
    Inventors: Yoshihide Hayashizaki, Yasumasa Kimura, Kengo Usui, Yuki Tanaka, Yuki Kawai